Wall clock time and date at job start Tue Mar 31 2020 23:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99691 * 3 2 1 6 6 H 1.48503 * 109.47166 * 149.99922 * 3 2 1 7 7 C 1.38824 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46497 * 113.58023 * 270.12860 * 15 14 12 17 17 C 1.34782 * 120.00156 * 252.71922 * 16 15 14 18 18 O 1.21669 * 119.99676 * 0.02562 * 17 16 15 19 19 C 1.46907 * 120.00223 * 179.97438 * 17 16 15 20 20 C 1.36377 * 126.76657 * 0.02696 * 19 17 16 21 21 N 1.35471 * 109.77014 * 180.02562 * 20 19 17 22 22 H 0.97001 * 124.79246 * 179.97438 * 21 20 19 23 23 C 1.37969 * 110.42707 * 359.97438 * 21 20 19 24 24 C 1.39110 * 133.19249 * 179.97438 * 23 21 20 25 25 C 1.37760 * 119.93330 * 179.97438 * 24 23 21 26 26 C 1.38755 * 120.63616 * 0.02562 * 25 24 23 27 27 C 1.37757 * 120.29602 * 359.97438 * 26 25 24 28 28 C 1.39280 * 119.67285 * 359.65084 * 27 26 25 29 29 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 30 30 H 0.96993 * 119.99847 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 32 32 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 33 33 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 34 34 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 35 35 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 36 36 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 37 37 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 38 38 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 39 39 H 1.09008 * 113.58062 * 139.33642 * 15 14 12 40 40 H 0.96996 * 120.00134 * 72.71944 * 16 15 14 41 41 H 1.07997 * 125.11872 * 0.02562 * 20 19 17 42 42 H 1.08002 * 120.03484 * 359.97438 * 24 23 21 43 43 H 1.08007 * 119.68745 * 179.97438 * 25 24 23 44 44 H 1.07993 * 119.85067 * 179.97438 * 26 25 24 45 45 H 1.08007 * 120.16077 * 179.97438 * 27 26 25 46 46 H 1.08999 * 113.66373 * 265.09616 * 29 12 11 47 47 H 1.09007 * 113.66161 * 36.05500 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2023 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.5272 -2.3645 0.5990 12 6 5.9800 -3.2901 -0.5309 13 6 4.7836 -2.7956 -1.3446 14 6 6.2080 -4.7823 -0.2871 15 6 7.2580 -4.7169 -1.4111 16 7 6.7081 -4.9816 -2.7429 17 6 6.9774 -6.1472 -3.3637 18 8 7.6768 -6.9798 -2.8178 19 6 6.4256 -6.4129 -4.6990 20 6 5.6304 -5.5834 -5.4335 21 7 5.3204 -6.1722 -6.6135 22 1 4.7653 -5.7735 -7.3020 23 6 5.9054 -7.4188 -6.6981 24 6 5.9010 -8.4083 -7.6759 25 6 6.5972 -9.5794 -7.4718 26 6 7.3059 -9.7851 -6.2968 27 6 7.3225 -8.8172 -5.3167 28 6 6.6294 -7.6252 -5.5131 29 6 7.4011 -3.2179 -1.0907 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3622 0.0007 32 1 3.5285 -3.2969 0.4087 33 1 5.6183 -2.8078 1.5906 34 1 5.9537 -1.3631 0.5416 35 1 4.9997 -1.9148 -1.9492 36 1 4.2805 -3.5832 -1.9056 37 1 6.6294 -5.0062 0.6928 38 1 5.3450 -5.4022 -0.5302 39 1 8.1578 -5.2954 -1.2014 40 1 6.1503 -4.3180 -3.1779 41 1 5.2978 -4.6045 -5.1214 42 1 5.3523 -8.2586 -8.5940 43 1 6.5907 -10.3452 -8.2335 44 1 7.8469 -10.7082 -6.1500 45 1 7.8745 -8.9799 -4.4027 46 1 7.4912 -2.5880 -1.9757 47 1 8.1578 -3.0004 -0.3368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964249713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:24 Heat of formation + Delta-G solvation = 80.537088 kcal Electronic energy + Delta-G solvation = -28219.491289 eV Core-core repulsion = 24369.215867 eV Total energy + Delta-G solvation = -3850.275421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71782 -40.61822 -38.73745 -37.20916 -35.89334 -33.55418 -32.54661 -31.90784 -30.26335 -29.79197 -29.04359 -25.79580 -25.35832 -24.54197 -23.47488 -23.22665 -22.08859 -21.69525 -20.04083 -19.90789 -18.46635 -18.01577 -17.36115 -16.80226 -16.53145 -15.88970 -15.62812 -15.40362 -15.14326 -14.85002 -14.39851 -14.29854 -14.11330 -14.06267 -13.90572 -13.40079 -12.94968 -12.86062 -12.65835 -12.60191 -12.16806 -12.00378 -11.93423 -11.79705 -11.52600 -11.26412 -11.18234 -10.98018 -10.85374 -10.24300 -10.04001 -9.99173 -9.97023 -9.80424 -9.72000 -9.45435 -9.01973 -8.90474 -8.60136 -8.05616 -7.29501 -5.81432 -3.16694 0.71914 1.28571 1.79092 2.65311 3.12310 3.27689 3.33115 3.36100 3.41562 3.72762 4.35426 4.45807 4.54504 4.55480 4.61659 4.66083 4.73746 4.81877 4.90255 4.93038 5.15303 5.21185 5.27921 5.37829 5.39183 5.43828 5.60659 5.66807 5.74070 5.75139 5.81566 5.85210 5.88732 6.02644 6.11590 6.12417 6.16564 6.21210 6.23108 6.26084 6.36648 6.40692 6.44912 6.61010 6.80280 6.81515 6.97822 7.03120 7.53295 7.95884 8.26570 8.38626 9.16715 9.89421 10.09654 11.36905 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.002347 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.502529 B =11925.331294 C =13180.874336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.738 5.738 10 C 0.175 3.825 11 C -0.142 4.142 12 C -0.105 4.105 13 C -0.144 4.144 14 C -0.126 4.126 15 C 0.126 3.874 16 N -0.708 5.708 17 C 0.592 3.408 18 O -0.545 6.545 19 C -0.228 4.228 20 C 0.113 3.887 21 N -0.578 5.578 22 H 0.421 0.579 23 C 0.084 3.916 24 C -0.128 4.128 25 C -0.101 4.101 26 C -0.143 4.143 27 C -0.063 4.063 28 C -0.062 4.062 29 C -0.133 4.133 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.399 0.601 41 H 0.180 0.820 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.070 0.930 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.460 -14.766 -14.551 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.064 3.936 11 C -0.181 4.181 12 C -0.105 4.105 13 C -0.185 4.185 14 C -0.165 4.165 15 C 0.020 3.980 16 N -0.358 5.358 17 C 0.381 3.619 18 O -0.423 6.423 19 C -0.239 4.239 20 C -0.020 4.020 21 N -0.179 5.179 22 H 0.259 0.741 23 C -0.021 4.021 24 C -0.148 4.148 25 C -0.120 4.120 26 C -0.162 4.162 27 C -0.082 4.082 28 C -0.066 4.066 29 C -0.171 4.171 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.234 0.766 41 H 0.197 0.803 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.151 0.849 46 H 0.089 0.911 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.607 -15.352 -14.218 26.714 hybrid contribution -0.150 1.953 -0.569 2.039 sum 16.456 -13.400 -14.787 25.865 Atomic orbital electron populations 1.69703 1.05122 1.25846 1.57432 1.24706 0.95258 0.97250 1.02020 0.86546 0.79245 0.84991 0.77721 1.21147 1.21730 1.20301 1.19148 0.80757 0.94715 1.43011 0.89192 1.42778 1.04038 1.02071 1.88844 1.21492 0.89605 0.89755 0.92727 1.23304 0.98794 0.98822 0.97196 1.22354 0.94015 0.95170 0.98996 1.23574 0.95138 0.99971 0.99789 1.23132 0.99379 0.95315 0.98653 1.21808 0.97259 0.96945 0.81975 1.45507 1.53192 1.18747 1.18384 1.17186 0.79592 0.81380 0.83723 1.90753 1.38910 1.45715 1.66913 1.20038 1.09949 0.96980 0.96950 1.22180 0.96388 0.98153 0.85321 1.41551 1.44466 1.14564 1.17304 0.74118 1.18272 0.99160 0.87307 0.97408 1.20015 1.03691 0.93105 0.97996 1.20829 0.97115 0.96351 0.97705 1.20997 1.01464 0.99593 0.94106 1.20724 0.97083 0.91101 0.99262 1.18745 1.00242 0.94612 0.93026 1.23159 0.97767 0.95026 1.01130 0.93049 0.80518 0.90023 0.91878 0.90529 0.90335 0.92359 0.89174 0.90921 0.88236 0.76619 0.80253 0.86088 0.85620 0.85746 0.84869 0.91146 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.97 55.49 0.78 -28.15 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.25 -6.79 10.45 -15.05 -0.16 -6.95 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.74 -16.85 5.20 -52.47 -0.27 -17.13 16 10 C 0.18 3.19 4.48 -66.95 -0.30 2.89 16 11 C -0.14 -2.10 7.59 -26.28 -0.20 -2.30 16 12 C -0.10 -1.31 1.02 -154.71 -0.16 -1.47 16 13 C -0.14 -2.12 6.97 -26.28 -0.18 -2.31 16 14 C -0.13 -1.51 7.64 -26.28 -0.20 -1.71 16 15 C 0.13 1.43 4.31 -66.95 -0.29 1.14 16 16 N -0.71 -7.83 5.24 -54.09 -0.28 -8.11 16 17 C 0.59 7.84 7.80 -12.75 -0.10 7.74 16 18 O -0.54 -8.96 15.76 5.22 0.08 -8.87 16 19 C -0.23 -2.65 6.27 -103.31 -0.65 -3.30 16 20 C 0.11 0.93 11.33 -16.62 -0.19 0.74 16 21 N -0.58 -4.27 5.99 -10.48 -0.06 -4.34 16 22 H 0.42 1.73 8.96 -40.82 -0.37 1.36 16 23 C 0.08 0.82 7.26 -83.97 -0.61 0.21 16 24 C -0.13 -1.05 10.07 -39.43 -0.40 -1.45 16 25 C -0.10 -0.81 10.01 -39.56 -0.40 -1.20 16 26 C -0.14 -1.30 10.03 -39.57 -0.40 -1.70 16 27 C -0.06 -0.73 9.85 -39.37 -0.39 -1.12 16 28 C -0.06 -0.75 6.27 -104.95 -0.66 -1.40 16 29 C -0.13 -1.40 7.59 -26.29 -0.20 -1.60 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.36 8.13 5.78 -40.82 -0.24 7.90 16 32 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 35 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 36 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.21 7.47 -51.92 -0.39 0.83 16 40 H 0.40 3.70 6.89 -40.82 -0.28 3.41 16 41 H 0.18 0.91 7.38 -52.49 -0.39 0.53 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.13 1.63 7.45 -52.48 -0.39 1.24 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -34.92 386.71 -10.92 -45.85 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.71 Total: 11.77 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -5.56 Total: -13.79 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.16 Total: -57.73 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.92 -10.92 -45.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964249713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.382 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds