Wall clock time and date at job start Tue Mar 31 2020 22:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00070 * 2 1 4 4 H 1.48499 * 109.47036 * 239.99643 * 3 2 1 5 5 H 1.48494 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46965 * 120.00081 * 3 2 1 7 7 C 1.38816 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00345 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00205 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46492 * 324.99939 * 10 9 7 12 12 C 1.53003 * 109.46962 * 84.99764 * 10 9 7 13 13 C 1.52995 * 109.46599 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47432 * 299.99997 * 13 12 10 15 15 C 1.52994 * 109.47352 * 60.00348 * 14 13 12 16 16 H 1.09003 * 109.47095 * 59.99752 * 15 14 13 17 17 N 1.46492 * 109.47456 * 179.97438 * 15 14 13 18 18 C 1.34775 * 120.00366 * 274.99721 * 17 15 14 19 19 O 1.21562 * 119.99934 * 0.02562 * 18 17 15 20 20 C 1.47762 * 120.00281 * 179.97438 * 18 17 15 21 21 C 1.40637 * 119.80692 * 0.02562 * 20 18 17 22 22 C 1.35694 * 120.92612 * 179.97438 * 21 20 18 23 23 C 1.40762 * 120.11348 * 0.02562 * 22 21 20 24 24 N 1.33647 * 120.83264 * 179.97438 * 23 22 21 25 25 C 1.31118 * 121.39292 * 180.02562 * 24 23 22 26 26 C 1.39319 * 121.76781 * 0.26430 * 25 24 23 27 27 C 1.36577 * 119.90542 * 359.44740 * 26 25 24 28 28 C 1.40897 * 118.15853 * 0.55176 * 27 26 25 29 29 C 1.38548 * 119.80715 * 179.97438 * 20 18 17 30 30 C 1.52995 * 109.47295 * 204.99900 * 10 9 7 31 31 H 0.97006 * 119.99985 * 0.02562 * 1 2 3 32 32 H 0.97009 * 120.00311 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47176 * 300.00055 * 12 10 9 34 34 H 1.08998 * 109.46769 * 60.00272 * 12 10 9 35 35 H 1.08998 * 109.47383 * 60.00593 * 13 12 10 36 36 H 1.09011 * 109.46637 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.47382 * 299.99855 * 14 13 12 38 38 H 1.09011 * 109.47072 * 180.02562 * 14 13 12 39 39 H 0.97006 * 120.00035 * 95.00264 * 17 15 14 40 40 H 1.08008 * 119.53322 * 359.97253 * 21 20 18 41 41 H 1.08007 * 119.94503 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.11208 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.04351 * 179.72125 * 26 25 24 44 44 H 1.08001 * 120.92224 * 180.22737 * 27 26 25 45 45 H 1.08002 * 120.29796 * 0.02562 * 29 20 18 46 46 H 1.09001 * 109.47404 * 59.99926 * 30 10 9 47 47 H 1.08998 * 109.47323 * 300.00272 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4219 -4.0357 1.4376 13 6 3.1873 -5.3604 1.4374 14 6 2.3106 -6.4560 0.8276 15 6 1.9467 -6.0772 -0.6093 16 1 2.8575 -5.9705 -1.1987 17 7 1.1078 -7.1265 -1.1934 18 6 1.6783 -8.2081 -1.7601 19 8 2.8891 -8.3131 -1.7862 20 6 0.8321 -9.2668 -2.3488 21 6 -0.5683 -9.1414 -2.3159 22 6 -1.3669 -10.0995 -2.8501 23 6 -0.7986 -11.2401 -3.4479 24 7 -1.5716 -12.1929 -3.9780 25 6 -1.0539 -13.2599 -4.5370 26 6 0.3234 -13.4585 -4.6029 27 6 1.1720 -12.5214 -4.0860 28 6 0.6120 -11.3764 -3.4857 29 6 1.4229 -10.3766 -2.9308 30 6 1.1808 -4.7522 -0.6090 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 0.0005 33 1 3.0468 -3.2553 1.8719 34 1 1.5112 -4.1419 2.0270 35 1 4.0981 -5.2537 0.8482 36 1 3.4470 -5.6300 2.4612 37 1 1.4000 -6.5627 1.4170 38 1 2.8559 -7.3999 0.8280 39 1 0.1416 -7.0429 -1.1724 40 1 -1.0142 -8.2702 -1.8591 41 1 -2.4406 -9.9873 -2.8158 42 1 -1.7132 -14.0072 -4.9536 43 1 0.7197 -14.3502 -5.0660 44 1 2.2425 -12.6569 -4.1314 45 1 2.4985 -10.4712 -2.9556 46 1 0.9215 -4.4824 -1.6328 47 1 0.2701 -4.8584 -0.0197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981308821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:10 Heat of formation + Delta-G solvation = -4.340465 kcal Electronic energy + Delta-G solvation = -27899.964276 eV Core-core repulsion = 24046.008288 eV Total energy + Delta-G solvation = -3853.955988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97252 -41.01536 -39.38366 -37.70406 -36.27997 -34.92958 -34.47956 -32.95927 -32.01790 -31.11604 -30.44393 -29.34779 -26.01047 -25.64068 -24.87112 -23.50899 -23.11664 -22.74178 -21.69114 -20.95933 -19.56648 -19.03733 -18.72824 -18.00178 -17.25852 -16.89551 -16.45230 -16.18731 -15.90952 -15.55096 -15.42044 -15.34232 -15.12423 -15.04333 -14.94682 -14.76587 -14.44470 -14.22022 -13.99125 -13.60139 -13.41162 -13.10212 -12.90776 -12.80198 -12.69724 -12.49659 -12.27924 -12.16047 -12.04726 -11.96518 -11.64762 -11.61473 -11.53025 -11.38698 -10.96811 -10.85448 -10.52597 -10.16524 -9.83126 -9.35285 -8.99096 -7.93151 -5.20792 -0.82371 -0.35719 0.85875 1.38467 1.47577 1.49828 1.55820 2.02781 2.27300 2.57223 3.06989 3.26122 3.39897 3.54048 3.57338 3.63208 3.72980 3.86627 3.95322 3.98989 4.04151 4.04925 4.22491 4.30821 4.32636 4.42965 4.51220 4.53069 4.58170 4.66872 4.75801 4.77166 4.87041 4.94763 5.00804 5.02867 5.11398 5.15813 5.18691 5.22612 5.25995 5.35745 5.42469 5.49620 5.50947 5.53999 5.66298 5.74210 6.29413 6.47911 6.87394 7.12742 7.35824 8.11783 8.35531 9.29901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.001941 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.544944 B =14418.549535 C =15054.570871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.036 0.964 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.071 0.929 17 N -0.706 5.706 18 C 0.559 3.441 19 O -0.575 6.575 20 C -0.148 4.148 21 C -0.072 4.072 22 C -0.105 4.105 23 C 0.123 3.877 24 N -0.510 5.510 25 C 0.139 3.861 26 C -0.172 4.172 27 C -0.053 4.053 28 C -0.130 4.130 29 C -0.027 4.027 30 C -0.116 4.116 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.192 0.808 43 H 0.177 0.823 44 H 0.165 0.835 45 H 0.146 0.854 46 H 0.061 0.939 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -30.788 -6.928 31.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.054 0.946 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.089 0.911 17 N -0.357 5.357 18 C 0.348 3.652 19 O -0.456 6.456 20 C -0.151 4.151 21 C -0.092 4.092 22 C -0.123 4.123 23 C 0.002 3.998 24 N -0.219 5.219 25 C -0.033 4.033 26 C -0.191 4.191 27 C -0.079 4.079 28 C -0.133 4.133 29 C -0.047 4.047 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.209 0.791 43 H 0.194 0.806 44 H 0.183 0.817 45 H 0.163 0.837 46 H 0.080 0.920 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.896 -30.484 -6.860 31.259 hybrid contribution 0.468 1.354 0.047 1.433 sum -0.429 -29.130 -6.813 29.919 Atomic orbital electron populations 1.69792 1.06413 1.25989 1.59662 1.25496 0.96379 1.00852 1.04031 0.85281 0.77252 0.79584 0.78081 1.20640 1.22182 1.20534 1.19548 0.91314 0.85324 1.40797 0.90993 1.42562 1.05443 1.00756 1.88718 1.20309 0.93853 0.84742 0.94302 0.94577 1.22098 0.99666 0.96396 0.98514 1.21410 0.98077 0.93692 1.01295 1.21814 1.00558 0.98369 0.94749 1.20809 0.93743 0.85615 0.94462 0.91078 1.45912 1.11203 1.20224 1.58393 1.18457 0.87343 0.82090 0.77354 1.90755 1.15632 1.79101 1.60079 1.19904 0.94259 0.96355 1.04541 1.21126 0.91266 0.99553 0.97248 1.20896 1.01548 0.91929 0.97950 1.19306 0.89595 0.94652 0.96236 1.68128 1.39883 1.02884 1.10984 1.23740 0.94814 0.93570 0.91164 1.22330 0.94148 1.01619 1.01034 1.21957 1.02403 0.91003 0.92523 1.18989 0.94110 0.97502 1.02656 1.21555 1.00630 0.90709 0.91813 1.21893 0.99192 0.92903 1.01441 0.94093 0.79413 0.94015 0.92745 0.92308 0.90566 0.90676 0.91955 0.74949 0.82620 0.82900 0.79117 0.80574 0.81713 0.83674 0.91993 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.24 -13.16 9.93 84.03 0.83 -12.32 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.74 -36.35 5.12 -322.93 -1.65 -38.00 16 10 C 0.18 6.79 2.77 44.99 0.12 6.92 16 11 H 0.04 1.47 8.08 -2.39 -0.02 1.46 16 12 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 13 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 14 C -0.12 -2.90 5.49 30.59 0.17 -2.73 16 15 C 0.16 4.24 2.45 45.01 0.11 4.35 16 16 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 17 N -0.71 -15.80 5.03 -445.43 -2.24 -18.04 16 18 C 0.56 14.18 7.73 86.76 0.67 14.85 16 19 O -0.57 -18.62 15.97 -3.91 -0.06 -18.68 16 20 C -0.15 -3.08 5.87 -20.10 -0.12 -3.20 16 21 C -0.07 -1.20 9.44 22.27 0.21 -0.99 16 22 C -0.10 -1.83 9.95 22.30 0.22 -1.61 16 23 C 0.12 2.42 6.61 40.36 0.27 2.68 16 24 N -0.51 -9.39 10.33 -188.44 -1.95 -11.33 16 25 C 0.14 1.56 11.15 85.06 0.95 2.51 16 26 C -0.17 -1.41 10.03 22.14 0.22 -1.19 16 27 C -0.05 -0.62 9.89 22.53 0.22 -0.40 16 28 C -0.13 -2.34 5.74 -21.29 -0.12 -2.46 16 29 C -0.03 -0.54 9.35 22.82 0.21 -0.33 16 30 C -0.12 -3.51 4.86 30.61 0.15 -3.36 16 31 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 32 H 0.37 19.64 7.80 -92.70 -0.72 18.91 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.41 6.93 6.59 -92.70 -0.61 6.31 16 40 H 0.16 1.76 6.35 -2.91 -0.02 1.74 16 41 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.18 0.12 8.06 -2.91 -0.02 0.09 16 44 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 45 H 0.15 2.76 7.62 -2.91 -0.02 2.74 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -73.68 386.07 1.01 -72.66 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.33 Total: 31.53 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.94 Total: -7.99 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.56 Total: -125.84 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.68 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.68 1.01 -72.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981308821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.324 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds