Wall clock time and date at job start Tue Mar 31 2020 22:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48506 * 109.47151 * 239.99831 * 3 2 1 5 5 H 1.48504 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47572 * 119.99423 * 3 2 1 7 7 C 1.39944 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99684 * 195.53141 * 7 2 1 9 9 C 1.41397 * 119.99926 * 15.53322 * 7 2 1 10 10 C 1.40563 * 120.07652 * 25.35371 * 9 7 2 11 11 C 1.37609 * 119.53870 * 180.12578 * 10 9 7 12 12 C 1.38435 * 120.14029 * 0.06961 * 11 10 9 13 13 C 1.39144 * 120.91848 * 359.97438 * 12 11 10 14 14 C 1.37251 * 119.86948 * 359.82089 * 13 12 11 15 15 C 1.50675 * 121.81182 * 180.33852 * 14 13 12 16 16 C 1.52894 * 109.99145 * 343.27352 * 15 14 13 17 17 N 1.47168 * 108.46498 * 50.18747 * 16 15 14 18 18 C 1.46904 * 111.00388 * 52.29635 * 17 16 15 19 19 C 1.50701 * 109.47444 * 170.00053 * 18 17 16 20 20 N 1.31187 * 125.97453 * 269.95763 * 19 18 17 21 21 N 1.40635 * 108.27444 * 180.11549 * 20 19 18 22 22 H 0.97006 * 126.13007 * 179.97438 * 21 20 19 23 23 C 1.33941 * 107.75534 * 359.86553 * 21 20 19 24 24 C 1.36141 * 107.89034 * 0.13255 * 23 21 20 25 25 C 1.50831 * 122.99841 * 179.85764 * 24 23 21 26 26 O 1.43426 * 107.98980 * 344.87875 * 25 24 23 27 27 C 1.42994 * 114.39543 * 50.79121 * 26 25 24 28 28 C 1.50889 * 129.25395 * 180.20272 * 23 21 20 29 29 C 1.46616 * 110.22396 * 288.89381 * 17 16 15 30 30 H 0.96997 * 119.99893 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.23236 * 0.11811 * 10 9 7 32 32 H 1.07996 * 119.92641 * 180.02562 * 11 10 9 33 33 H 1.07993 * 119.53964 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.38463 * 223.11289 * 15 14 13 35 35 H 1.09001 * 109.29520 * 103.38379 * 15 14 13 36 36 H 1.08995 * 109.64042 * 290.48835 * 16 15 14 37 37 H 1.09009 * 109.80425 * 169.97476 * 16 15 14 38 38 H 1.08998 * 109.47147 * 50.00248 * 18 17 16 39 39 H 1.08998 * 109.47243 * 290.00252 * 18 17 16 40 40 H 1.08996 * 109.76563 * 225.24232 * 25 24 23 41 41 H 1.08996 * 109.76522 * 104.52033 * 25 24 23 42 42 H 1.08995 * 109.44203 * 49.16920 * 27 26 25 43 43 H 1.09004 * 109.43472 * 169.08938 * 27 26 25 44 44 H 1.08999 * 109.81478 * 44.63741 * 28 23 21 45 45 H 1.09006 * 109.86718 * 283.77225 * 28 23 21 46 46 H 1.09005 * 109.27134 * 172.83598 * 29 17 16 47 47 H 1.08995 * 109.26817 * 292.30557 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0585 -1.2288 0.2510 9 6 1.3398 -2.4143 -0.3268 10 6 0.1931 -2.3842 -1.1392 11 6 -0.4501 -3.5606 -1.4488 12 6 0.0296 -4.7642 -0.9613 13 6 1.1630 -4.8084 -0.1554 14 6 1.8219 -3.6469 0.1618 15 6 3.0572 -3.6446 1.0245 16 6 3.1727 -4.9714 1.7755 17 7 3.0205 -6.0696 0.8077 18 6 3.9423 -5.9055 -0.3243 19 6 3.9367 -7.1579 -1.1624 20 7 4.7255 -8.1942 -1.0046 21 7 4.4036 -9.1472 -1.9875 22 1 4.8282 -10.0110 -2.1075 23 6 3.4039 -8.6494 -2.7271 24 6 3.0956 -7.4168 -2.2382 25 6 2.0120 -6.5475 -2.8257 26 8 1.6726 -7.0741 -4.1159 27 6 1.3895 -8.4757 -4.1259 28 6 2.6870 -9.2666 -3.9026 29 6 1.6310 -6.1497 0.3465 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1807 -1.4443 -1.5178 32 1 -1.3314 -3.5448 -2.0728 33 1 -0.4830 -5.6817 -1.2100 34 1 2.9957 -2.8267 1.7424 35 1 3.9362 -3.5077 0.3946 36 1 2.3877 -5.0355 2.5289 37 1 4.1485 -5.0397 2.2566 38 1 4.9495 -5.7238 0.0508 39 1 3.6232 -5.0595 -0.9330 40 1 2.3752 -5.5250 -2.9288 41 1 1.1351 -6.5636 -2.1786 42 1 0.6813 -8.7085 -3.3308 43 1 0.9582 -8.7517 -5.0882 44 1 2.4519 -10.3087 -3.6863 45 1 3.3141 -9.2066 -4.7921 46 1 1.5612 -6.8799 -0.4598 47 1 0.9952 -6.4658 1.1734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931333299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:26 Heat of formation + Delta-G solvation = 36.612561 kcal Electronic energy + Delta-G solvation = -30542.770704 eV Core-core repulsion = 26690.590572 eV Total energy + Delta-G solvation = -3852.180132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.70371 -40.85294 -39.03310 -37.98603 -35.48805 -34.43234 -33.16502 -32.42130 -31.72105 -30.72047 -30.14479 -28.15095 -26.98804 -25.95532 -24.89720 -24.45672 -23.45497 -22.35354 -21.34888 -20.19113 -19.64452 -18.80859 -18.62818 -17.36140 -17.20752 -16.94813 -16.48934 -16.39186 -15.97109 -15.81598 -15.51361 -15.37025 -15.03419 -14.85064 -14.47324 -14.34224 -14.12518 -13.97485 -13.67187 -13.50313 -13.25187 -13.05807 -12.88706 -12.74005 -12.65304 -12.55726 -12.39829 -12.15009 -12.06130 -11.87557 -11.76910 -11.59759 -11.48923 -11.00377 -10.96753 -10.71514 -10.34982 -9.35826 -9.21166 -9.12783 -8.96641 -8.55691 -6.27197 0.79558 1.03474 1.13838 1.38065 1.47982 1.54493 1.55357 1.84110 2.21504 2.78361 2.91922 3.17013 3.52128 3.67320 3.74604 3.90763 4.04912 4.13729 4.18527 4.27319 4.34112 4.34519 4.45819 4.50146 4.55455 4.64088 4.66293 4.70863 4.77911 4.79830 4.82314 4.90606 4.95755 4.98355 5.08769 5.17367 5.20552 5.22384 5.30752 5.42875 5.50130 5.52882 5.81416 5.97330 6.07995 6.13774 6.22466 6.24145 6.31640 6.40284 6.45833 6.66770 6.77891 7.02194 7.13691 8.38611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.003722 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.675938 B = 7520.446799 C = 8318.920879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.036 3.964 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.076 0.924 9 C 0.083 3.917 10 C -0.193 4.193 11 C -0.112 4.112 12 C -0.223 4.223 13 C -0.085 4.085 14 C -0.192 4.192 15 C -0.083 4.083 16 C 0.061 3.939 17 N -0.514 5.514 18 C 0.131 3.869 19 C 0.102 3.898 20 N -0.307 5.307 21 N -0.452 5.452 22 H 0.453 0.547 23 C 0.101 3.899 24 C -0.298 4.298 25 C 0.149 3.851 26 O -0.399 6.399 27 C 0.055 3.945 28 C -0.082 4.082 29 C 0.096 3.904 30 H 0.284 0.716 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -16.922 -5.295 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.519 4.519 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.213 4.213 11 C -0.130 4.130 12 C -0.243 4.243 13 C -0.086 4.086 14 C -0.194 4.194 15 C -0.121 4.121 16 C -0.067 4.067 17 N -0.236 5.236 18 C 0.002 3.998 19 C -0.063 4.063 20 N -0.132 5.132 21 N -0.161 5.161 22 H 0.300 0.700 23 C -0.031 4.031 24 C -0.310 4.310 25 C 0.072 3.928 26 O -0.318 6.318 27 C -0.022 4.022 28 C -0.121 4.121 29 C -0.032 4.032 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.126 0.874 46 H 0.104 0.896 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.701 -17.618 -4.482 19.052 hybrid contribution -0.605 1.924 -0.627 2.112 sum 5.096 -15.693 -5.109 17.273 Atomic orbital electron populations 1.69889 1.08881 1.30099 1.36691 1.26664 0.95386 1.04213 0.91563 0.85384 0.78846 0.76359 0.79942 1.18822 1.19589 1.18309 1.19745 0.97398 0.91928 1.42840 0.90555 1.17863 0.91946 0.92719 0.89397 1.21242 1.00336 0.96799 1.02934 1.20834 0.98874 0.93344 0.99965 1.20475 1.00382 0.96350 1.07048 1.19909 0.95904 0.94806 0.97986 1.19624 1.01403 0.92663 1.05680 1.20644 0.95028 0.98706 0.97735 1.22251 1.03048 0.87184 0.94184 1.62750 1.04231 1.43384 1.13220 1.20312 0.97962 0.90529 0.91013 1.21705 0.93999 0.95263 0.95377 1.77565 1.24651 0.99890 1.11071 1.45927 1.28375 1.17742 1.24015 0.70012 1.21239 0.91772 0.94119 0.95998 1.20612 1.07477 0.99264 1.03692 1.20976 0.93858 0.94646 0.83344 1.87998 1.89298 1.24609 1.29892 1.22905 0.94986 0.79837 1.04478 1.21245 0.96616 1.01140 0.93112 1.21138 0.88816 0.93291 0.99927 0.90552 0.88678 0.88075 0.87282 0.92314 0.92777 0.90651 0.88631 0.89193 0.93246 0.91145 0.91417 0.92371 0.85193 0.85665 0.87388 0.89601 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.00 10.87 21.83 0.24 -43.77 16 2 C 0.04 1.82 5.18 85.26 0.44 2.26 16 3 Si 0.97 38.83 29.59 68.60 2.03 40.86 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.49 -25.95 8.13 23.46 0.19 -25.75 16 8 H 0.08 3.89 6.98 -2.91 -0.02 3.87 16 9 C 0.08 4.39 5.58 -21.24 -0.12 4.27 16 10 C -0.19 -10.27 8.68 22.69 0.20 -10.07 16 11 C -0.11 -5.20 10.02 22.17 0.22 -4.98 16 12 C -0.22 -9.32 8.15 22.53 0.18 -9.13 16 13 C -0.08 -3.48 4.69 -19.89 -0.09 -3.58 16 14 C -0.19 -8.84 5.11 -19.41 -0.10 -8.94 16 15 C -0.08 -3.27 4.15 29.80 0.12 -3.14 16 16 C 0.06 1.98 6.03 86.22 0.52 2.50 16 17 N -0.51 -16.95 5.01 -905.68 -4.54 -21.49 16 18 C 0.13 4.36 4.40 85.56 0.38 4.74 16 19 C 0.10 3.24 6.12 42.84 0.26 3.51 16 20 N -0.31 -9.18 12.73 -47.76 -0.61 -9.79 16 21 N -0.45 -9.81 7.34 -47.91 -0.35 -10.16 16 22 H 0.45 6.06 8.96 -212.97 -1.91 4.15 16 23 C 0.10 2.28 7.20 41.81 0.30 2.58 16 24 C -0.30 -8.84 5.01 -20.13 -0.10 -8.94 16 25 C 0.15 4.73 6.13 71.28 0.44 5.16 16 26 O -0.40 -11.28 10.74 -148.98 -1.60 -12.88 16 27 C 0.05 0.96 6.79 72.18 0.49 1.45 16 28 C -0.08 -1.13 6.56 30.10 0.20 -0.93 16 29 C 0.10 3.32 5.18 85.60 0.44 3.77 16 30 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 31 H 0.10 5.38 6.13 -2.91 -0.02 5.36 16 32 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 33 H 0.11 3.97 7.48 -2.91 -0.02 3.95 16 34 H 0.06 2.46 7.35 -2.39 -0.02 2.44 16 35 H 0.05 2.11 7.07 -2.39 -0.02 2.09 16 36 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 37 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 38 H 0.09 2.81 8.08 -2.39 -0.02 2.79 16 39 H 0.05 1.87 5.90 -2.39 -0.01 1.86 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.07 2.21 4.04 -2.39 -0.01 2.20 16 42 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 43 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.09 2.86 4.08 -2.38 -0.01 2.85 16 47 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -65.66 358.11 -1.74 -67.40 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.88 Total: 35.05 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 3.97 Total: -45.24 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -5.26 Total: -85.20 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.60 Total: -12.88 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -65.66 -1.74 -67.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931333299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.014 kcal (2) G-P(sol) polarization free energy of solvation -65.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds