Wall clock time and date at job start Tue Mar 31 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00298 * 2 1 4 4 H 1.48498 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47040 * 300.00271 * 3 2 1 6 6 H 1.48507 * 109.46613 * 59.99775 * 3 2 1 7 7 C 1.38817 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99734 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99600 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47033 * 325.00268 * 10 9 7 12 12 C 1.52994 * 109.47024 * 85.00543 * 10 9 7 13 13 C 1.53006 * 109.47217 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46706 * 300.00164 * 13 12 10 15 15 C 1.52994 * 109.47416 * 59.99959 * 14 13 12 16 16 H 1.09005 * 109.47436 * 60.00063 * 15 14 13 17 17 N 1.46500 * 109.47446 * 179.97438 * 15 14 13 18 18 C 1.34776 * 119.99976 * 275.00247 * 17 15 14 19 19 O 1.21537 * 120.00052 * 359.97438 * 18 17 15 20 20 C 1.47953 * 120.00256 * 179.97438 * 18 17 15 21 21 N 1.32205 * 120.15437 * 354.39321 * 20 18 17 22 22 C 1.32032 * 122.67942 * 180.02562 * 21 20 18 23 23 C 1.36688 * 122.02741 * 359.97438 * 22 21 20 24 24 C 1.40530 * 118.84836 * 0.02562 * 23 22 21 25 25 C 1.40315 * 122.21919 * 179.97438 * 24 23 22 26 26 C 1.36201 * 119.45624 * 180.02562 * 25 24 23 27 27 C 1.39386 * 121.00046 * 0.27618 * 26 25 24 28 28 C 1.36266 * 121.07563 * 359.42474 * 27 26 25 29 29 C 1.40086 * 119.54105 * 0.56754 * 28 27 26 30 30 C 1.52998 * 109.47400 * 299.99737 * 15 14 13 31 31 H 0.96996 * 119.99668 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00337 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47481 * 299.99807 * 12 10 9 34 34 H 1.09000 * 109.47440 * 59.99974 * 12 10 9 35 35 H 1.09000 * 109.46805 * 59.99747 * 13 12 10 36 36 H 1.08996 * 109.47259 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47148 * 299.99373 * 14 13 12 38 38 H 1.09005 * 109.46827 * 179.97438 * 14 13 12 39 39 H 0.97001 * 120.00058 * 94.99755 * 17 15 14 40 40 H 1.07997 * 118.98490 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.57270 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.27533 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.50533 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.46492 * 179.70333 * 27 26 25 45 45 H 1.08001 * 120.22602 * 180.28151 * 28 27 26 46 46 H 1.08999 * 109.47460 * 180.02562 * 30 15 14 47 47 H 1.09005 * 109.47092 * 300.00537 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 -0.5899 12 6 2.4217 -4.0357 1.4364 13 6 3.1862 -5.3611 1.4365 14 6 2.3085 -6.4560 0.8270 15 6 1.9448 -6.0772 -0.6100 16 1 2.8555 -5.9714 -1.1996 17 7 1.1048 -7.1259 -1.1939 18 6 1.6745 -8.2081 -1.7604 19 8 2.8849 -8.3137 -1.7873 20 6 0.8263 -9.2675 -2.3496 21 7 -0.4887 -9.2114 -2.2251 22 6 -1.2924 -10.1291 -2.7301 23 6 -0.8168 -11.2078 -3.4219 24 6 0.5709 -11.3417 -3.5989 25 6 1.1355 -12.4205 -4.2962 26 6 2.4885 -12.4946 -4.4337 27 6 3.3202 -11.5184 -3.8876 28 6 2.8050 -10.4545 -3.2096 29 6 1.4179 -10.3446 -3.0479 30 6 1.1803 -4.7519 -0.6102 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 3.0466 -3.2554 1.8709 34 1 1.5110 -4.1420 2.0258 35 1 4.0969 -5.2552 0.8470 36 1 3.4450 -5.6312 2.4603 37 1 1.3978 -6.5619 1.4165 38 1 2.8533 -7.4002 0.8266 39 1 0.1388 -7.0415 -1.1727 40 1 -2.3584 -10.0243 -2.5924 41 1 -1.4957 -11.9445 -3.8254 42 1 0.5024 -13.1858 -4.7204 43 1 2.9239 -13.3244 -4.9707 44 1 4.3900 -11.6043 -4.0074 45 1 3.4620 -9.7037 -2.7959 46 1 0.9208 -4.4822 -1.6339 47 1 0.2696 -4.8577 -0.0206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981298166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:28 Heat of formation + Delta-G solvation = 3.272569 kcal Electronic energy + Delta-G solvation = -28375.078104 eV Core-core repulsion = 24521.452242 eV Total energy + Delta-G solvation = -3853.625862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.19405 -40.76157 -39.23311 -38.36923 -36.29547 -34.88092 -33.98272 -32.93485 -32.17140 -31.21843 -30.26516 -29.35693 -26.19297 -25.67815 -24.52431 -24.05776 -23.18637 -22.63191 -21.61904 -20.90862 -19.45716 -18.96455 -18.44604 -18.12114 -17.42715 -16.78700 -16.62570 -16.36617 -16.11361 -15.60809 -15.52913 -15.26066 -15.20599 -15.00103 -14.80143 -14.67683 -14.36050 -14.13579 -13.87427 -13.59138 -13.40747 -13.14564 -12.91330 -12.84569 -12.73666 -12.50042 -12.25948 -12.13566 -12.02929 -11.97976 -11.66910 -11.45305 -11.37040 -11.19777 -11.04488 -10.88214 -10.47942 -10.16737 -10.11443 -9.07103 -8.99883 -7.93550 -5.21534 -0.98410 -0.12522 0.69490 1.47438 1.47653 1.57796 1.60293 1.93149 2.20509 2.56660 3.04979 3.07995 3.39795 3.59543 3.61236 3.68511 3.81139 3.84629 3.90338 4.03268 4.17844 4.25252 4.28642 4.29987 4.37131 4.43812 4.49668 4.52710 4.56621 4.65455 4.73449 4.75255 4.83224 4.99258 5.06422 5.10361 5.14649 5.16462 5.21859 5.34600 5.39940 5.41118 5.50253 5.52541 5.55157 5.63494 5.65969 5.90684 6.28900 6.34552 6.75035 7.07866 7.35171 8.10759 8.34539 9.30161 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.002155 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.841353 B =12990.353085 C =13403.277786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.074 0.926 9 N -0.736 5.736 10 C 0.178 3.822 11 H 0.039 0.961 12 C -0.127 4.127 13 C -0.104 4.104 14 C -0.116 4.116 15 C 0.157 3.843 16 H 0.077 0.923 17 N -0.693 5.693 18 C 0.570 3.430 19 O -0.554 6.554 20 C 0.090 3.910 21 N -0.466 5.466 22 C 0.053 3.947 23 C -0.107 4.107 24 C -0.054 4.054 25 C -0.110 4.110 26 C -0.100 4.100 27 C -0.114 4.114 28 C -0.128 4.128 29 C -0.087 4.087 30 C -0.115 4.115 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.416 0.584 40 H 0.190 0.810 41 H 0.185 0.815 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.059 0.941 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 -31.477 -7.861 32.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.366 4.366 8 H 0.092 0.908 9 N -0.376 5.376 10 C 0.070 3.930 11 H 0.058 0.942 12 C -0.167 4.167 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.052 3.948 16 H 0.095 0.905 17 N -0.343 5.343 18 C 0.356 3.644 19 O -0.433 6.433 20 C -0.061 4.061 21 N -0.178 5.178 22 C -0.094 4.094 23 C -0.126 4.126 24 C -0.059 4.059 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.147 4.147 29 C -0.090 4.090 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.253 0.747 40 H 0.207 0.793 41 H 0.202 0.798 42 H 0.187 0.813 43 H 0.179 0.821 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.078 0.922 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.773 -30.726 -7.441 31.624 hybrid contribution -0.174 0.909 -0.257 0.961 sum 0.599 -29.817 -7.698 30.801 Atomic orbital electron populations 1.69816 1.06499 1.25849 1.59880 1.25527 0.96391 1.00945 1.04109 0.85120 0.78264 0.80101 0.76597 1.19144 1.22159 1.22106 1.19631 0.91356 0.85208 1.40421 0.90808 1.42599 1.05457 1.00852 1.88681 1.20300 0.93796 0.84569 0.94369 0.94249 1.22100 0.99672 0.96519 0.98416 1.21407 0.98056 0.93464 1.01378 1.21815 1.00486 0.98609 0.94545 1.20893 0.93741 0.85459 0.94675 0.90463 1.45926 1.11594 1.19696 1.57055 1.18044 0.86836 0.81808 0.77688 1.90571 1.14615 1.78346 1.59807 1.21176 0.90713 0.95001 0.99180 1.67213 1.03776 1.28871 1.17892 1.22784 1.00916 0.90256 0.95404 1.22634 0.94336 0.99155 0.96521 1.18593 0.94181 0.95184 0.97960 1.21391 0.96208 0.96980 0.98142 1.21477 0.93716 0.98955 0.97721 1.21453 1.01851 0.93619 0.96267 1.22073 0.94352 1.00000 0.98319 1.18891 0.95671 0.95236 0.99202 1.21881 0.99174 0.93071 1.01288 0.94110 0.79511 0.93714 0.92942 0.91941 0.90423 0.91100 0.91769 0.74724 0.79269 0.79787 0.81348 0.82126 0.83669 0.83230 0.92245 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.23 -13.12 9.93 84.03 0.83 -12.29 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -37.34 5.12 -322.93 -1.65 -38.99 16 10 C 0.18 7.09 2.77 44.99 0.12 7.21 16 11 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 12 C -0.13 -4.48 5.50 30.59 0.17 -4.31 16 13 C -0.10 -2.90 5.92 30.60 0.18 -2.72 16 14 C -0.12 -3.11 5.49 30.59 0.17 -2.94 16 15 C 0.16 4.56 2.45 44.99 0.11 4.67 16 16 H 0.08 2.48 7.57 -2.38 -0.02 2.46 16 17 N -0.69 -18.79 5.07 -445.31 -2.26 -21.05 16 18 C 0.57 16.66 7.74 86.82 0.67 17.33 16 19 O -0.55 -18.27 13.10 -3.83 -0.05 -18.32 16 20 C 0.09 2.34 6.81 42.43 0.29 2.63 16 21 N -0.47 -10.61 9.52 -184.95 -1.76 -12.37 16 22 C 0.05 0.83 11.06 84.30 0.93 1.76 16 23 C -0.11 -1.32 9.88 22.47 0.22 -1.10 16 24 C -0.05 -0.92 5.75 -21.29 -0.12 -1.04 16 25 C -0.11 -1.24 9.82 22.30 0.22 -1.02 16 26 C -0.10 -1.13 9.95 22.07 0.22 -0.91 16 27 C -0.11 -1.86 9.95 22.09 0.22 -1.64 16 28 C -0.13 -3.00 9.23 22.26 0.21 -2.80 16 29 C -0.09 -2.07 5.76 -21.15 -0.12 -2.19 16 30 C -0.12 -3.81 4.86 30.59 0.15 -3.66 16 31 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.37 20.21 7.80 -92.71 -0.72 19.48 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.42 10.30 7.97 -92.71 -0.74 9.56 16 40 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 41 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 42 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 43 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 45 H 0.15 4.14 4.96 -3.01 -0.01 4.12 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -72.27 383.08 1.07 -71.20 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.46 Total: 37.25 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 4.94 Total: -7.06 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -5.39 Total: -131.91 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -72.27 1.07 -71.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981298166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.474 kcal (2) G-P(sol) polarization free energy of solvation -72.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds