Wall clock time and date at job start Tue Mar 31 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47497 * 59.99850 * 15 14 13 17 17 N 1.46500 * 109.47204 * 180.02562 * 15 14 13 18 18 C 1.34774 * 119.99914 * 274.99487 * 17 15 14 19 19 O 1.21600 * 120.00215 * 0.02562 * 18 17 15 20 20 C 1.47437 * 120.00129 * 179.97438 * 18 17 15 21 21 C 1.38747 * 120.32988 * 0.02562 * 20 18 17 22 22 C 1.38871 * 120.71839 * 179.97438 * 21 20 18 23 23 C 1.36347 * 121.06613 * 0.02562 * 22 21 20 24 24 C 1.40445 * 120.08370 * 0.02562 * 23 22 21 25 25 C 1.40794 * 121.26979 * 179.97438 * 24 23 22 26 26 C 1.36632 * 118.15562 * 179.97438 * 25 24 23 27 27 C 1.39232 * 119.90818 * 0.02562 * 26 25 24 28 28 N 1.31227 * 121.69526 * 359.97438 * 27 26 25 29 29 C 1.33346 * 121.35324 * 359.74664 * 28 27 26 30 30 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 31 31 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 34 34 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 35 35 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 37 37 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 38 38 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 39 39 H 0.96995 * 120.00272 * 95.00347 * 17 15 14 40 40 H 1.08000 * 119.63767 * 359.97438 * 21 20 18 41 41 H 1.08006 * 119.46486 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.96045 * 180.02562 * 23 22 21 43 43 H 1.08004 * 120.92220 * 0.02562 * 25 24 23 44 44 H 1.07997 * 120.04628 * 180.02562 * 26 25 24 45 45 H 1.08001 * 119.14954 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47075 * 299.99543 * 30 10 9 47 47 H 1.08996 * 109.47407 * 60.00500 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 6 1.9469 -6.0771 -0.6104 16 1 2.8576 -5.9704 -1.1998 17 7 1.1070 -7.1259 -1.1942 18 6 1.6766 -8.2080 -1.7608 19 8 2.8877 -8.3140 -1.7871 20 6 0.8314 -9.2638 -2.3478 21 6 -0.5512 -9.1502 -2.3212 22 6 -1.3550 -10.1395 -2.8721 23 6 -0.8102 -11.2467 -3.4522 24 6 0.5847 -11.4023 -3.4999 25 6 1.1738 -12.5356 -4.0922 26 6 2.5374 -12.6217 -4.1040 27 6 3.3021 -11.6044 -3.5391 28 7 2.7480 -10.5502 -2.9881 29 6 1.4232 -10.4032 -2.9491 30 6 1.1808 -4.7521 -0.6103 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 3.0467 -3.2553 1.8709 34 1 1.5111 -4.1418 2.0259 35 1 3.4462 -5.6305 2.4602 36 1 4.0981 -5.2536 0.8472 37 1 1.4000 -6.5626 1.4159 38 1 2.8559 -7.3998 0.8270 39 1 0.1409 -7.0416 -1.1730 40 1 -1.0071 -8.2829 -1.8670 41 1 -2.4291 -10.0302 -2.8406 42 1 -1.4522 -12.0049 -3.8756 43 1 0.5648 -13.3149 -4.5261 44 1 3.0214 -13.4775 -4.5508 45 1 4.3790 -11.6848 -3.5555 46 1 0.2701 -4.8584 -0.0208 47 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981205862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:24 Heat of formation + Delta-G solvation = 3.194368 kcal Electronic energy + Delta-G solvation = -28363.638580 eV Core-core repulsion = 24510.009327 eV Total energy + Delta-G solvation = -3853.629253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.98115 -40.76223 -39.18086 -37.89144 -36.21496 -34.84888 -34.36539 -32.95111 -31.68809 -31.42716 -30.26139 -29.28275 -25.79245 -25.58766 -24.60622 -24.36705 -23.21373 -22.43621 -21.40533 -20.79143 -19.32251 -19.15952 -18.65200 -17.86928 -17.19653 -17.03715 -16.40153 -16.16273 -15.87799 -15.67091 -15.41453 -15.24371 -15.16217 -14.96659 -14.85251 -14.73034 -14.23110 -14.01229 -13.85137 -13.56548 -13.40530 -13.05326 -12.91050 -12.79979 -12.71310 -12.32028 -12.27039 -12.16195 -12.05926 -11.97309 -11.65404 -11.50081 -11.46935 -11.38831 -10.97081 -10.86079 -10.11572 -10.04768 -9.79534 -9.26912 -8.99822 -7.93541 -5.21328 -0.82267 -0.15780 0.77049 1.47039 1.49548 1.55474 1.79583 2.09898 2.25206 2.56924 3.17821 3.34884 3.39275 3.54092 3.63482 3.77452 3.85715 3.87245 3.97502 4.02738 4.06322 4.19798 4.24652 4.30268 4.40024 4.45950 4.51064 4.54273 4.56807 4.65688 4.71444 4.75519 4.92985 4.98204 5.01915 5.09806 5.13223 5.16554 5.20422 5.22409 5.34653 5.37739 5.47932 5.49867 5.53405 5.57639 5.65631 5.85097 6.29124 6.59034 7.08252 7.31990 7.35433 8.10667 8.35377 9.29562 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.002155 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.372225 B =12991.731716 C =13497.609245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.033 0.967 12 C -0.125 4.125 13 C -0.106 4.106 14 C -0.115 4.115 15 C 0.162 3.838 16 H 0.063 0.937 17 N -0.713 5.713 18 C 0.549 3.451 19 O -0.549 6.549 20 C -0.153 4.153 21 C -0.047 4.047 22 C -0.131 4.131 23 C -0.056 4.056 24 C -0.131 4.131 25 C -0.050 4.050 26 C -0.177 4.177 27 C 0.117 3.883 28 N -0.499 5.499 29 C 0.131 3.869 30 C -0.113 4.113 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.410 0.590 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.175 0.825 43 H 0.182 0.818 44 H 0.174 0.826 45 H 0.170 0.830 46 H 0.079 0.921 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 -31.604 -7.474 32.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.798 3.202 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.069 3.931 11 H 0.051 0.949 12 C -0.165 4.165 13 C -0.145 4.145 14 C -0.153 4.153 15 C 0.057 3.943 16 H 0.081 0.919 17 N -0.366 5.366 18 C 0.337 3.663 19 O -0.426 6.426 20 C -0.157 4.157 21 C -0.067 4.067 22 C -0.149 4.149 23 C -0.074 4.074 24 C -0.134 4.134 25 C -0.076 4.076 26 C -0.196 4.196 27 C -0.054 4.054 28 N -0.207 5.207 29 C 0.008 3.992 30 C -0.152 4.152 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.247 0.753 40 H 0.173 0.827 41 H 0.190 0.810 42 H 0.192 0.808 43 H 0.199 0.801 44 H 0.191 0.809 45 H 0.187 0.813 46 H 0.097 0.903 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.716 -30.797 -7.099 31.721 hybrid contribution -0.424 0.931 -0.204 1.043 sum -3.140 -29.866 -7.303 30.906 Atomic orbital electron populations 1.69790 1.06384 1.26025 1.59627 1.25496 0.96404 1.00829 1.03967 0.85276 0.77269 0.79560 0.78071 1.20688 1.22028 1.20534 1.19537 0.91271 0.85336 1.40889 0.91135 1.42548 1.05449 1.00703 1.88738 1.20291 0.93783 0.84798 0.94276 0.94852 1.22083 0.99700 0.96213 0.98521 1.21411 0.98020 0.93831 1.01195 1.21792 1.00460 0.98112 0.94945 1.20721 0.93619 0.85809 0.94194 0.91892 1.45907 1.10828 1.20405 1.59458 1.18404 0.87793 0.82103 0.78024 1.90807 1.15486 1.78205 1.58137 1.19935 0.94565 0.95599 1.05559 1.21845 0.90786 0.99616 0.94451 1.21292 1.02185 0.93272 0.98139 1.21687 0.92315 0.98354 0.95078 1.19195 0.95835 0.96335 1.02000 1.21986 0.95722 0.95828 0.94068 1.22294 0.95065 1.01073 1.01182 1.23625 1.02155 0.88590 0.91037 1.68256 1.11974 1.24008 1.16469 1.18972 0.89631 0.94002 0.96588 1.21876 0.99177 0.92764 1.01352 0.94040 0.79345 0.93921 0.92531 0.90539 0.92614 0.90572 0.92661 0.75279 0.82663 0.81038 0.80787 0.80089 0.80881 0.81286 0.90272 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.18 13.06 21.65 0.28 -58.89 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.84 29.55 68.60 2.03 48.86 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.24 -13.44 9.93 84.03 0.83 -12.60 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.73 -37.21 5.12 -322.94 -1.65 -38.87 16 10 C 0.18 7.15 2.77 44.99 0.12 7.27 16 11 H 0.03 1.44 8.08 -2.39 -0.02 1.42 16 12 C -0.13 -4.50 5.50 30.59 0.17 -4.34 16 13 C -0.11 -3.14 5.92 30.60 0.18 -2.95 16 14 C -0.11 -3.23 5.49 30.59 0.17 -3.06 16 15 C 0.16 4.88 2.46 45.01 0.11 4.99 16 16 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 17 N -0.71 -18.62 5.03 -445.71 -2.24 -20.86 16 18 C 0.55 17.13 7.73 86.67 0.67 17.80 16 19 O -0.55 -21.95 14.85 -4.03 -0.06 -22.01 16 20 C -0.15 -3.88 5.91 -19.86 -0.12 -4.00 16 21 C -0.05 -0.74 9.52 22.54 0.21 -0.53 16 22 C -0.13 -1.34 9.93 21.98 0.22 -1.12 16 23 C -0.06 -0.57 9.75 22.37 0.22 -0.35 16 24 C -0.13 -2.24 5.74 -21.29 -0.12 -2.36 16 25 C -0.05 -0.56 9.89 22.52 0.22 -0.34 16 26 C -0.18 -2.17 10.03 22.13 0.22 -1.95 16 27 C 0.12 2.40 11.15 85.02 0.95 3.35 16 28 N -0.50 -14.87 8.44 -187.96 -1.59 -16.46 16 29 C 0.13 3.44 6.61 40.61 0.27 3.70 16 30 C -0.11 -3.68 4.86 30.61 0.15 -3.53 16 31 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 7.92 6.62 -92.71 -0.61 7.30 16 40 H 0.16 1.65 6.37 -2.91 -0.02 1.63 16 41 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 42 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 44 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 45 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 46 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -82.15 384.07 1.38 -80.77 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.34 Total: 31.33 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.95 Total: -3.87 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -5.20 Total: -135.07 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.06 Total: -22.01 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -82.15 1.38 -80.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981205862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.963 kcal (2) G-P(sol) polarization free energy of solvation -82.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds