Wall clock time and date at job start Tue Mar 31 2020 22:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47497 * 59.99850 * 15 14 13 17 17 N 1.46500 * 109.47204 * 180.02562 * 15 14 13 18 18 C 1.34774 * 119.99914 * 274.99487 * 17 15 14 19 19 O 1.21600 * 120.00215 * 0.02562 * 18 17 15 20 20 C 1.47437 * 120.00129 * 179.97438 * 18 17 15 21 21 C 1.38747 * 120.32988 * 0.02562 * 20 18 17 22 22 C 1.38871 * 120.71839 * 179.97438 * 21 20 18 23 23 C 1.36347 * 121.06613 * 0.02562 * 22 21 20 24 24 C 1.40445 * 120.08370 * 0.02562 * 23 22 21 25 25 C 1.40794 * 121.26979 * 179.97438 * 24 23 22 26 26 C 1.36632 * 118.15562 * 179.97438 * 25 24 23 27 27 C 1.39232 * 119.90818 * 0.02562 * 26 25 24 28 28 N 1.31227 * 121.69526 * 359.97438 * 27 26 25 29 29 C 1.33346 * 121.35324 * 359.74664 * 28 27 26 30 30 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 31 31 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 34 34 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 35 35 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 37 37 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 38 38 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 39 39 H 0.96995 * 120.00272 * 95.00347 * 17 15 14 40 40 H 1.08000 * 119.63767 * 359.97438 * 21 20 18 41 41 H 1.08006 * 119.46486 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.96045 * 180.02562 * 23 22 21 43 43 H 1.08004 * 120.92220 * 0.02562 * 25 24 23 44 44 H 1.07997 * 120.04628 * 180.02562 * 26 25 24 45 45 H 1.08001 * 119.14954 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47075 * 299.99543 * 30 10 9 47 47 H 1.08996 * 109.47407 * 60.00500 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 6 1.9469 -6.0771 -0.6104 16 1 2.8576 -5.9704 -1.1998 17 7 1.1070 -7.1259 -1.1942 18 6 1.6766 -8.2080 -1.7608 19 8 2.8877 -8.3140 -1.7871 20 6 0.8314 -9.2638 -2.3478 21 6 -0.5512 -9.1502 -2.3212 22 6 -1.3550 -10.1395 -2.8721 23 6 -0.8102 -11.2467 -3.4522 24 6 0.5847 -11.4023 -3.4999 25 6 1.1738 -12.5356 -4.0922 26 6 2.5374 -12.6217 -4.1040 27 6 3.3021 -11.6044 -3.5391 28 7 2.7480 -10.5502 -2.9881 29 6 1.4232 -10.4032 -2.9491 30 6 1.1808 -4.7521 -0.6103 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 3.0467 -3.2553 1.8709 34 1 1.5111 -4.1418 2.0259 35 1 3.4462 -5.6305 2.4602 36 1 4.0981 -5.2536 0.8472 37 1 1.4000 -6.5626 1.4159 38 1 2.8559 -7.3998 0.8270 39 1 0.1409 -7.0416 -1.1730 40 1 -1.0071 -8.2829 -1.8670 41 1 -2.4291 -10.0302 -2.8406 42 1 -1.4522 -12.0049 -3.8756 43 1 0.5648 -13.3149 -4.5261 44 1 3.0214 -13.4775 -4.5508 45 1 4.3790 -11.6848 -3.5555 46 1 0.2701 -4.8584 -0.0208 47 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981205862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:25 Heat of formation + Delta-G solvation = 26.257020 kcal Electronic energy + Delta-G solvation = -28362.638509 eV Core-core repulsion = 24510.009327 eV Total energy + Delta-G solvation = -3852.629182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26398 -39.65050 -37.87882 -37.17944 -34.59763 -33.75509 -33.26390 -31.12359 -30.91910 -30.70023 -28.97599 -27.69377 -24.97362 -23.93216 -23.75602 -23.49366 -21.89611 -21.15251 -20.27486 -19.42042 -18.54904 -18.02222 -17.18768 -16.97305 -16.22411 -15.95574 -15.14614 -15.08535 -14.80095 -14.39847 -14.28892 -14.25976 -14.07238 -13.67784 -13.50637 -13.36113 -13.26463 -13.06630 -12.63191 -12.46323 -12.13205 -12.06708 -11.97209 -11.72794 -10.96610 -10.89221 -10.85150 -10.78785 -10.67117 -10.30144 -10.25048 -10.13262 -10.10249 -9.76301 -9.60281 -9.26993 -9.16644 -8.90405 -8.82200 -8.58610 -6.93532 -5.74488 -3.02800 -0.17839 0.46656 1.44174 2.44290 3.15147 3.17060 3.46273 3.50521 3.51494 3.90001 3.96882 4.19628 4.35247 4.44531 4.53459 4.60574 4.63884 4.74295 4.91941 5.01900 5.10395 5.16564 5.30397 5.39289 5.50702 5.54559 5.55311 5.65403 5.67594 5.74181 5.80366 5.81612 5.93395 5.95605 6.03011 6.08626 6.10777 6.20310 6.36917 6.40601 6.42062 6.57674 6.60901 6.70982 6.78320 7.01304 7.16850 7.59216 7.73039 7.76077 8.37201 8.44477 9.55483 10.13091 10.47977 11.48260 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.002155 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.372225 B =12991.731716 C =13497.609245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.049 0.951 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.152 3.848 16 H 0.088 0.912 17 N -0.724 5.724 18 C 0.551 3.449 19 O -0.499 6.499 20 C -0.105 4.105 21 C -0.063 4.063 22 C -0.125 4.125 23 C -0.074 4.074 24 C -0.112 4.112 25 C -0.060 4.060 26 C -0.175 4.175 27 C 0.131 3.869 28 N -0.436 5.436 29 C 0.161 3.839 30 C -0.129 4.129 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.395 0.605 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.160 0.840 46 H 0.064 0.936 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -28.941 -6.846 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.047 3.953 16 H 0.106 0.894 17 N -0.376 5.376 18 C 0.336 3.664 19 O -0.373 6.373 20 C -0.109 4.109 21 C -0.084 4.084 22 C -0.143 4.143 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.086 4.086 26 C -0.195 4.195 27 C -0.042 4.042 28 N -0.143 5.143 29 C 0.038 3.962 30 C -0.168 4.168 31 H 0.065 0.935 32 H 0.216 0.784 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.229 0.771 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.177 0.823 46 H 0.082 0.918 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.872 -28.097 -6.473 28.846 hybrid contribution -0.990 0.249 -0.333 1.073 sum -1.862 -27.848 -6.806 28.728 Atomic orbital electron populations 1.69646 1.05087 1.25693 1.57901 1.24730 0.95518 0.97653 1.03157 0.86277 0.78521 0.83601 0.77868 1.21281 1.21757 1.21292 1.19206 0.90999 0.84085 1.42432 0.91203 1.42396 1.05725 0.99717 1.88626 1.20100 0.94127 0.85499 0.92985 0.93340 1.22284 0.99685 0.95262 1.00435 1.21486 0.98561 0.95351 0.99909 1.21879 1.00047 0.98859 0.95434 1.21018 0.94470 0.85860 0.93916 0.89374 1.46111 1.10260 1.21307 1.59944 1.17903 0.87982 0.81655 0.78824 1.90851 1.13301 1.77054 1.56046 1.20017 0.93358 0.95373 1.02144 1.21512 0.92156 0.98685 0.96034 1.20863 1.00631 0.93981 0.98779 1.21166 0.93122 0.97837 0.97135 1.18846 0.94751 0.96197 1.01617 1.21458 0.95353 0.96048 0.95709 1.21976 0.94774 1.01002 1.01786 1.23211 1.01085 0.88472 0.91388 1.68343 1.10510 1.21643 1.13784 1.18632 0.89350 0.92765 0.95446 1.22100 0.99312 0.93413 1.01958 0.93536 0.78359 0.91937 0.92695 0.92570 0.92153 0.92164 0.92139 0.77070 0.84572 0.84667 0.84858 0.84275 0.84432 0.82258 0.91764 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.00 5.12 -53.42 -0.27 -18.28 16 10 C 0.18 3.62 2.77 -67.93 -0.19 3.44 16 11 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 12 C -0.14 -2.45 5.50 -26.73 -0.15 -2.60 16 13 C -0.11 -1.72 5.92 -26.73 -0.16 -1.87 16 14 C -0.12 -1.77 5.49 -26.73 -0.15 -1.92 16 15 C 0.15 2.24 2.46 -67.90 -0.17 2.08 16 16 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 17 N -0.72 -9.34 5.03 -54.85 -0.28 -9.61 16 18 C 0.55 8.18 7.73 -12.52 -0.10 8.08 16 19 O -0.50 -9.25 14.85 5.28 0.08 -9.17 16 20 C -0.11 -1.31 5.91 -104.61 -0.62 -1.93 16 21 C -0.06 -0.56 9.52 -39.16 -0.37 -0.93 16 22 C -0.12 -0.86 9.93 -40.03 -0.40 -1.26 16 23 C -0.07 -0.52 9.75 -39.43 -0.38 -0.90 16 24 C -0.11 -1.06 5.74 -106.82 -0.61 -1.67 16 25 C -0.06 -0.42 9.89 -39.20 -0.39 -0.81 16 26 C -0.18 -1.24 10.03 -39.79 -0.40 -1.64 16 27 C 0.13 1.29 11.15 -17.44 -0.19 1.10 16 28 N -0.44 -6.10 8.44 -10.76 -0.09 -6.19 16 29 C 0.16 2.07 6.61 -84.58 -0.56 1.51 16 30 C -0.13 -2.09 4.86 -26.70 -0.13 -2.22 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.39 3.97 6.62 -40.82 -0.27 3.70 16 40 H 0.14 0.87 6.37 -52.49 -0.33 0.54 16 41 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -35.41 384.07 -11.06 -46.47 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.78 Total: 9.67 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -5.21 Total: -8.76 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.08 Total: -61.52 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.41 -11.06 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981205862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.724 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds