Wall clock time and date at job start Tue Mar 31 2020 23:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00298 * 2 1 4 4 H 1.48498 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47040 * 300.00271 * 3 2 1 6 6 H 1.48507 * 109.46613 * 59.99775 * 3 2 1 7 7 C 1.38817 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99734 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99600 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47033 * 325.00268 * 10 9 7 12 12 C 1.52994 * 109.47024 * 85.00543 * 10 9 7 13 13 C 1.53006 * 109.47217 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46706 * 300.00164 * 13 12 10 15 15 C 1.52994 * 109.47416 * 59.99959 * 14 13 12 16 16 H 1.09005 * 109.47436 * 60.00063 * 15 14 13 17 17 N 1.46500 * 109.47446 * 179.97438 * 15 14 13 18 18 C 1.34776 * 119.99976 * 275.00247 * 17 15 14 19 19 O 1.21537 * 120.00052 * 359.97438 * 18 17 15 20 20 C 1.47953 * 120.00256 * 179.97438 * 18 17 15 21 21 N 1.32205 * 120.15437 * 354.39321 * 20 18 17 22 22 C 1.32032 * 122.67942 * 180.02562 * 21 20 18 23 23 C 1.36688 * 122.02741 * 359.97438 * 22 21 20 24 24 C 1.40530 * 118.84836 * 0.02562 * 23 22 21 25 25 C 1.40315 * 122.21919 * 179.97438 * 24 23 22 26 26 C 1.36201 * 119.45624 * 180.02562 * 25 24 23 27 27 C 1.39386 * 121.00046 * 0.27618 * 26 25 24 28 28 C 1.36266 * 121.07563 * 359.42474 * 27 26 25 29 29 C 1.40086 * 119.54105 * 0.56754 * 28 27 26 30 30 C 1.52998 * 109.47400 * 299.99737 * 15 14 13 31 31 H 0.96996 * 119.99668 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00337 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47481 * 299.99807 * 12 10 9 34 34 H 1.09000 * 109.47440 * 59.99974 * 12 10 9 35 35 H 1.09000 * 109.46805 * 59.99747 * 13 12 10 36 36 H 1.08996 * 109.47259 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47148 * 299.99373 * 14 13 12 38 38 H 1.09005 * 109.46827 * 179.97438 * 14 13 12 39 39 H 0.97001 * 120.00058 * 94.99755 * 17 15 14 40 40 H 1.07997 * 118.98490 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.57270 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.27533 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.50533 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.46492 * 179.70333 * 27 26 25 45 45 H 1.08001 * 120.22602 * 180.28151 * 28 27 26 46 46 H 1.08999 * 109.47460 * 180.02562 * 30 15 14 47 47 H 1.09005 * 109.47092 * 300.00537 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 -0.5899 12 6 2.4217 -4.0357 1.4364 13 6 3.1862 -5.3611 1.4365 14 6 2.3085 -6.4560 0.8270 15 6 1.9448 -6.0772 -0.6100 16 1 2.8555 -5.9714 -1.1996 17 7 1.1048 -7.1259 -1.1939 18 6 1.6745 -8.2081 -1.7604 19 8 2.8849 -8.3137 -1.7873 20 6 0.8263 -9.2675 -2.3496 21 7 -0.4887 -9.2114 -2.2251 22 6 -1.2924 -10.1291 -2.7301 23 6 -0.8168 -11.2078 -3.4219 24 6 0.5709 -11.3417 -3.5989 25 6 1.1355 -12.4205 -4.2962 26 6 2.4885 -12.4946 -4.4337 27 6 3.3202 -11.5184 -3.8876 28 6 2.8050 -10.4545 -3.2096 29 6 1.4179 -10.3446 -3.0479 30 6 1.1803 -4.7519 -0.6102 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 3.0466 -3.2554 1.8709 34 1 1.5110 -4.1420 2.0258 35 1 4.0969 -5.2552 0.8470 36 1 3.4450 -5.6312 2.4603 37 1 1.3978 -6.5619 1.4165 38 1 2.8533 -7.4002 0.8266 39 1 0.1388 -7.0415 -1.1727 40 1 -2.3584 -10.0243 -2.5924 41 1 -1.4957 -11.9445 -3.8254 42 1 0.5024 -13.1858 -4.7204 43 1 2.9239 -13.3244 -4.9707 44 1 4.3900 -11.6043 -4.0074 45 1 3.4620 -9.7037 -2.7959 46 1 0.9208 -4.4822 -1.6339 47 1 0.2696 -4.8577 -0.0206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981298166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:29 Heat of formation + Delta-G solvation = 22.816353 kcal Electronic energy + Delta-G solvation = -28374.230622 eV Core-core repulsion = 24521.452242 eV Total energy + Delta-G solvation = -3852.778380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42072 -39.70017 -37.93819 -37.68071 -34.74413 -33.45223 -33.16862 -31.49202 -31.11537 -30.30931 -29.11156 -27.76203 -25.34792 -23.86692 -23.73086 -23.20952 -21.93900 -21.44773 -20.45813 -19.54157 -18.41899 -17.75759 -17.45043 -16.95215 -16.31106 -16.01980 -15.43986 -15.27460 -14.85145 -14.43136 -14.36461 -14.18282 -14.05789 -13.75243 -13.56719 -13.47121 -13.24836 -13.07043 -12.67051 -12.45925 -12.18776 -12.09423 -12.05328 -11.77978 -10.98375 -10.92693 -10.87734 -10.70284 -10.50677 -10.33847 -10.29533 -10.20273 -10.12172 -9.89364 -9.65773 -9.50141 -9.46293 -9.02252 -8.85629 -8.40340 -6.94308 -5.75291 -3.03762 -0.25439 0.54635 1.41462 2.41844 2.94206 2.98950 3.44473 3.50429 3.52414 3.80314 3.87154 4.21640 4.40343 4.43798 4.54439 4.59528 4.78180 4.85811 4.97776 4.99680 5.08306 5.12167 5.33199 5.37661 5.47532 5.52144 5.62492 5.68477 5.70612 5.73186 5.79272 5.89676 5.99138 6.02203 6.04138 6.14888 6.16555 6.23543 6.34073 6.37011 6.50968 6.54677 6.58368 6.65864 6.75057 6.98834 7.14626 7.29594 7.58706 7.72953 8.10221 8.43460 9.54679 10.12245 10.46984 11.47525 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.002155 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.841353 B =12990.353085 C =13403.277786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.146 3.854 16 H 0.091 0.909 17 N -0.696 5.696 18 C 0.573 3.427 19 O -0.531 6.531 20 C 0.126 3.874 21 N -0.456 5.456 22 C 0.074 3.926 23 C -0.133 4.133 24 C -0.031 4.031 25 C -0.121 4.121 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.090 4.090 29 C -0.072 4.072 30 C -0.130 4.130 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.411 0.589 40 H 0.161 0.839 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.174 0.826 46 H 0.069 0.931 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -28.336 -6.934 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.042 3.958 16 H 0.109 0.891 17 N -0.346 5.346 18 C 0.357 3.643 19 O -0.408 6.408 20 C -0.026 4.026 21 N -0.167 5.167 22 C -0.072 4.072 23 C -0.153 4.153 24 C -0.036 4.036 25 C -0.139 4.139 26 C -0.113 4.113 27 C -0.142 4.142 28 C -0.108 4.108 29 C -0.075 4.075 30 C -0.169 4.169 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.179 0.821 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.191 0.809 46 H 0.088 0.912 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.023 -27.550 -6.520 28.329 hybrid contribution -0.252 0.123 -0.453 0.533 sum 0.772 -27.427 -6.973 28.310 Atomic orbital electron populations 1.69670 1.05090 1.25483 1.57948 1.24743 0.95520 0.97679 1.03166 0.86135 0.78828 0.84219 0.77142 1.20540 1.21923 1.21935 1.19290 0.91041 0.84045 1.42279 0.91084 1.42415 1.05776 0.99711 1.88577 1.20095 0.94077 0.85508 0.92972 0.93320 1.22296 0.99755 0.95230 1.00480 1.21483 0.98484 0.95330 0.99959 1.21888 1.00250 0.98879 0.95251 1.21148 0.94476 0.86012 0.94136 0.89135 1.46058 1.11541 1.20021 1.56936 1.17728 0.86828 0.81562 0.78160 1.90581 1.13558 1.77726 1.58951 1.21445 0.90242 0.94320 0.96580 1.67283 1.04055 1.27719 1.17677 1.22210 0.99874 0.90137 0.94955 1.22154 0.94600 0.99452 0.99066 1.18208 0.93370 0.94837 0.97226 1.20923 0.95593 0.97464 0.99902 1.21092 0.93685 0.98592 0.97894 1.21145 1.00533 0.94470 0.98048 1.22221 0.94354 0.98731 0.95543 1.18702 0.95116 0.94742 0.98942 1.22099 0.99427 0.93149 1.02191 0.93613 0.78310 0.91869 0.92624 0.92126 0.92470 0.91911 0.92105 0.75321 0.82143 0.83984 0.85012 0.85520 0.85332 0.80888 0.91210 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -17.90 5.12 -53.42 -0.27 -18.17 16 10 C 0.18 3.57 2.77 -67.93 -0.19 3.39 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 13 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 14 C -0.12 -1.69 5.49 -26.73 -0.15 -1.84 16 15 C 0.15 2.08 2.45 -67.93 -0.17 1.92 16 16 H 0.09 1.40 7.57 -51.93 -0.39 1.00 16 17 N -0.70 -9.13 5.07 -54.72 -0.28 -9.41 16 18 C 0.57 7.95 7.74 -12.28 -0.10 7.85 16 19 O -0.53 -8.20 13.10 5.33 0.07 -8.13 16 20 C 0.13 1.60 6.81 -82.55 -0.56 1.03 16 21 N -0.46 -5.25 9.52 -9.81 -0.09 -5.34 16 22 C 0.07 0.65 11.06 -18.03 -0.20 0.45 16 23 C -0.13 -1.04 9.88 -39.28 -0.39 -1.42 16 24 C -0.03 -0.30 5.75 -106.83 -0.61 -0.91 16 25 C -0.12 -0.91 9.82 -39.53 -0.39 -1.30 16 26 C -0.09 -0.68 9.95 -39.89 -0.40 -1.07 16 27 C -0.12 -1.08 9.95 -39.86 -0.40 -1.47 16 28 C -0.09 -1.01 9.23 -39.60 -0.37 -1.38 16 29 C -0.07 -0.85 5.76 -106.60 -0.61 -1.47 16 30 C -0.13 -2.09 4.86 -26.73 -0.13 -2.22 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.41 4.95 7.97 -40.82 -0.33 4.62 16 40 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.17 2.17 4.96 -52.49 -0.26 1.91 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -32.04 383.08 -11.06 -43.10 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.76 Total: 12.13 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -5.20 Total: -9.96 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.08 Total: -60.33 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.07 Total: -8.13 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.04 -11.06 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981298166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.914 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds