Wall clock time and date at job start Tue Mar 31 2020 23:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00214 * 2 1 4 4 H 1.48500 * 109.47100 * 270.00272 * 3 2 1 5 5 H 1.48498 * 109.46859 * 30.00051 * 3 2 1 6 6 H 1.48507 * 109.47272 * 150.00130 * 3 2 1 7 7 C 1.38814 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99781 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00431 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00237 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46944 * 35.00339 * 10 9 7 12 12 C 1.52998 * 109.47266 * 275.00498 * 10 9 7 13 13 C 1.53001 * 109.47076 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47073 * 59.99968 * 13 12 10 15 15 C 1.52998 * 109.47396 * 299.99624 * 14 13 12 16 16 H 1.09002 * 109.47250 * 300.01030 * 15 14 13 17 17 N 1.46493 * 109.47854 * 180.02562 * 15 14 13 18 18 C 1.34775 * 119.99932 * 84.99792 * 17 15 14 19 19 O 1.21540 * 120.00251 * 0.02562 * 18 17 15 20 20 C 1.47951 * 119.99914 * 180.02562 * 18 17 15 21 21 N 1.32200 * 120.15778 * 354.38470 * 20 18 17 22 22 C 1.32025 * 122.68192 * 180.02562 * 21 20 18 23 23 C 1.36692 * 122.02500 * 0.02562 * 22 21 20 24 24 C 1.40524 * 118.84759 * 359.97438 * 23 22 21 25 25 C 1.40332 * 122.21390 * 180.02562 * 24 23 22 26 26 C 1.36201 * 119.45330 * 179.97438 * 25 24 23 27 27 C 1.39388 * 120.99773 * 0.02562 * 26 25 24 28 28 C 1.36256 * 121.08607 * 359.73683 * 27 26 25 29 29 C 1.40093 * 119.53538 * 0.51029 * 28 27 26 30 30 C 1.53001 * 109.47104 * 154.99951 * 10 9 7 31 31 H 0.97002 * 120.00363 * 359.97438 * 1 2 3 32 32 H 0.97003 * 119.99415 * 0.02562 * 9 7 2 33 33 H 1.09007 * 109.47009 * 299.99801 * 12 10 9 34 34 H 1.09001 * 109.47483 * 59.99627 * 12 10 9 35 35 H 1.09003 * 109.46985 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.46839 * 299.99252 * 13 12 10 37 37 H 1.09004 * 109.47189 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.47503 * 59.99608 * 14 13 12 39 39 H 0.96995 * 120.00185 * 265.00406 * 17 15 14 40 40 H 1.07992 * 118.98878 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.57087 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.27213 * 359.96557 * 25 24 23 43 43 H 1.07992 * 119.50187 * 180.02562 * 26 25 24 44 44 H 1.07999 * 119.45735 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.23486 * 180.26645 * 28 27 26 46 46 H 1.09007 * 109.46904 * 60.00363 * 30 10 9 47 47 H 1.08994 * 109.47563 * 300.00318 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9687 -3.5506 0.5890 12 6 2.4219 -4.0356 -1.4375 13 6 3.1864 -5.3610 -1.4375 14 6 2.3086 -6.4560 -0.8282 15 6 1.9446 -6.0773 0.6088 16 1 2.8553 -5.9714 1.1984 17 7 1.1047 -7.1260 1.1925 18 6 1.6742 -8.2082 1.7590 19 8 2.8847 -8.3138 1.7861 20 6 0.8258 -9.2675 2.3481 21 7 -0.4842 -9.1058 2.4203 22 6 -1.2878 -10.0176 2.9361 23 6 -0.8169 -11.2000 3.4349 24 6 0.5654 -11.4499 3.3957 25 6 1.1248 -12.6393 3.8872 26 6 2.4727 -12.8231 3.8204 27 6 3.3039 -11.8478 3.2719 28 6 2.7938 -10.6836 2.7811 29 6 1.4124 -10.4568 2.8376 30 6 1.1807 -4.7522 0.6091 31 1 -0.4851 0.8400 0.0004 32 1 0.3554 -2.3881 -0.0005 33 1 1.5112 -4.1419 -2.0270 34 1 3.0469 -3.2553 -1.8718 35 1 3.4453 -5.6311 -2.4613 36 1 4.0970 -5.2551 -0.8480 37 1 2.8530 -7.4003 -0.8286 38 1 1.3979 -6.5618 -1.4178 39 1 0.1386 -7.0416 1.1712 40 1 -2.3496 -9.8230 2.9656 41 1 -1.4955 -11.9293 3.8520 42 1 0.4918 -13.4025 4.3151 43 1 2.9040 -13.7383 4.1981 44 1 4.3694 -12.0194 3.2318 45 1 3.4500 -9.9391 2.3553 46 1 0.2700 -4.8584 0.0196 47 1 0.9214 -4.4824 1.6328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981298163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:15 Heat of formation + Delta-G solvation = 3.340808 kcal Electronic energy + Delta-G solvation = -28376.112700 eV Core-core repulsion = 24522.489797 eV Total energy + Delta-G solvation = -3853.622903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19421 -40.76232 -39.23306 -38.36980 -36.29470 -34.88086 -33.98240 -32.93477 -32.17114 -31.21863 -30.26691 -29.35565 -26.19280 -25.67553 -24.52427 -24.05720 -23.18557 -22.62967 -21.62333 -20.90657 -19.45644 -18.96288 -18.45153 -18.11983 -17.41789 -16.77460 -16.59550 -16.41081 -16.12548 -15.61248 -15.52668 -15.25683 -15.19977 -15.01075 -14.74986 -14.67729 -14.42409 -14.10327 -13.87312 -13.59810 -13.40342 -13.14594 -12.91657 -12.80705 -12.73872 -12.49716 -12.27987 -12.15780 -12.04298 -11.97926 -11.66287 -11.44706 -11.36791 -11.20035 -11.04144 -10.87201 -10.47524 -10.16995 -10.11738 -9.07111 -8.99822 -7.93265 -5.21326 -0.98366 -0.12457 0.69517 1.47342 1.48663 1.57013 1.60284 1.93216 2.20492 2.56853 3.04376 3.08789 3.39864 3.59491 3.61306 3.68462 3.81151 3.84770 3.90345 4.03223 4.17948 4.25315 4.28751 4.29955 4.37152 4.43855 4.49848 4.52777 4.56598 4.65367 4.73490 4.75371 4.83302 4.99325 5.06571 5.10425 5.14626 5.16506 5.21818 5.34594 5.39998 5.41201 5.50200 5.52403 5.55143 5.63506 5.66032 5.90807 6.28937 6.34566 6.75134 7.07866 7.35246 8.10943 8.34730 9.30216 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.002156 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.821074 B =12983.824874 C =13567.006933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.236 4.236 8 H 0.074 0.926 9 N -0.736 5.736 10 C 0.178 3.822 11 H 0.039 0.961 12 C -0.127 4.127 13 C -0.104 4.104 14 C -0.116 4.116 15 C 0.157 3.843 16 H 0.077 0.923 17 N -0.693 5.693 18 C 0.570 3.430 19 O -0.554 6.554 20 C 0.090 3.910 21 N -0.466 5.466 22 C 0.053 3.947 23 C -0.107 4.107 24 C -0.054 4.054 25 C -0.110 4.110 26 C -0.100 4.100 27 C -0.114 4.114 28 C -0.128 4.128 29 C -0.087 4.087 30 C -0.115 4.115 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.416 0.584 40 H 0.190 0.810 41 H 0.185 0.815 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.072 0.928 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -31.959 6.938 32.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.368 4.368 8 H 0.092 0.908 9 N -0.376 5.376 10 C 0.070 3.930 11 H 0.057 0.943 12 C -0.167 4.167 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.052 3.948 16 H 0.095 0.905 17 N -0.343 5.343 18 C 0.356 3.644 19 O -0.433 6.433 20 C -0.061 4.061 21 N -0.178 5.178 22 C -0.094 4.094 23 C -0.126 4.126 24 C -0.059 4.059 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.147 4.147 29 C -0.090 4.090 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.207 0.793 41 H 0.202 0.798 42 H 0.186 0.814 43 H 0.179 0.821 44 H 0.164 0.836 45 H 0.168 0.832 46 H 0.091 0.909 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.735 -31.124 6.674 31.840 hybrid contribution -0.167 0.866 0.173 0.899 sum 0.568 -30.258 6.847 31.028 Atomic orbital electron populations 1.69809 1.06495 1.25927 1.59785 1.25527 0.96392 1.00952 1.04069 0.85184 0.77706 0.79768 0.77396 1.21443 1.22272 1.19597 1.19593 0.91349 0.85228 1.40600 0.90838 1.42589 1.05450 1.00841 1.88704 1.20298 0.93784 0.84576 0.94374 0.94294 1.22102 0.99674 0.96537 0.98400 1.21405 0.98053 0.93454 1.01392 1.21816 1.00497 0.98644 0.94496 1.20881 0.93731 0.85469 0.94693 0.90520 1.45922 1.11596 1.19660 1.57087 1.18044 0.86839 0.81781 0.77717 1.90573 1.14608 1.78019 1.60139 1.21179 0.90775 0.93943 1.00173 1.67208 1.03793 1.33340 1.13471 1.22778 1.00864 0.89907 0.95823 1.22633 0.94393 0.98782 0.96830 1.18594 0.94187 0.94997 0.98142 1.21393 0.96274 0.95815 0.99243 1.21476 0.93703 0.99814 0.96864 1.21451 1.01818 0.93067 0.96836 1.22067 0.94371 0.99353 0.98914 1.18894 0.95732 0.94321 1.00026 1.21870 0.99179 0.93082 1.01279 0.94103 0.79511 0.92942 0.93719 0.90393 0.91946 0.91683 0.91098 0.74727 0.79311 0.79792 0.81361 0.82122 0.83647 0.83210 0.90918 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -13.24 9.93 84.03 0.83 -12.40 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -37.41 5.12 -322.93 -1.65 -39.07 16 10 C 0.18 7.11 2.77 44.99 0.12 7.23 16 11 H 0.04 1.62 8.08 -2.38 -0.02 1.60 16 12 C -0.13 -4.48 5.50 30.59 0.17 -4.31 16 13 C -0.10 -2.89 5.92 30.59 0.18 -2.71 16 14 C -0.12 -3.09 5.49 30.59 0.17 -2.92 16 15 C 0.16 4.57 2.45 44.98 0.11 4.68 16 16 H 0.08 2.47 7.58 -2.39 -0.02 2.45 16 17 N -0.69 -18.81 5.07 -445.40 -2.26 -21.07 16 18 C 0.57 16.67 7.74 86.82 0.67 17.34 16 19 O -0.55 -18.27 13.10 -3.84 -0.05 -18.32 16 20 C 0.09 2.34 6.81 42.43 0.29 2.63 16 21 N -0.47 -10.70 9.52 -184.95 -1.76 -12.46 16 22 C 0.05 0.83 11.06 84.30 0.93 1.76 16 23 C -0.11 -1.32 9.88 22.47 0.22 -1.10 16 24 C -0.05 -0.92 5.75 -21.29 -0.12 -1.04 16 25 C -0.11 -1.23 9.82 22.31 0.22 -1.01 16 26 C -0.10 -1.12 9.95 22.07 0.22 -0.90 16 27 C -0.11 -1.83 9.95 22.08 0.22 -1.62 16 28 C -0.13 -2.97 9.23 22.26 0.21 -2.76 16 29 C -0.09 -2.06 5.76 -21.14 -0.12 -2.18 16 30 C -0.12 -3.82 4.86 30.58 0.15 -3.67 16 31 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.37 20.24 7.80 -92.71 -0.72 19.52 16 33 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.42 10.31 7.97 -92.71 -0.74 9.58 16 40 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 42 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.15 4.11 4.97 -3.00 -0.01 4.09 16 46 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 47 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -72.33 383.08 1.07 -71.27 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.46 Total: 37.32 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.94 Total: -7.00 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -5.39 Total: -132.12 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -72.33 1.07 -71.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981298163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.606 kcal (2) G-P(sol) polarization free energy of solvation -72.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds