Wall clock time and date at job start Tue Mar 31 2020 23:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00214 * 2 1 4 4 H 1.48500 * 109.47100 * 270.00272 * 3 2 1 5 5 H 1.48498 * 109.46859 * 30.00051 * 3 2 1 6 6 H 1.48507 * 109.47272 * 150.00130 * 3 2 1 7 7 C 1.38814 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99781 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00431 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00237 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46944 * 35.00339 * 10 9 7 12 12 C 1.52998 * 109.47266 * 275.00498 * 10 9 7 13 13 C 1.53001 * 109.47076 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47073 * 59.99968 * 13 12 10 15 15 C 1.52998 * 109.47396 * 299.99624 * 14 13 12 16 16 H 1.09002 * 109.47250 * 300.01030 * 15 14 13 17 17 N 1.46493 * 109.47854 * 180.02562 * 15 14 13 18 18 C 1.34775 * 119.99932 * 84.99792 * 17 15 14 19 19 O 1.21540 * 120.00251 * 0.02562 * 18 17 15 20 20 C 1.47951 * 119.99914 * 180.02562 * 18 17 15 21 21 N 1.32200 * 120.15778 * 354.38470 * 20 18 17 22 22 C 1.32025 * 122.68192 * 180.02562 * 21 20 18 23 23 C 1.36692 * 122.02500 * 0.02562 * 22 21 20 24 24 C 1.40524 * 118.84759 * 359.97438 * 23 22 21 25 25 C 1.40332 * 122.21390 * 180.02562 * 24 23 22 26 26 C 1.36201 * 119.45330 * 179.97438 * 25 24 23 27 27 C 1.39388 * 120.99773 * 0.02562 * 26 25 24 28 28 C 1.36256 * 121.08607 * 359.73683 * 27 26 25 29 29 C 1.40093 * 119.53538 * 0.51029 * 28 27 26 30 30 C 1.53001 * 109.47104 * 154.99951 * 10 9 7 31 31 H 0.97002 * 120.00363 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99415 * 0.02562 * 9 7 2 33 33 H 1.09007 * 109.47009 * 299.99801 * 12 10 9 34 34 H 1.09001 * 109.47483 * 59.99627 * 12 10 9 35 35 H 1.09003 * 109.46985 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.46839 * 299.99252 * 13 12 10 37 37 H 1.09004 * 109.47189 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.47503 * 59.99608 * 14 13 12 39 39 H 0.96995 * 120.00185 * 265.00406 * 17 15 14 40 40 H 1.07992 * 118.98878 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.57087 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.27213 * 359.96557 * 25 24 23 43 43 H 1.07992 * 119.50187 * 180.02562 * 26 25 24 44 44 H 1.07999 * 119.45735 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.23486 * 180.26645 * 28 27 26 46 46 H 1.09007 * 109.46904 * 60.00363 * 30 10 9 47 47 H 1.08994 * 109.47563 * 300.00318 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9687 -3.5506 0.5890 12 6 2.4219 -4.0356 -1.4375 13 6 3.1864 -5.3610 -1.4375 14 6 2.3086 -6.4560 -0.8282 15 6 1.9446 -6.0773 0.6088 16 1 2.8553 -5.9714 1.1984 17 7 1.1047 -7.1260 1.1925 18 6 1.6742 -8.2082 1.7590 19 8 2.8847 -8.3138 1.7861 20 6 0.8258 -9.2675 2.3481 21 7 -0.4842 -9.1058 2.4203 22 6 -1.2878 -10.0176 2.9361 23 6 -0.8169 -11.2000 3.4349 24 6 0.5654 -11.4499 3.3957 25 6 1.1248 -12.6393 3.8872 26 6 2.4727 -12.8231 3.8204 27 6 3.3039 -11.8478 3.2719 28 6 2.7938 -10.6836 2.7811 29 6 1.4124 -10.4568 2.8376 30 6 1.1807 -4.7522 0.6091 31 1 -0.4851 0.8400 0.0004 32 1 0.3554 -2.3881 -0.0005 33 1 1.5112 -4.1419 -2.0270 34 1 3.0469 -3.2553 -1.8718 35 1 3.4453 -5.6311 -2.4613 36 1 4.0970 -5.2551 -0.8480 37 1 2.8530 -7.4003 -0.8286 38 1 1.3979 -6.5618 -1.4178 39 1 0.1386 -7.0416 1.1712 40 1 -2.3496 -9.8230 2.9656 41 1 -1.4955 -11.9293 3.8520 42 1 0.4918 -13.4025 4.3151 43 1 2.9040 -13.7383 4.1981 44 1 4.3694 -12.0194 3.2318 45 1 3.4500 -9.9391 2.3553 46 1 0.2700 -4.8584 0.0196 47 1 0.9214 -4.4824 1.6328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981298163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:16 Heat of formation + Delta-G solvation = 22.905687 kcal Electronic energy + Delta-G solvation = -28375.264303 eV Core-core repulsion = 24522.489797 eV Total energy + Delta-G solvation = -3852.774506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.42158 -39.70091 -37.93874 -37.68233 -34.74284 -33.45197 -33.16938 -31.49359 -31.11461 -30.31070 -29.11301 -27.76133 -25.34847 -23.86628 -23.73040 -23.21049 -21.93879 -21.44549 -20.46245 -19.54009 -18.41858 -17.76309 -17.45047 -16.94943 -16.30275 -16.01030 -15.43652 -15.28979 -14.86550 -14.44260 -14.37751 -14.14539 -14.05839 -13.72317 -13.59779 -13.48099 -13.24481 -13.07537 -12.66209 -12.46194 -12.17690 -12.10765 -12.05226 -11.78296 -10.98387 -10.93225 -10.85863 -10.70359 -10.50464 -10.33974 -10.28858 -10.20878 -10.13783 -9.89861 -9.65906 -9.49422 -9.46268 -9.02798 -8.84828 -8.40531 -6.94121 -5.74829 -3.03354 -0.25527 0.54512 1.41212 2.41832 2.94288 2.98739 3.45094 3.50446 3.51906 3.79833 3.87733 4.21554 4.40131 4.43686 4.54223 4.59815 4.78025 4.85680 4.97674 4.99576 5.08107 5.12115 5.33008 5.37577 5.47409 5.52240 5.62431 5.68340 5.70660 5.73190 5.79135 5.89486 5.99217 6.01976 6.04157 6.14651 6.16356 6.23555 6.34082 6.36874 6.50708 6.54656 6.58301 6.65816 6.75157 6.98926 7.14744 7.29711 7.58810 7.72693 8.10268 8.43879 9.55003 10.12612 10.47345 11.47906 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.002156 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.821074 B =12983.824874 C =13567.006933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.146 3.854 16 H 0.091 0.909 17 N -0.696 5.696 18 C 0.572 3.428 19 O -0.531 6.531 20 C 0.126 3.874 21 N -0.456 5.456 22 C 0.074 3.926 23 C -0.133 4.133 24 C -0.031 4.031 25 C -0.121 4.121 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.090 4.090 29 C -0.072 4.072 30 C -0.130 4.130 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.411 0.589 40 H 0.161 0.839 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.174 0.826 46 H 0.066 0.934 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 -28.752 6.119 29.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.074 3.926 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.042 3.958 16 H 0.109 0.891 17 N -0.345 5.345 18 C 0.357 3.643 19 O -0.408 6.408 20 C -0.026 4.026 21 N -0.167 5.167 22 C -0.072 4.072 23 C -0.153 4.153 24 C -0.036 4.036 25 C -0.139 4.139 26 C -0.113 4.113 27 C -0.142 4.142 28 C -0.108 4.108 29 C -0.075 4.075 30 C -0.169 4.169 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.179 0.821 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.191 0.809 46 H 0.084 0.916 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.961 -27.882 5.862 28.508 hybrid contribution -0.240 0.065 0.343 0.423 sum 0.721 -27.818 6.205 28.511 Atomic orbital electron populations 1.69658 1.05090 1.25600 1.57857 1.24739 0.95518 0.97672 1.03144 0.86203 0.78675 0.83925 0.77487 1.21770 1.21836 1.20761 1.19243 0.91009 0.84059 1.42423 0.91146 1.42404 1.05772 0.99697 1.88587 1.20093 0.94084 0.85514 0.92959 0.93328 1.22299 0.99750 0.95226 1.00494 1.21481 0.98487 0.95331 0.99953 1.21889 1.00239 0.98884 0.95259 1.21136 0.94497 0.86032 0.94113 0.89137 1.46053 1.11543 1.19984 1.56969 1.17728 0.86831 0.81545 0.78180 1.90582 1.13555 1.77414 1.59262 1.21448 0.90306 0.93492 0.97353 1.67281 1.04033 1.32071 1.13323 1.22212 0.99852 0.89637 0.95457 1.22155 0.94653 0.98879 0.99590 1.18210 0.93398 0.94511 0.97528 1.20927 0.95661 0.96278 1.01007 1.21089 0.93694 0.99130 0.97360 1.21141 1.00514 0.93895 0.98653 1.22213 0.94373 0.98179 0.96074 1.18705 0.95158 0.93941 0.99693 1.22089 0.99414 0.93139 1.02216 0.93563 0.78306 0.92632 0.91869 0.92472 0.92117 0.92107 0.91940 0.75323 0.82133 0.83982 0.85012 0.85523 0.85340 0.80902 0.91561 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.92 5.12 -53.42 -0.27 -18.19 16 10 C 0.18 3.58 2.77 -67.93 -0.19 3.39 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 13 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 14 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 15 C 0.15 2.08 2.45 -67.96 -0.17 1.92 16 16 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 17 N -0.70 -9.13 5.07 -54.74 -0.28 -9.41 16 18 C 0.57 7.95 7.74 -12.28 -0.10 7.85 16 19 O -0.53 -8.20 13.10 5.33 0.07 -8.13 16 20 C 0.13 1.60 6.81 -82.55 -0.56 1.03 16 21 N -0.46 -5.27 9.52 -9.81 -0.09 -5.36 16 22 C 0.07 0.66 11.06 -18.03 -0.20 0.46 16 23 C -0.13 -1.04 9.88 -39.28 -0.39 -1.42 16 24 C -0.03 -0.30 5.75 -106.83 -0.61 -0.91 16 25 C -0.12 -0.90 9.82 -39.53 -0.39 -1.29 16 26 C -0.09 -0.67 9.95 -39.89 -0.40 -1.07 16 27 C -0.12 -1.07 9.95 -39.87 -0.40 -1.47 16 28 C -0.09 -1.00 9.23 -39.60 -0.37 -1.37 16 29 C -0.07 -0.85 5.76 -106.59 -0.61 -1.46 16 30 C -0.13 -2.09 4.86 -26.75 -0.13 -2.22 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.41 4.95 7.97 -40.82 -0.33 4.62 16 40 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.17 2.16 4.97 -52.50 -0.26 1.90 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -32.05 383.08 -11.06 -43.11 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -6.76 Total: 12.14 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -5.20 Total: -9.93 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.08 Total: -60.39 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.07 Total: -8.13 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.05 -11.06 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981298163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.016 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds