Wall clock time and date at job start Tue Mar 31 2020 22:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48506 * 109.47151 * 239.99831 * 3 2 1 5 5 H 1.48504 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47572 * 119.99423 * 3 2 1 7 7 C 1.39944 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99684 * 195.53141 * 7 2 1 9 9 C 1.41397 * 119.99926 * 15.53322 * 7 2 1 10 10 C 1.40563 * 120.07652 * 25.35371 * 9 7 2 11 11 C 1.37609 * 119.53870 * 180.12578 * 10 9 7 12 12 C 1.38435 * 120.14029 * 0.06961 * 11 10 9 13 13 C 1.39144 * 120.91848 * 359.97438 * 12 11 10 14 14 C 1.37251 * 119.86948 * 359.82089 * 13 12 11 15 15 C 1.50675 * 121.81182 * 180.33852 * 14 13 12 16 16 C 1.52894 * 109.99145 * 343.27352 * 15 14 13 17 17 N 1.47168 * 108.46498 * 50.18747 * 16 15 14 18 18 C 1.46904 * 111.00388 * 52.29635 * 17 16 15 19 19 C 1.50701 * 109.47444 * 170.00053 * 18 17 16 20 20 N 1.31187 * 125.97453 * 269.95763 * 19 18 17 21 21 N 1.40635 * 108.27444 * 180.11549 * 20 19 18 22 22 H 0.97006 * 126.13007 * 179.97438 * 21 20 19 23 23 C 1.33941 * 107.75534 * 359.86553 * 21 20 19 24 24 C 1.36141 * 107.89034 * 0.13255 * 23 21 20 25 25 C 1.50831 * 122.99841 * 179.85764 * 24 23 21 26 26 O 1.43426 * 107.98980 * 344.87875 * 25 24 23 27 27 C 1.42994 * 114.39543 * 50.79121 * 26 25 24 28 28 C 1.50889 * 129.25395 * 180.20272 * 23 21 20 29 29 C 1.46616 * 110.22396 * 288.89381 * 17 16 15 30 30 H 0.96997 * 119.99893 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.23236 * 0.11811 * 10 9 7 32 32 H 1.07996 * 119.92641 * 180.02562 * 11 10 9 33 33 H 1.07993 * 119.53964 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.38463 * 223.11289 * 15 14 13 35 35 H 1.09001 * 109.29520 * 103.38379 * 15 14 13 36 36 H 1.08995 * 109.64042 * 290.48835 * 16 15 14 37 37 H 1.09009 * 109.80425 * 169.97476 * 16 15 14 38 38 H 1.08998 * 109.47147 * 50.00248 * 18 17 16 39 39 H 1.08998 * 109.47243 * 290.00252 * 18 17 16 40 40 H 1.08996 * 109.76563 * 225.24232 * 25 24 23 41 41 H 1.08996 * 109.76522 * 104.52033 * 25 24 23 42 42 H 1.08995 * 109.44203 * 49.16920 * 27 26 25 43 43 H 1.09004 * 109.43472 * 169.08938 * 27 26 25 44 44 H 1.08999 * 109.81478 * 44.63741 * 28 23 21 45 45 H 1.09006 * 109.86718 * 283.77225 * 28 23 21 46 46 H 1.09005 * 109.27134 * 172.83598 * 29 17 16 47 47 H 1.08995 * 109.26817 * 292.30557 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0585 -1.2288 0.2510 9 6 1.3398 -2.4143 -0.3268 10 6 0.1931 -2.3842 -1.1392 11 6 -0.4501 -3.5606 -1.4488 12 6 0.0296 -4.7642 -0.9613 13 6 1.1630 -4.8084 -0.1554 14 6 1.8219 -3.6469 0.1618 15 6 3.0572 -3.6446 1.0245 16 6 3.1727 -4.9714 1.7755 17 7 3.0205 -6.0696 0.8077 18 6 3.9423 -5.9055 -0.3243 19 6 3.9367 -7.1579 -1.1624 20 7 4.7255 -8.1942 -1.0046 21 7 4.4036 -9.1472 -1.9875 22 1 4.8282 -10.0110 -2.1075 23 6 3.4039 -8.6494 -2.7271 24 6 3.0956 -7.4168 -2.2382 25 6 2.0120 -6.5475 -2.8257 26 8 1.6726 -7.0741 -4.1159 27 6 1.3895 -8.4757 -4.1259 28 6 2.6870 -9.2666 -3.9026 29 6 1.6310 -6.1497 0.3465 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1807 -1.4443 -1.5178 32 1 -1.3314 -3.5448 -2.0728 33 1 -0.4830 -5.6817 -1.2100 34 1 2.9957 -2.8267 1.7424 35 1 3.9362 -3.5077 0.3946 36 1 2.3877 -5.0355 2.5289 37 1 4.1485 -5.0397 2.2566 38 1 4.9495 -5.7238 0.0508 39 1 3.6232 -5.0595 -0.9330 40 1 2.3752 -5.5250 -2.9288 41 1 1.1351 -6.5636 -2.1786 42 1 0.6813 -8.7085 -3.3308 43 1 0.9582 -8.7517 -5.0882 44 1 2.4519 -10.3087 -3.6863 45 1 3.3141 -9.2066 -4.7921 46 1 1.5612 -6.8799 -0.4598 47 1 0.9952 -6.4658 1.1734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931333299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:27 Heat of formation + Delta-G solvation = 54.864026 kcal Electronic energy + Delta-G solvation = -30541.979261 eV Core-core repulsion = 26690.590572 eV Total energy + Delta-G solvation = -3851.388689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60404 -39.29600 -37.99629 -36.35349 -33.69307 -33.28584 -31.82387 -31.10210 -30.34837 -29.41830 -28.50513 -26.76948 -25.20586 -24.79233 -23.75703 -23.18213 -21.92102 -20.59328 -20.05026 -19.11406 -18.16088 -17.66057 -16.93084 -16.18846 -15.88121 -15.53536 -15.07346 -14.95901 -14.57647 -14.39468 -14.26937 -14.21233 -13.67369 -13.41584 -13.14379 -12.97197 -12.77173 -12.58349 -12.32533 -12.14863 -11.70578 -11.46513 -11.41651 -11.30272 -11.18540 -11.05307 -10.98601 -10.83546 -10.68869 -10.43455 -10.39791 -10.10891 -9.84223 -9.67832 -9.26023 -9.23410 -9.13988 -8.23420 -7.75171 -7.29770 -7.19981 -6.73945 -4.36595 1.84665 2.73318 2.78619 2.80345 2.93324 3.05957 3.08489 3.21976 3.90083 3.92215 4.38241 4.58010 4.61319 4.68616 4.81663 5.01827 5.06406 5.35583 5.42179 5.52664 5.57323 5.58880 5.62751 5.68409 5.83316 5.87936 5.94308 5.95883 6.04762 6.17553 6.19558 6.29154 6.36986 6.38767 6.50869 6.66024 6.68083 6.72022 6.92600 7.06152 7.21075 7.22048 7.29273 7.31346 7.48135 7.53654 7.64138 7.76917 7.91059 8.05695 8.11157 8.27849 8.63324 8.89105 8.97921 10.18872 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.003722 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.675938 B = 7520.446799 C = 8318.920879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.115 3.885 10 C -0.163 4.163 11 C -0.104 4.104 12 C -0.232 4.232 13 C -0.089 4.089 14 C -0.184 4.184 15 C -0.089 4.089 16 C 0.055 3.945 17 N -0.521 5.521 18 C 0.125 3.875 19 C 0.116 3.884 20 N -0.284 5.284 21 N -0.470 5.470 22 H 0.435 0.565 23 C 0.083 3.917 24 C -0.266 4.266 25 C 0.136 3.864 26 O -0.378 6.378 27 C 0.067 3.933 28 C -0.089 4.089 29 C 0.089 3.911 30 H 0.280 0.720 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -13.948 -4.858 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.183 4.183 11 C -0.122 4.122 12 C -0.251 4.251 13 C -0.091 4.091 14 C -0.185 4.185 15 C -0.127 4.127 16 C -0.073 4.073 17 N -0.243 5.243 18 C -0.004 4.004 19 C -0.050 4.050 20 N -0.107 5.107 21 N -0.176 5.176 22 H 0.278 0.722 23 C -0.048 4.048 24 C -0.279 4.279 25 C 0.059 3.941 26 O -0.296 6.296 27 C -0.011 4.011 28 C -0.128 4.128 29 C -0.039 4.039 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.871 -14.606 -4.052 15.921 hybrid contribution -0.327 1.220 -0.656 1.423 sum 4.544 -13.387 -4.708 14.900 Atomic orbital electron populations 1.69812 1.07512 1.29156 1.35505 1.25885 0.94699 1.01179 0.92334 0.86418 0.80165 0.80493 0.79953 1.18878 1.20409 1.19036 1.19537 0.97260 0.90875 1.41213 0.90449 1.17495 0.91313 0.91337 0.88639 1.21301 0.99037 0.96722 1.01220 1.20607 0.98442 0.93417 0.99744 1.20171 1.00579 0.96103 1.08297 1.19586 0.96601 0.93884 0.99006 1.19239 1.00542 0.92947 1.05809 1.20691 0.96341 0.97422 0.98268 1.22235 1.01497 0.89013 0.94579 1.62700 1.04707 1.43759 1.13142 1.20445 0.97942 0.90580 0.91448 1.21811 0.93160 0.95223 0.94825 1.77651 1.24228 0.99323 1.09526 1.45940 1.28864 1.17588 1.25224 0.72215 1.20719 0.92836 0.95123 0.96088 1.20585 1.06631 0.97814 1.02821 1.21389 0.94109 0.95783 0.82815 1.88034 1.89122 1.21738 1.30744 1.22524 0.93964 0.82045 1.02608 1.21072 0.97705 0.99725 0.94296 1.21156 0.88238 0.95024 0.99473 0.90919 0.86463 0.89637 0.89842 0.90979 0.92834 0.90805 0.91223 0.89861 0.90907 0.87852 0.90374 0.92597 0.88193 0.89501 0.89108 0.90518 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.12 10.87 55.55 0.60 -19.51 16 2 C 0.08 1.87 5.18 -17.34 -0.09 1.78 16 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -11.59 8.13 -37.74 -0.31 -11.89 16 8 H 0.08 1.88 6.98 -52.48 -0.37 1.51 16 9 C 0.11 2.88 5.58 -106.74 -0.60 2.29 16 10 C -0.16 -4.11 8.68 -38.94 -0.34 -4.45 16 11 C -0.10 -2.34 10.02 -39.74 -0.40 -2.74 16 12 C -0.23 -4.84 8.15 -39.17 -0.32 -5.16 16 13 C -0.09 -1.83 4.69 -104.66 -0.49 -2.32 16 14 C -0.18 -4.10 5.11 -103.91 -0.53 -4.63 16 15 C -0.09 -1.72 4.15 -27.95 -0.12 -1.84 16 16 C 0.05 0.91 6.03 -3.73 -0.02 0.89 16 17 N -0.52 -8.88 5.01 -237.62 -1.19 -10.07 16 18 C 0.13 2.10 4.40 -4.97 -0.02 2.08 16 19 C 0.12 1.91 6.12 -82.59 -0.51 1.40 16 20 N -0.28 -4.51 12.73 33.55 0.43 -4.08 16 21 N -0.47 -5.83 7.34 33.50 0.25 -5.58 16 22 H 0.43 3.73 8.96 -182.18 -1.63 2.09 16 23 C 0.08 1.06 7.20 -82.33 -0.59 0.47 16 24 C -0.27 -4.11 5.01 -105.03 -0.53 -4.64 16 25 C 0.14 2.16 6.13 36.07 0.22 2.38 16 26 O -0.38 -5.57 10.74 -35.23 -0.38 -5.95 16 27 C 0.07 0.69 6.79 37.46 0.25 0.94 16 28 C -0.09 -0.80 6.56 -27.49 -0.18 -0.98 16 29 C 0.09 1.58 5.18 -5.15 -0.03 1.56 16 30 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 31 H 0.12 3.09 6.13 -52.49 -0.32 2.77 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.08 1.58 7.48 -52.49 -0.39 1.18 16 34 H 0.07 1.46 7.35 -51.93 -0.38 1.08 16 35 H 0.05 1.01 7.07 -51.93 -0.37 0.65 16 36 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 37 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.07 1.34 5.90 -51.93 -0.31 1.03 16 40 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 41 H 0.08 1.29 4.04 -51.93 -0.21 1.08 16 42 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.33 4.08 -51.93 -0.21 1.12 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -28.74 358.11 -12.05 -40.80 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -7.54 Total: 10.53 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -4.59 Total: -24.87 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.09 Total: -39.25 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.38 Total: -5.95 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.74 -12.05 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931333299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.660 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds