Wall clock time and date at job start Tue Mar 31 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99691 * 3 2 1 6 6 H 1.48503 * 109.47166 * 149.99922 * 3 2 1 7 7 C 1.38824 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46497 * 113.58023 * 270.12860 * 15 14 12 17 17 C 1.34782 * 120.00156 * 252.71922 * 16 15 14 18 18 O 1.21591 * 119.99592 * 0.02562 * 17 16 15 19 19 C 1.47502 * 120.00045 * 179.97438 * 17 16 15 20 20 C 1.39350 * 120.20961 * 359.72907 * 19 17 16 21 21 C 1.38324 * 120.49612 * 179.76449 * 20 19 17 22 22 C 1.37913 * 120.59044 * 0.51051 * 21 20 19 23 23 C 1.39535 * 119.98816 * 359.74662 * 22 21 20 24 24 C 1.46575 * 133.95281 * 180.02562 * 23 22 21 25 25 C 1.34214 * 106.89202 * 179.97438 * 24 23 22 26 26 N 1.36898 * 109.88279 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.02009 * 180.02562 * 26 25 24 28 28 C 1.37123 * 109.97374 * 359.97438 * 26 25 24 29 29 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 30 30 H 0.96993 * 119.99847 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 32 32 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 33 33 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 34 34 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 35 35 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 36 36 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 37 37 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 38 38 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 39 39 H 1.09008 * 113.58062 * 139.33642 * 15 14 12 40 40 H 0.96996 * 120.00134 * 72.71944 * 16 15 14 41 41 H 1.08001 * 119.74813 * 359.97438 * 20 19 17 42 42 H 1.08001 * 119.70293 * 180.25247 * 21 20 19 43 43 H 1.07996 * 120.00650 * 179.76648 * 22 21 20 44 44 H 1.08002 * 126.55062 * 359.97438 * 24 23 22 45 45 H 1.08000 * 125.05604 * 179.97438 * 25 24 23 46 46 H 1.08999 * 113.66373 * 265.09616 * 29 12 11 47 47 H 1.09000 * 113.66011 * 36.14689 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2023 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.5272 -2.3645 0.5990 12 6 5.9800 -3.2901 -0.5309 13 6 4.7836 -2.7956 -1.3446 14 6 6.2080 -4.7823 -0.2871 15 6 7.2580 -4.7169 -1.4111 16 7 6.7081 -4.9816 -2.7429 17 6 6.9774 -6.1472 -3.3637 18 8 7.6764 -6.9792 -2.8181 19 6 6.4233 -6.4140 -4.7044 20 6 5.6163 -5.4662 -5.3308 21 6 5.0976 -5.7082 -6.5901 22 6 5.3615 -6.8946 -7.2418 23 6 6.1625 -7.8615 -6.6331 24 6 6.6305 -9.1923 -7.0309 25 6 7.3842 -9.6581 -6.0228 26 7 7.4353 -8.7340 -5.0141 27 1 7.9200 -8.8452 -4.1813 28 6 6.7009 -7.6273 -5.3552 29 6 7.4011 -3.2179 -1.0907 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3622 0.0007 32 1 3.5285 -3.2969 0.4087 33 1 5.6183 -2.8078 1.5906 34 1 5.9537 -1.3631 0.5416 35 1 4.9997 -1.9148 -1.9492 36 1 4.2805 -3.5832 -1.9056 37 1 6.6294 -5.0062 0.6928 38 1 5.3450 -5.4022 -0.5302 39 1 8.1578 -5.2954 -1.2014 40 1 6.1503 -4.3180 -3.1779 41 1 5.3970 -4.5344 -4.8307 42 1 4.4769 -4.9630 -7.0654 43 1 4.9485 -7.0752 -8.2232 44 1 6.4107 -9.7009 -7.9580 45 1 7.8765 -10.6193 -6.0091 46 1 7.4912 -2.5880 -1.9757 47 1 8.1579 -3.0020 -0.3365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965212009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:41 Heat of formation + Delta-G solvation = 60.758666 kcal Electronic energy + Delta-G solvation = -28455.279515 eV Core-core repulsion = 24604.146437 eV Total energy + Delta-G solvation = -3851.133078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.39178 -41.72818 -40.07784 -37.76214 -37.31934 -35.18789 -33.87354 -32.84381 -31.96710 -30.45019 -29.66342 -26.78334 -26.60975 -26.17416 -25.19070 -23.52371 -22.76879 -22.22483 -21.44171 -21.28682 -19.77943 -19.10758 -18.72074 -18.18161 -17.18813 -16.97205 -16.90848 -16.31851 -16.12737 -15.87698 -15.70084 -15.40370 -15.16402 -14.96557 -14.88260 -14.57971 -14.27337 -13.92998 -13.70889 -13.55920 -13.47756 -13.19231 -13.00601 -12.88968 -12.79027 -12.60214 -12.41483 -12.32893 -12.31405 -11.99522 -11.83210 -11.24785 -11.09747 -10.98459 -10.87245 -10.77307 -10.71536 -10.08763 -9.25858 -9.25405 -8.73331 -8.01625 -5.34407 -0.32327 0.61956 1.38452 1.42244 1.49690 1.51199 2.03419 2.08757 2.27590 2.49361 2.92493 3.28450 3.45752 3.50939 3.61747 3.65524 3.78504 3.82514 3.89538 4.00489 4.08154 4.09401 4.29110 4.30694 4.42207 4.57750 4.60780 4.64205 4.82491 4.84181 4.85776 4.90191 4.94091 4.97574 4.99428 5.00899 5.07924 5.11841 5.22070 5.31865 5.45316 5.52755 5.57768 5.66959 5.72980 5.78002 5.79512 6.13348 6.23921 6.43801 6.62334 7.09214 7.09896 7.86790 8.06347 9.20185 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.002466 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.988308 B =11352.782129 C =12594.555190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.250 1.250 7 C -0.232 4.232 8 H 0.053 0.947 9 N -0.741 5.741 10 C 0.149 3.851 11 C -0.129 4.129 12 C -0.092 4.092 13 C -0.135 4.135 14 C -0.126 4.126 15 C 0.122 3.878 16 N -0.695 5.695 17 C 0.563 3.437 18 O -0.585 6.585 19 C -0.177 4.177 20 C -0.058 4.058 21 C -0.164 4.164 22 C -0.040 4.040 23 C -0.144 4.144 24 C -0.213 4.213 25 C 0.049 3.951 26 N -0.588 5.588 27 H 0.424 0.576 28 C 0.121 3.879 29 C -0.116 4.116 30 H 0.257 0.743 31 H 0.367 0.633 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.409 0.591 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.173 0.827 45 H 0.208 0.792 46 H 0.081 0.919 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.672 -16.034 -13.939 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.363 4.363 8 H 0.071 0.929 9 N -0.383 5.383 10 C 0.040 3.960 11 C -0.167 4.167 12 C -0.093 4.093 13 C -0.176 4.176 14 C -0.164 4.164 15 C 0.017 3.983 16 N -0.346 5.346 17 C 0.354 3.646 18 O -0.467 6.467 19 C -0.183 4.183 20 C -0.078 4.078 21 C -0.183 4.183 22 C -0.058 4.058 23 C -0.149 4.149 24 C -0.237 4.237 25 C -0.077 4.077 26 N -0.190 5.190 27 H 0.263 0.737 28 C 0.010 3.990 29 C -0.154 4.154 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.247 0.753 41 H 0.161 0.839 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.190 0.810 45 H 0.225 0.775 46 H 0.099 0.901 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.025 -16.737 -13.408 30.033 hybrid contribution -0.416 1.289 0.486 1.439 sum 20.610 -15.449 -12.922 28.817 Atomic orbital electron populations 1.69897 1.07251 1.26664 1.59853 1.25559 0.96145 1.01412 1.02772 0.85364 0.78602 0.79365 0.78158 1.20247 1.22541 1.17487 1.19092 0.82952 0.93268 1.41021 0.92927 1.42740 1.02286 1.03940 1.89309 1.21851 0.90885 0.87522 0.95734 1.23194 0.95501 0.99876 0.98149 1.22179 0.94656 0.95141 0.97326 1.23405 0.95665 1.00304 0.98184 1.23190 0.98983 0.94559 0.99681 1.21869 0.96871 0.97981 0.81564 1.45553 1.52280 1.18411 1.18309 1.18412 0.79364 0.81629 0.85240 1.90631 1.41025 1.46867 1.68221 1.18965 1.08108 0.95677 0.95589 1.21350 0.93481 0.97546 0.95424 1.21175 1.03186 0.98717 0.95193 1.21120 0.93505 0.91294 0.99906 1.19678 1.03267 0.97662 0.94300 1.22082 1.05276 0.94399 1.01991 1.22608 1.01502 0.95979 0.87574 1.42145 1.43796 1.13809 1.19288 0.73697 1.18287 0.96314 0.88976 0.95448 1.23138 0.96342 0.94004 1.01894 0.93405 0.79931 0.92021 0.90998 0.89680 0.89842 0.92463 0.87586 0.92544 0.88515 0.75299 0.83925 0.82801 0.82898 0.80957 0.77540 0.90075 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.38 13.97 21.66 0.30 -63.08 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 3 Si 0.96 44.96 27.74 68.60 1.90 46.86 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 7 C -0.23 -13.18 10.45 84.04 0.88 -12.31 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 9 N -0.74 -33.74 5.20 -319.92 -1.67 -35.41 16 10 C 0.15 5.40 4.48 45.63 0.20 5.60 16 11 C -0.13 -3.50 7.59 30.89 0.23 -3.27 16 12 C -0.09 -2.12 1.02 -52.31 -0.05 -2.18 16 13 C -0.14 -3.91 6.97 30.88 0.22 -3.70 16 14 C -0.13 -2.78 7.64 30.88 0.24 -2.54 16 15 C 0.12 2.53 4.31 45.63 0.20 2.73 16 16 N -0.70 -15.05 5.21 -442.71 -2.30 -17.35 16 17 C 0.56 14.53 7.76 86.68 0.67 15.21 16 18 O -0.58 -17.69 14.76 -4.00 -0.06 -17.75 16 19 C -0.18 -4.24 5.88 -20.03 -0.12 -4.36 16 20 C -0.06 -1.14 9.52 22.56 0.21 -0.92 16 21 C -0.16 -2.76 10.00 22.21 0.22 -2.54 16 22 C -0.04 -0.67 10.09 22.51 0.23 -0.45 16 23 C -0.14 -2.96 6.37 -20.20 -0.13 -3.09 16 24 C -0.21 -3.34 11.09 23.53 0.26 -3.08 16 25 C 0.05 0.70 11.82 82.98 0.98 1.68 16 26 N -0.59 -12.02 5.87 -186.98 -1.10 -13.12 16 27 H 0.42 8.68 7.54 -92.71 -0.70 7.99 16 28 C 0.12 2.90 6.87 39.44 0.27 3.17 16 29 C -0.12 -2.07 7.59 30.88 0.23 -1.84 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.37 15.86 5.78 -92.71 -0.54 15.32 16 32 H 0.06 2.45 8.10 -2.39 -0.02 2.43 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 35 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 37 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 2.13 7.47 -2.38 -0.02 2.11 16 40 H 0.41 7.77 6.03 -92.71 -0.56 7.21 16 41 H 0.14 2.24 6.38 -2.91 -0.02 2.22 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -75.67 383.40 1.46 -74.20 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.83 Total: 41.02 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 5.22 Total: -15.38 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -4.77 Total: -128.96 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.06 Total: -17.75 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Total: -75.67 1.46 -74.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965212009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.961 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds