Wall clock time and date at job start Tue Mar 31 2020 22:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99691 * 3 2 1 6 6 H 1.48503 * 109.47166 * 149.99922 * 3 2 1 7 7 C 1.38824 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46497 * 113.58023 * 270.12860 * 15 14 12 17 17 C 1.34782 * 120.00156 * 252.71922 * 16 15 14 18 18 O 1.21591 * 119.99592 * 0.02562 * 17 16 15 19 19 C 1.47502 * 120.00045 * 179.97438 * 17 16 15 20 20 C 1.39350 * 120.20961 * 359.72907 * 19 17 16 21 21 C 1.38324 * 120.49612 * 179.76449 * 20 19 17 22 22 C 1.37913 * 120.59044 * 0.51051 * 21 20 19 23 23 C 1.39535 * 119.98816 * 359.74662 * 22 21 20 24 24 C 1.46575 * 133.95281 * 180.02562 * 23 22 21 25 25 C 1.34214 * 106.89202 * 179.97438 * 24 23 22 26 26 N 1.36898 * 109.88279 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.02009 * 180.02562 * 26 25 24 28 28 C 1.37123 * 109.97374 * 359.97438 * 26 25 24 29 29 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 30 30 H 0.96993 * 119.99847 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 32 32 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 33 33 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 34 34 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 35 35 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 36 36 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 37 37 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 38 38 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 39 39 H 1.09008 * 113.58062 * 139.33642 * 15 14 12 40 40 H 0.96996 * 120.00134 * 72.71944 * 16 15 14 41 41 H 1.08001 * 119.74813 * 359.97438 * 20 19 17 42 42 H 1.08001 * 119.70293 * 180.25247 * 21 20 19 43 43 H 1.07996 * 120.00650 * 179.76648 * 22 21 20 44 44 H 1.08002 * 126.55062 * 359.97438 * 24 23 22 45 45 H 1.08000 * 125.05604 * 179.97438 * 25 24 23 46 46 H 1.08999 * 113.66373 * 265.09616 * 29 12 11 47 47 H 1.09000 * 113.66011 * 36.14689 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2023 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.5272 -2.3645 0.5990 12 6 5.9800 -3.2901 -0.5309 13 6 4.7836 -2.7956 -1.3446 14 6 6.2080 -4.7823 -0.2871 15 6 7.2580 -4.7169 -1.4111 16 7 6.7081 -4.9816 -2.7429 17 6 6.9774 -6.1472 -3.3637 18 8 7.6764 -6.9792 -2.8181 19 6 6.4233 -6.4140 -4.7044 20 6 5.6163 -5.4662 -5.3308 21 6 5.0976 -5.7082 -6.5901 22 6 5.3615 -6.8946 -7.2418 23 6 6.1625 -7.8615 -6.6331 24 6 6.6305 -9.1923 -7.0309 25 6 7.3842 -9.6581 -6.0228 26 7 7.4353 -8.7340 -5.0141 27 1 7.9200 -8.8452 -4.1813 28 6 6.7009 -7.6273 -5.3552 29 6 7.4011 -3.2179 -1.0907 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3622 0.0007 32 1 3.5285 -3.2969 0.4087 33 1 5.6183 -2.8078 1.5906 34 1 5.9537 -1.3631 0.5416 35 1 4.9997 -1.9148 -1.9492 36 1 4.2805 -3.5832 -1.9056 37 1 6.6294 -5.0062 0.6928 38 1 5.3450 -5.4022 -0.5302 39 1 8.1578 -5.2954 -1.2014 40 1 6.1503 -4.3180 -3.1779 41 1 5.3970 -4.5344 -4.8307 42 1 4.4769 -4.9630 -7.0654 43 1 4.9485 -7.0752 -8.2232 44 1 6.4107 -9.7009 -7.9580 45 1 7.8765 -10.6193 -6.0091 46 1 7.4912 -2.5880 -1.9757 47 1 8.1579 -3.0020 -0.3365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965212009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:42 Heat of formation + Delta-G solvation = 81.739713 kcal Electronic energy + Delta-G solvation = -28454.369708 eV Core-core repulsion = 24604.146437 eV Total energy + Delta-G solvation = -3850.223271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64398 -40.71007 -39.06258 -37.02667 -35.97970 -33.64125 -32.61332 -31.82739 -30.24231 -29.70873 -28.95830 -25.85529 -25.38893 -24.79554 -23.89866 -22.33332 -22.00293 -21.28970 -20.59455 -20.01409 -18.41840 -17.95216 -17.42331 -17.31031 -16.41733 -16.07643 -15.47489 -15.21621 -15.11567 -14.79759 -14.53849 -14.33152 -14.12785 -14.06937 -13.65039 -13.34287 -13.01111 -12.82545 -12.68156 -12.63769 -12.21693 -12.08216 -11.88582 -11.80923 -11.68149 -11.54502 -11.20127 -11.01451 -10.84914 -10.24232 -10.13193 -10.03040 -10.01611 -9.85219 -9.72069 -9.47740 -9.13983 -8.90230 -8.52353 -8.03318 -7.28487 -5.79848 -3.15287 0.43934 1.36721 2.23867 2.84468 2.94530 2.97634 3.34791 3.37512 3.43008 3.70458 4.37603 4.44354 4.53975 4.55951 4.57195 4.65929 4.71663 4.75580 4.83320 4.96852 5.10751 5.19041 5.24553 5.38254 5.49789 5.56007 5.59772 5.62103 5.64711 5.69315 5.73326 5.78823 5.84045 5.95408 6.01907 6.06591 6.13058 6.20034 6.24491 6.24751 6.37591 6.42075 6.44315 6.52185 6.77667 6.83634 6.96740 7.27541 7.38761 7.97176 8.02565 8.40096 9.18000 9.90643 10.10713 11.38474 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.002466 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.988308 B =11352.782129 C =12594.555190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.737 5.737 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.105 4.105 13 C -0.145 4.145 14 C -0.126 4.126 15 C 0.122 3.878 16 N -0.701 5.701 17 C 0.567 3.433 18 O -0.558 6.558 19 C -0.154 4.154 20 C -0.055 4.055 21 C -0.157 4.157 22 C -0.040 4.040 23 C -0.124 4.124 24 C -0.204 4.204 25 C 0.048 3.952 26 N -0.580 5.580 27 H 0.426 0.574 28 C 0.151 3.849 29 C -0.133 4.133 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.404 0.596 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.172 0.828 46 H 0.071 0.929 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.082 -16.323 -12.854 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.065 3.935 11 C -0.181 4.181 12 C -0.106 4.106 13 C -0.186 4.186 14 C -0.164 4.164 15 C 0.017 3.983 16 N -0.351 5.351 17 C 0.356 3.644 18 O -0.438 6.438 19 C -0.159 4.159 20 C -0.075 4.075 21 C -0.177 4.177 22 C -0.059 4.059 23 C -0.129 4.129 24 C -0.228 4.228 25 C -0.078 4.078 26 N -0.183 5.183 27 H 0.266 0.734 28 C 0.040 3.960 29 C -0.171 4.171 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.240 0.760 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.166 0.834 45 H 0.189 0.811 46 H 0.090 0.910 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.378 -16.995 -12.311 27.895 hybrid contribution 0.438 1.549 0.172 1.619 sum 18.816 -15.446 -12.139 27.202 Atomic orbital electron populations 1.69702 1.05122 1.25855 1.57375 1.24703 0.95254 0.97244 1.01972 0.86549 0.79214 0.84995 0.77764 1.21080 1.21729 1.20335 1.19146 0.80727 0.94735 1.43091 0.89179 1.42772 1.04060 1.02037 1.88823 1.21481 0.89567 0.89803 0.92666 1.23304 0.98855 0.98807 0.97100 1.22361 0.94016 0.95064 0.99155 1.23596 0.95043 1.00094 0.99846 1.23127 0.99252 0.95520 0.98522 1.21868 0.97290 0.97245 0.81905 1.45579 1.52517 1.18694 1.18324 1.18167 0.79710 0.81654 0.84829 1.90661 1.39675 1.45988 1.67461 1.18876 1.06683 0.94715 0.95667 1.21115 0.93997 0.97431 0.94919 1.20854 1.03195 0.98110 0.95502 1.20744 0.94383 0.91742 0.98990 1.19236 1.02854 0.96358 0.94428 1.21701 1.05260 0.95049 1.00830 1.21946 1.02026 0.95263 0.88596 1.41985 1.43863 1.13583 1.18839 0.73388 1.17934 0.95248 0.88343 0.94486 1.23162 0.97886 0.94790 1.01219 0.93037 0.80504 0.90024 0.91880 0.90467 0.90208 0.92296 0.89103 0.90916 0.88268 0.75952 0.85174 0.84999 0.85439 0.83355 0.81098 0.91014 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 21.82 27.74 -169.99 -4.71 17.10 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.25 -6.86 10.45 -15.05 -0.16 -7.02 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.00 5.20 -52.47 -0.27 -17.27 16 10 C 0.18 3.24 4.48 -66.95 -0.30 2.94 16 11 C -0.14 -2.11 7.59 -26.28 -0.20 -2.30 16 12 C -0.11 -1.33 1.02 -154.71 -0.16 -1.49 16 13 C -0.14 -2.19 6.97 -26.28 -0.18 -2.38 16 14 C -0.13 -1.49 7.64 -26.28 -0.20 -1.69 16 15 C 0.12 1.38 4.31 -66.95 -0.29 1.09 16 16 N -0.70 -7.91 5.21 -53.90 -0.28 -8.19 16 17 C 0.57 7.30 7.76 -12.48 -0.10 7.21 16 18 O -0.56 -8.32 14.76 5.29 0.08 -8.24 16 19 C -0.15 -1.83 5.88 -104.87 -0.62 -2.44 16 20 C -0.05 -0.55 9.52 -39.14 -0.37 -0.92 16 21 C -0.16 -1.43 10.00 -39.67 -0.40 -1.83 16 22 C -0.04 -0.37 10.09 -39.22 -0.40 -0.76 16 23 C -0.12 -1.32 6.37 -105.15 -0.67 -1.99 16 24 C -0.20 -1.75 11.09 -37.64 -0.42 -2.17 16 25 C 0.05 0.38 11.82 -16.71 -0.20 0.18 16 26 N -0.58 -5.95 5.87 -10.45 -0.06 -6.01 16 27 H 0.43 4.27 7.54 -40.82 -0.31 3.96 16 28 C 0.15 1.80 6.87 -83.76 -0.58 1.23 16 29 C -0.13 -1.41 7.59 -26.29 -0.20 -1.61 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.36 8.20 5.78 -40.82 -0.24 7.97 16 32 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 35 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.17 7.47 -51.92 -0.39 0.79 16 40 H 0.40 4.07 6.03 -40.82 -0.25 3.83 16 41 H 0.13 1.08 6.38 -52.49 -0.33 0.75 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -33.69 383.40 -10.81 -44.51 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -6.59 Total: 14.58 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -5.52 Total: -13.94 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.16 Total: -59.78 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.69 -10.81 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965212009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.245 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds