Wall clock time and date at job start Tue Mar 31 2020 22:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00070 * 2 1 4 4 H 1.48499 * 109.47036 * 239.99643 * 3 2 1 5 5 H 1.48494 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46965 * 120.00081 * 3 2 1 7 7 C 1.38816 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00345 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00205 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46492 * 324.99939 * 10 9 7 12 12 C 1.53003 * 109.46962 * 84.99764 * 10 9 7 13 13 C 1.52995 * 109.46599 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47432 * 299.99997 * 13 12 10 15 15 C 1.52994 * 109.47352 * 60.00348 * 14 13 12 16 16 H 1.09003 * 109.47095 * 59.99752 * 15 14 13 17 17 N 1.46492 * 109.47456 * 179.97438 * 15 14 13 18 18 C 1.34775 * 120.00366 * 274.99721 * 17 15 14 19 19 O 1.21562 * 119.99934 * 0.02562 * 18 17 15 20 20 C 1.47762 * 120.00281 * 179.97438 * 18 17 15 21 21 C 1.40637 * 119.80692 * 0.02562 * 20 18 17 22 22 C 1.35694 * 120.92612 * 179.97438 * 21 20 18 23 23 C 1.40762 * 120.11348 * 0.02562 * 22 21 20 24 24 N 1.33647 * 120.83264 * 179.97438 * 23 22 21 25 25 C 1.31118 * 121.39292 * 180.02562 * 24 23 22 26 26 C 1.39319 * 121.76781 * 0.26430 * 25 24 23 27 27 C 1.36577 * 119.90542 * 359.44740 * 26 25 24 28 28 C 1.40897 * 118.15853 * 0.55176 * 27 26 25 29 29 C 1.38548 * 119.80715 * 179.97438 * 20 18 17 30 30 C 1.52995 * 109.47295 * 204.99900 * 10 9 7 31 31 H 0.97006 * 119.99985 * 0.02562 * 1 2 3 32 32 H 0.97009 * 120.00311 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47176 * 300.00055 * 12 10 9 34 34 H 1.08998 * 109.46769 * 60.00272 * 12 10 9 35 35 H 1.08998 * 109.47383 * 60.00593 * 13 12 10 36 36 H 1.09011 * 109.46637 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.47382 * 299.99855 * 14 13 12 38 38 H 1.09011 * 109.47072 * 180.02562 * 14 13 12 39 39 H 0.97006 * 120.00035 * 95.00264 * 17 15 14 40 40 H 1.08008 * 119.53322 * 359.97253 * 21 20 18 41 41 H 1.08007 * 119.94503 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.11208 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.04351 * 179.72125 * 26 25 24 44 44 H 1.08001 * 120.92224 * 180.22737 * 27 26 25 45 45 H 1.08002 * 120.29796 * 0.02562 * 29 20 18 46 46 H 1.09001 * 109.47404 * 59.99926 * 30 10 9 47 47 H 1.08998 * 109.47323 * 300.00272 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4219 -4.0357 1.4376 13 6 3.1873 -5.3604 1.4374 14 6 2.3106 -6.4560 0.8276 15 6 1.9467 -6.0772 -0.6093 16 1 2.8575 -5.9705 -1.1987 17 7 1.1078 -7.1265 -1.1934 18 6 1.6783 -8.2081 -1.7601 19 8 2.8891 -8.3131 -1.7862 20 6 0.8321 -9.2668 -2.3488 21 6 -0.5683 -9.1414 -2.3159 22 6 -1.3669 -10.0995 -2.8501 23 6 -0.7986 -11.2401 -3.4479 24 7 -1.5716 -12.1929 -3.9780 25 6 -1.0539 -13.2599 -4.5370 26 6 0.3234 -13.4585 -4.6029 27 6 1.1720 -12.5214 -4.0860 28 6 0.6120 -11.3764 -3.4857 29 6 1.4229 -10.3766 -2.9308 30 6 1.1808 -4.7522 -0.6090 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 0.0005 33 1 3.0468 -3.2553 1.8719 34 1 1.5112 -4.1419 2.0270 35 1 4.0981 -5.2537 0.8482 36 1 3.4470 -5.6300 2.4612 37 1 1.4000 -6.5627 1.4170 38 1 2.8559 -7.3999 0.8280 39 1 0.1416 -7.0429 -1.1724 40 1 -1.0142 -8.2702 -1.8591 41 1 -2.4406 -9.9873 -2.8158 42 1 -1.7132 -14.0072 -4.9536 43 1 0.7197 -14.3502 -5.0660 44 1 2.2425 -12.6569 -4.1314 45 1 2.4985 -10.4712 -2.9556 46 1 0.9215 -4.4824 -1.6328 47 1 0.2701 -4.8584 -0.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981308821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:11 Heat of formation + Delta-G solvation = 16.500818 kcal Electronic energy + Delta-G solvation = -27899.060530 eV Core-core repulsion = 24046.008288 eV Total energy + Delta-G solvation = -3853.052242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29919 -40.03160 -38.15086 -36.94090 -34.78698 -33.93396 -33.39194 -31.32006 -31.09119 -30.46922 -29.21550 -27.78523 -25.22719 -24.26388 -23.73094 -22.66341 -22.03626 -21.61961 -20.56050 -19.64555 -18.56567 -18.14218 -17.32948 -17.03007 -16.22598 -16.07480 -15.21071 -14.96914 -14.85470 -14.60813 -14.44587 -14.35443 -13.99883 -13.83870 -13.78631 -13.53848 -13.49682 -13.15612 -12.74555 -12.45313 -12.20419 -12.12945 -11.94260 -11.85450 -11.03291 -11.00154 -10.95415 -10.86974 -10.73553 -10.36874 -10.34335 -10.19488 -10.15079 -9.94962 -9.74161 -9.61188 -9.27453 -9.02854 -8.87033 -8.67911 -6.96927 -5.77256 -3.05878 -0.17406 0.25127 1.50394 2.09244 3.01514 3.09075 3.44100 3.48658 3.49398 3.72466 3.81515 4.14776 4.24699 4.37843 4.46551 4.57298 4.59679 4.69029 4.76589 4.97525 5.03049 5.07475 5.30072 5.32984 5.46113 5.49130 5.51704 5.59100 5.59664 5.67323 5.72014 5.83324 5.85501 5.89097 5.95925 6.01369 6.05510 6.12980 6.27983 6.31133 6.32069 6.50517 6.52267 6.60514 6.71827 6.95807 7.11611 7.42300 7.44690 7.70017 8.09574 8.41440 9.52584 10.09713 10.44522 11.45359 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.001941 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.544944 B =14418.549535 C =15054.570871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.089 0.911 17 N -0.716 5.716 18 C 0.557 3.443 19 O -0.537 6.537 20 C -0.131 4.131 21 C -0.074 4.074 22 C -0.097 4.097 23 C 0.142 3.858 24 N -0.478 5.478 25 C 0.139 3.861 26 C -0.181 4.181 27 C -0.045 4.045 28 C -0.114 4.114 29 C -0.026 4.026 30 C -0.130 4.130 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.399 0.601 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.069 0.931 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -28.442 -6.541 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.107 0.893 17 N -0.366 5.366 18 C 0.344 3.656 19 O -0.415 6.415 20 C -0.134 4.134 21 C -0.095 4.095 22 C -0.115 4.115 23 C 0.021 3.979 24 N -0.186 5.186 25 C -0.033 4.033 26 C -0.201 4.201 27 C -0.071 4.071 28 C -0.116 4.116 29 C -0.046 4.046 30 C -0.169 4.169 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.234 0.766 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.029 -28.101 -6.476 28.856 hybrid contribution 0.494 0.823 0.015 0.960 sum -0.536 -27.278 -6.461 28.037 Atomic orbital electron populations 1.69645 1.05094 1.25746 1.57738 1.24736 0.95520 0.97676 1.03060 0.86276 0.78527 0.83581 0.77861 1.21281 1.21731 1.21278 1.19200 0.90994 0.84069 1.42644 0.91193 1.42391 1.05728 0.99680 1.88632 1.20096 0.94106 0.85520 0.92984 0.93338 1.22293 0.99728 0.95240 1.00469 1.21485 0.98517 0.95351 0.99966 1.21882 1.00178 0.98877 0.95314 1.21091 0.94487 0.85929 0.94049 0.89257 1.46099 1.10638 1.21029 1.58877 1.18153 0.87636 0.81820 0.78007 1.90780 1.13979 1.78241 1.58503 1.20026 0.93712 0.96547 1.03088 1.21000 0.92156 0.98899 0.97404 1.20701 1.00909 0.91976 0.97946 1.19025 0.89029 0.94058 0.95820 1.68087 1.39238 1.01803 1.09468 1.23064 0.93434 0.94059 0.92753 1.21922 0.94845 1.00986 1.02369 1.21593 1.00878 0.91653 0.93012 1.18819 0.94259 0.96641 1.01907 1.21459 1.00489 0.90595 0.92074 1.22109 0.99370 0.93294 1.02097 0.93496 0.78333 0.91870 0.92644 0.92153 0.92482 0.92008 0.92152 0.76583 0.84656 0.83997 0.82178 0.84219 0.83950 0.83626 0.91237 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.65 5.12 -53.42 -0.27 -17.92 16 10 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.37 5.50 -26.73 -0.15 -2.52 16 13 C -0.11 -1.62 5.92 -26.74 -0.16 -1.78 16 14 C -0.12 -1.65 5.49 -26.74 -0.15 -1.79 16 15 C 0.15 2.04 2.45 -67.91 -0.17 1.87 16 16 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 17 N -0.72 -8.35 5.03 -54.76 -0.28 -8.62 16 18 C 0.56 7.15 7.73 -12.37 -0.10 7.06 16 19 O -0.54 -8.64 15.97 5.31 0.08 -8.56 16 20 C -0.13 -1.39 5.87 -104.98 -0.62 -2.00 16 21 C -0.07 -0.65 9.44 -39.59 -0.37 -1.02 16 22 C -0.10 -0.88 9.95 -39.54 -0.39 -1.27 16 23 C 0.14 1.44 6.61 -84.78 -0.56 0.88 16 24 N -0.48 -4.70 10.33 -10.91 -0.11 -4.81 16 25 C 0.14 0.95 11.15 -17.45 -0.19 0.76 16 26 C -0.18 -1.02 10.03 -39.78 -0.40 -1.42 16 27 C -0.05 -0.31 9.89 -39.18 -0.39 -0.70 16 28 C -0.11 -1.07 5.74 -106.82 -0.61 -1.68 16 29 C -0.03 -0.26 9.35 -38.74 -0.36 -0.63 16 30 C -0.13 -2.01 4.86 -26.71 -0.13 -2.13 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.40 3.65 6.59 -40.82 -0.27 3.38 16 40 H 0.14 0.86 6.35 -52.48 -0.33 0.53 16 41 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.15 1.37 7.62 -52.49 -0.40 0.97 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -33.54 386.07 -10.99 -44.53 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.75 Total: 9.65 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -5.18 Total: -10.21 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.06 Total: -58.52 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.54 -10.99 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981308821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.027 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds