Wall clock time and date at job start Tue Mar 31 2020 22:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39651 * 120.18750 * 169.91187 * 3 2 1 5 5 C 1.37799 * 119.77567 * 179.97438 * 4 3 2 6 6 C 1.38668 * 120.42134 * 359.97394 * 5 4 3 7 7 C 1.38382 * 120.08849 * 0.02717 * 6 5 4 8 8 C 1.38223 * 120.00246 * 359.97438 * 7 6 5 9 9 C 1.51394 * 109.74103 * 180.02562 * 7 6 5 10 10 C 1.54337 * 105.17498 * 342.78047 * 9 7 6 11 11 H 1.08992 * 110.98438 * 268.10587 * 10 9 7 12 12 N 1.46497 * 110.81668 * 144.64570 * 10 9 7 13 13 C 1.34781 * 120.00081 * 160.56045 * 12 10 9 14 14 O 1.21587 * 119.99960 * 4.97696 * 13 12 10 15 15 N 1.34771 * 120.00049 * 184.97963 * 13 12 10 16 16 C 1.46928 * 120.63182 * 354.77045 * 15 13 12 17 17 C 1.53192 * 108.77750 * 233.58667 * 16 15 13 18 18 C 1.53046 * 109.31312 * 305.36514 * 17 16 15 19 19 C 1.53043 * 109.53527 * 61.36457 * 18 17 16 20 20 H 1.08998 * 109.49726 * 58.58400 * 19 18 17 21 21 C 1.50698 * 109.49433 * 178.68577 * 19 18 17 22 22 H 1.07991 * 120.00386 * 359.97438 * 21 19 18 23 23 C 1.37879 * 119.99868 * 180.02562 * 21 19 18 24 24 N 1.31515 * 119.99883 * 359.97438 * 23 21 19 25 25 Si 1.86798 * 120.00042 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47489 * 59.99631 * 25 23 21 27 27 H 1.48502 * 109.47135 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46832 * 299.99586 * 25 23 21 29 29 C 1.46924 * 120.63169 * 174.75090 * 15 13 12 30 30 C 1.51425 * 130.20897 * 180.02562 * 6 5 4 31 31 H 1.07995 * 120.11088 * 359.94963 * 4 3 2 32 32 H 1.07997 * 119.78391 * 179.97438 * 5 4 3 33 33 H 1.08006 * 119.95147 * 180.02562 * 8 7 6 34 34 H 1.09005 * 110.29942 * 223.85712 * 9 7 6 35 35 H 1.08998 * 110.30662 * 101.70587 * 9 7 6 36 36 H 0.97007 * 120.00032 * 340.54849 * 12 10 9 37 37 H 1.09007 * 109.58233 * 113.79963 * 16 15 13 38 38 H 1.08996 * 109.70524 * 353.44726 * 16 15 13 39 39 H 1.09000 * 109.49961 * 185.41366 * 17 16 15 40 40 H 1.08996 * 109.49651 * 65.31621 * 17 16 15 41 41 H 1.09003 * 109.45808 * 301.34856 * 18 17 16 42 42 H 1.08998 * 109.44904 * 181.37823 * 18 17 16 43 43 H 0.97002 * 119.99938 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.58472 * 6.62542 * 29 15 13 45 45 H 1.09006 * 109.58693 * 246.20194 * 29 15 13 46 46 H 1.08996 * 110.30489 * 78.27562 * 30 6 5 47 47 H 1.08998 * 110.37843 * 316.16723 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 1.1894 -0.2114 5 6 4.6476 1.1804 -0.2092 6 6 5.3417 -0.0014 0.0022 7 6 4.6524 -1.1827 0.2123 8 6 3.2701 -1.1858 0.2122 9 6 5.6332 -2.3178 0.4163 10 6 6.9793 -1.7905 -0.1241 11 1 7.1062 -2.0493 -1.1752 12 7 8.0966 -2.3010 0.6741 13 6 9.3452 -2.2962 0.1664 14 8 9.5591 -1.7863 -0.9164 15 7 10.3564 -2.8567 0.8590 16 6 10.1374 -3.3746 2.2164 17 6 11.1662 -2.7406 3.1579 18 6 12.5737 -2.9881 2.6102 19 6 12.7099 -2.3325 1.2340 20 1 12.5145 -1.2636 1.3193 21 6 14.1060 -2.5492 0.7098 22 1 14.8249 -3.0990 1.2990 23 6 14.4660 -2.0445 -0.5218 24 7 13.5907 -1.3744 -1.2392 25 14 16.1963 -2.3136 -1.1721 26 1 16.4598 -3.7702 -1.2904 27 1 16.3279 -1.6772 -2.5073 28 1 17.1767 -1.7077 -0.2356 29 6 11.6986 -2.9619 0.2707 30 6 6.8321 -0.2645 0.0504 31 1 2.7342 2.1126 -0.3766 32 1 5.1904 2.0995 -0.3731 33 1 2.7330 -2.1083 0.3767 34 1 5.3176 -3.1961 -0.1468 35 1 5.7191 -2.5577 1.4761 36 1 7.9379 -2.6423 1.5682 37 1 10.2591 -4.4578 2.2182 38 1 9.1314 -3.1194 2.5493 39 1 11.0773 -3.1877 4.1481 40 1 10.9854 -1.6679 3.2251 41 1 12.7448 -4.0608 2.5200 42 1 13.3088 -2.5591 3.2912 43 1 13.8438 -1.0197 -2.1058 44 1 11.7227 -2.4323 -0.6816 45 1 11.9476 -4.0115 0.1139 46 1 7.2403 0.0469 1.0120 47 1 7.3365 0.2595 -0.7614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869193869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:55 Heat of formation + Delta-G solvation = 7.448532 kcal Electronic energy + Delta-G solvation = -28416.156905 eV Core-core repulsion = 24562.712126 eV Total energy + Delta-G solvation = -3853.444779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63599 -40.83192 -38.67552 -37.95369 -36.70976 -35.34665 -34.12350 -33.13572 -32.58527 -31.44631 -29.54146 -28.50823 -26.97605 -26.02080 -23.96751 -23.38376 -22.93736 -22.07811 -21.45698 -20.43830 -19.30730 -18.84058 -18.15833 -17.50397 -16.97848 -16.59361 -16.53315 -15.99879 -15.74452 -15.24550 -15.16817 -15.07811 -15.03824 -14.61435 -14.50076 -14.28767 -14.14720 -13.93880 -13.79189 -13.76901 -13.70635 -13.48125 -13.25984 -12.82936 -12.68257 -12.58570 -12.36253 -12.24626 -12.21683 -12.02819 -11.81744 -11.78244 -11.58289 -11.16016 -10.89998 -10.78157 -10.47399 -10.12567 -9.84550 -9.53861 -9.20422 -8.06343 -6.23512 -0.22525 0.37876 1.43145 1.44325 1.52605 1.59314 1.82414 1.89984 2.30317 2.44643 2.79581 2.86584 3.06321 3.22820 3.45603 3.63055 3.96837 4.00721 4.10537 4.16357 4.19834 4.22335 4.33798 4.34942 4.64750 4.66096 4.66576 4.77286 4.78498 4.86190 4.88736 4.91562 5.00059 5.11877 5.15378 5.15884 5.23342 5.31377 5.31618 5.33440 5.38634 5.60117 5.60181 5.68023 5.71148 5.83459 5.95110 6.03455 6.23670 6.41063 6.43261 6.89699 7.21690 7.46148 7.77138 8.96249 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002155 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.525670 B =12988.360319 C =13689.059027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.284 3.716 3 C -0.043 4.043 4 C -0.060 4.060 5 C -0.112 4.112 6 C -0.062 4.062 7 C -0.097 4.097 8 C -0.047 4.047 9 C -0.073 4.073 10 C 0.163 3.837 11 H 0.076 0.924 12 N -0.723 5.723 13 C 0.695 3.305 14 O -0.636 6.636 15 N -0.628 5.628 16 C 0.110 3.890 17 C -0.126 4.126 18 C -0.105 4.105 19 C 0.038 3.962 20 H -0.016 1.016 21 C -0.537 4.537 22 H 0.061 0.939 23 C 0.009 3.991 24 N -0.912 5.912 25 Si 0.955 3.045 26 H -0.267 1.267 27 H -0.290 1.290 28 H -0.269 1.269 29 C 0.144 3.856 30 C -0.100 4.100 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.410 0.590 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.259 0.741 44 H 0.075 0.925 45 H 0.034 0.966 46 H 0.089 0.911 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.565 -1.587 8.690 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.030 4.030 3 C -0.046 4.046 4 C -0.080 4.080 5 C -0.130 4.130 6 C -0.063 4.063 7 C -0.098 4.098 8 C -0.067 4.067 9 C -0.110 4.110 10 C 0.057 3.943 11 H 0.094 0.906 12 N -0.383 5.383 13 C 0.396 3.604 14 O -0.517 6.517 15 N -0.364 5.364 16 C -0.012 4.012 17 C -0.164 4.164 18 C -0.143 4.143 19 C 0.019 3.981 20 H 0.003 0.997 21 C -0.575 4.575 22 H 0.079 0.921 23 C -0.190 4.190 24 N -0.551 5.551 25 Si 0.781 3.219 26 H -0.192 1.192 27 H -0.216 1.216 28 H -0.194 1.194 29 C 0.021 3.979 30 C -0.139 4.139 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.250 0.750 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.108 0.892 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.192 -1.174 7.750 22.595 hybrid contribution 1.709 0.280 -0.555 1.819 sum -19.482 -0.893 7.194 20.788 Atomic orbital electron populations 1.81296 1.13370 1.08800 1.10868 1.25811 0.92628 0.92407 0.92198 1.15829 0.83254 0.95926 1.09624 1.21241 0.93592 0.97243 0.95969 1.20768 0.93515 0.98146 1.00574 1.20854 0.95249 0.94278 0.95916 1.20324 0.93051 0.95642 1.00776 1.20676 0.92367 0.97416 0.96239 1.21222 0.89211 0.96553 1.04011 1.21338 0.85090 0.92250 0.95603 0.90600 1.45055 1.04317 1.68850 1.20062 1.16187 0.81610 0.78978 0.83604 1.90905 1.83727 1.52501 1.24572 1.47669 1.09483 1.62088 1.17123 1.21862 0.99932 0.99077 0.80336 1.21910 0.94479 1.00622 0.99428 1.21506 0.96530 1.00021 0.96232 1.18909 0.93240 0.93523 0.92466 0.99748 1.21496 0.97702 1.35198 1.03118 0.92088 1.25886 1.00933 0.94723 0.97465 1.70096 1.35747 1.36723 1.12535 0.85654 0.80385 0.78662 0.77224 1.19207 1.21592 1.19433 1.21537 0.78729 0.98030 0.99649 1.21542 0.92037 0.97260 1.03049 0.82949 0.83827 0.83071 0.87832 0.86802 0.74986 0.90206 0.87745 0.87829 0.93273 0.92441 0.93295 0.93223 0.90651 0.94814 0.89245 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.32 18.54 19.00 0.35 -9.97 16 2 C 0.28 4.75 15.33 88.33 1.35 6.10 16 3 C -0.04 -0.55 5.73 -21.39 -0.12 -0.67 16 4 C -0.06 -0.69 9.76 22.51 0.22 -0.47 16 5 C -0.11 -1.49 10.02 22.27 0.22 -1.26 16 6 C -0.06 -0.98 6.14 -19.50 -0.12 -1.10 16 7 C -0.10 -1.26 6.12 -19.61 -0.12 -1.38 16 8 C -0.05 -0.52 9.75 22.57 0.22 -0.30 16 9 C -0.07 -0.84 6.47 30.52 0.20 -0.65 16 10 C 0.16 3.43 3.32 45.89 0.15 3.58 16 11 H 0.08 2.01 7.78 -2.39 -0.02 2.00 16 12 N -0.72 -17.44 5.08 -453.54 -2.30 -19.74 16 13 C 0.69 26.37 8.29 179.05 1.48 27.86 16 14 O -0.64 -31.64 15.54 -3.99 -0.06 -31.70 16 15 N -0.63 -23.64 2.97 -836.91 -2.49 -26.12 16 16 C 0.11 2.75 6.38 86.36 0.55 3.30 16 17 C -0.13 -3.41 6.08 30.67 0.19 -3.23 16 18 C -0.11 -3.90 5.11 30.62 0.16 -3.74 16 19 C 0.04 1.89 2.25 -11.46 -0.03 1.86 16 20 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 21 C -0.54 -29.28 8.56 25.60 0.22 -29.06 16 22 H 0.06 3.19 7.74 -2.92 -0.02 3.17 16 23 C 0.01 0.53 5.30 84.65 0.45 0.98 16 24 N -0.91 -55.36 11.40 21.45 0.24 -55.12 16 25 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 C 0.14 7.01 5.41 86.36 0.47 7.48 16 30 C -0.10 -2.11 6.49 30.52 0.20 -1.91 16 31 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.11 0.81 7.78 -2.39 -0.02 0.80 16 36 H 0.41 6.65 5.86 -92.70 -0.54 6.11 16 37 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.10 1.68 5.66 -2.39 -0.01 1.67 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.08 4.47 5.12 -2.39 -0.01 4.45 16 45 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.81 384.69 3.92 -73.89 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.46 Total: 15.34 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.69 Total: 7.37 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -4.19 Total: -110.95 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.06 Total: -31.70 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -77.81 3.92 -73.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869193869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.335 kcal (2) G-P(sol) polarization free energy of solvation -77.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds