Wall clock time and date at job start Tue Mar 31 2020 23:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00150 * 2 1 4 4 H 1.48497 * 109.47271 * 270.00283 * 3 2 1 5 5 H 1.48505 * 109.47104 * 30.00375 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99962 * 3 2 1 7 7 C 1.38808 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00527 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99595 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99605 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47338 * 34.99618 * 10 9 7 12 12 C 1.53003 * 109.46967 * 274.99079 * 10 9 7 13 13 C 1.53003 * 109.46811 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46860 * 60.01012 * 13 12 10 15 15 C 1.52999 * 109.47188 * 299.99296 * 14 13 12 16 16 H 1.08999 * 109.47091 * 300.00470 * 15 14 13 17 17 N 1.46499 * 109.47341 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 15 14 19 19 O 1.21563 * 120.00283 * 359.72077 * 18 17 15 20 20 C 1.47761 * 119.99834 * 179.72378 * 18 17 15 21 21 C 1.40608 * 120.26719 * 359.97438 * 20 18 17 22 22 N 1.30791 * 121.53670 * 179.97438 * 21 20 18 23 23 C 1.33825 * 121.72071 * 359.97438 * 22 21 20 24 24 C 1.40523 * 120.81867 * 180.02562 * 23 22 21 25 25 C 1.36136 * 119.81531 * 179.97438 * 24 23 22 26 26 C 1.39337 * 121.08837 * 0.04258 * 25 24 23 27 27 C 1.36147 * 120.83379 * 359.97438 * 26 25 24 28 28 C 1.40544 * 119.61581 * 0.02562 * 27 26 25 29 29 C 1.39007 * 120.27202 * 179.71694 * 20 18 17 30 30 C 1.53001 * 109.46944 * 60.00112 * 15 14 13 31 31 H 0.97003 * 119.99576 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00160 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47531 * 300.00421 * 12 10 9 34 34 H 1.09005 * 109.46473 * 60.00406 * 12 10 9 35 35 H 1.09002 * 109.46570 * 179.97438 * 13 12 10 36 36 H 1.08993 * 109.47787 * 300.00199 * 13 12 10 37 37 H 1.09001 * 109.47132 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47488 * 59.99523 * 14 13 12 39 39 H 0.97001 * 119.99790 * 264.99588 * 17 15 14 40 40 H 1.07996 * 119.22826 * 359.95762 * 21 20 18 41 41 H 1.08005 * 120.09806 * 359.95995 * 24 23 22 42 42 H 1.08003 * 119.45566 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.58544 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.19240 * 180.02562 * 27 26 25 45 45 H 1.08004 * 121.01149 * 0.03055 * 29 20 18 46 46 H 1.08999 * 109.46935 * 60.00262 * 30 15 14 47 47 H 1.09004 * 109.47138 * 180.02562 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5648 -3.2059 -0.5915 12 6 4.2577 -2.9770 1.4354 13 6 5.0221 -4.3024 1.4341 14 6 6.4095 -4.0903 0.8251 15 6 6.2639 -3.5843 -0.6114 16 1 5.7164 -4.3190 -1.2017 17 7 7.5924 -3.3818 -1.1949 18 6 8.2415 -4.4150 -1.7674 19 8 7.7269 -5.5159 -1.7951 20 6 9.5788 -4.2094 -2.3612 21 6 10.1792 -2.9383 -2.3327 22 7 11.3618 -2.7285 -2.8504 23 6 12.0597 -3.7112 -3.4320 24 6 13.3292 -3.4646 -3.9817 25 6 14.0216 -4.4795 -4.5681 26 6 13.4925 -5.7668 -4.6353 27 6 12.2657 -6.0450 -4.1145 28 6 11.5229 -5.0214 -3.5017 29 6 10.2559 -5.2723 -2.9479 30 6 5.4995 -2.2590 -0.6102 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.8049 -2.2421 2.0258 34 1 3.2692 -3.1284 1.8692 35 1 5.1263 -4.6626 2.4576 36 1 4.4745 -5.0371 0.8439 37 1 6.9542 -5.0345 0.8246 38 1 6.9571 -3.3556 1.4154 39 1 8.0030 -2.5033 -1.1728 40 1 9.6513 -2.1159 -1.8729 41 1 13.7545 -2.4727 -3.9393 42 1 14.9970 -4.2837 -4.9884 43 1 14.0627 -6.5537 -5.1065 44 1 11.8657 -7.0465 -4.1720 45 1 9.8199 -6.2598 -2.9805 46 1 6.0471 -1.5242 -0.0200 47 1 5.3954 -1.8986 -1.6337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981350243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:37 Heat of formation + Delta-G solvation = 20.426074 kcal Electronic energy + Delta-G solvation = -27982.288772 eV Core-core repulsion = 24129.406742 eV Total energy + Delta-G solvation = -3852.882030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38767 -39.98844 -38.18706 -37.28445 -34.92844 -33.86816 -33.49948 -31.44145 -31.25759 -30.52421 -29.38421 -28.21443 -25.14159 -24.51083 -23.50384 -22.55754 -22.24532 -21.60111 -20.56830 -19.77073 -18.66788 -18.23747 -17.59555 -17.42463 -16.25707 -16.04653 -15.37734 -15.04649 -14.90098 -14.63171 -14.55714 -14.48848 -14.04764 -13.94352 -13.82321 -13.62880 -13.43802 -13.25036 -12.70742 -12.34859 -12.28983 -12.25233 -12.20561 -11.95966 -11.29133 -11.07652 -10.99190 -10.94283 -10.89461 -10.58232 -10.45323 -10.32409 -10.09729 -9.97782 -9.70859 -9.59505 -9.33264 -9.10640 -8.91281 -8.75638 -7.28476 -5.77584 -3.13437 -0.21190 0.16056 1.42123 2.15676 2.89119 2.94535 3.36093 3.38464 3.44388 3.67031 3.72628 4.09738 4.24487 4.31812 4.34635 4.53223 4.57888 4.64386 4.73066 4.82387 4.93595 4.96680 5.21398 5.28471 5.38132 5.40723 5.43988 5.48207 5.55509 5.57473 5.59126 5.75605 5.78077 5.81813 5.90188 5.91747 5.98921 6.03855 6.16825 6.18743 6.29735 6.33814 6.44068 6.47611 6.61924 6.86735 7.01102 7.29860 7.39068 7.98408 7.99017 8.41401 9.19703 9.92078 10.11555 11.40696 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.002101 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.223294 B =13322.314878 C =14236.765216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.188 3.812 11 H 0.058 0.942 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.149 3.851 16 H 0.092 0.908 17 N -0.717 5.717 18 C 0.564 3.436 19 O -0.533 6.533 20 C -0.192 4.192 21 C 0.162 3.838 22 N -0.475 5.475 23 C 0.141 3.859 24 C -0.098 4.098 25 C -0.092 4.092 26 C -0.121 4.121 27 C -0.085 4.085 28 C -0.113 4.113 29 C 0.013 3.987 30 C -0.135 4.135 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.398 0.602 40 H 0.162 0.838 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.154 0.846 46 H 0.064 0.936 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.930 -11.036 -6.704 32.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.078 3.922 11 H 0.076 0.924 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.110 0.890 17 N -0.367 5.367 18 C 0.350 3.650 19 O -0.411 6.411 20 C -0.197 4.197 21 C -0.012 4.012 22 N -0.182 5.182 23 C 0.020 3.980 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.139 4.139 27 C -0.104 4.104 28 C -0.115 4.115 29 C -0.014 4.014 30 C -0.173 4.173 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.233 0.767 40 H 0.179 0.821 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.172 0.828 46 H 0.083 0.917 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 29.741 -11.054 -6.755 32.439 hybrid contribution 0.352 0.967 0.082 1.033 sum 30.093 -10.086 -6.672 32.432 Atomic orbital electron populations 1.69703 1.05096 1.25788 1.57544 1.24680 0.95238 0.97201 1.02105 0.86549 0.79185 0.85044 0.77711 1.21145 1.21807 1.20356 1.19074 0.80517 0.94719 1.42898 0.89141 1.42762 1.04013 1.01894 1.90333 1.20070 0.89345 0.89331 0.93434 0.92396 1.22262 1.00261 0.95242 0.99995 1.21481 0.94921 0.98742 1.00179 1.21895 0.98241 1.01014 0.95172 1.21073 0.81535 0.98615 0.94258 0.88967 1.46080 1.19829 1.11949 1.58856 1.17943 0.84379 0.84753 0.77958 1.90794 1.67686 1.24119 1.58489 1.21016 0.97219 0.95955 1.05534 1.23072 0.90573 0.94880 0.92657 1.67961 1.07334 1.33278 1.09648 1.19033 0.94770 0.88575 0.95619 1.20859 0.92539 1.00411 0.97885 1.21017 1.00014 0.92644 0.97466 1.20977 0.95887 0.97154 0.99834 1.21101 0.94483 0.98437 0.96380 1.18849 0.95696 0.95145 1.01836 1.21992 0.91157 0.99498 0.88736 1.22151 0.97540 0.95519 1.02134 0.93080 0.80722 0.92747 0.91364 0.92296 0.91917 0.92005 0.92001 0.76679 0.82053 0.84401 0.85001 0.85162 0.84751 0.82812 0.91703 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 7 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.02 4.93 -53.42 -0.26 -17.28 16 10 C 0.19 3.41 2.77 -67.92 -0.19 3.22 16 11 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 12 C -0.14 -2.27 5.50 -26.73 -0.15 -2.42 16 13 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 14 C -0.12 -1.55 5.50 -26.73 -0.15 -1.70 16 15 C 0.15 1.90 2.46 -67.93 -0.17 1.74 16 16 H 0.09 1.34 7.57 -51.93 -0.39 0.95 16 17 N -0.72 -7.67 5.03 -54.78 -0.28 -7.94 16 18 C 0.56 6.81 7.74 -12.37 -0.10 6.71 16 19 O -0.53 -8.18 16.04 5.31 0.09 -8.09 16 20 C -0.19 -1.97 5.89 -104.83 -0.62 -2.59 16 21 C 0.16 1.52 10.68 -17.10 -0.18 1.34 16 22 N -0.48 -5.03 10.30 -10.67 -0.11 -5.14 16 23 C 0.14 1.39 6.61 -84.79 -0.56 0.83 16 24 C -0.10 -0.76 9.97 -39.48 -0.39 -1.15 16 25 C -0.09 -0.52 9.94 -39.93 -0.40 -0.92 16 26 C -0.12 -0.66 9.96 -39.92 -0.40 -1.06 16 27 C -0.09 -0.57 9.77 -39.46 -0.39 -0.96 16 28 C -0.11 -1.03 5.74 -106.82 -0.61 -1.64 16 29 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 30 C -0.13 -1.91 4.86 -26.73 -0.13 -2.04 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.36 8.03 5.66 -40.82 -0.23 7.80 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 3.21 6.63 -40.82 -0.27 2.94 16 40 H 0.16 1.07 6.37 -52.49 -0.33 0.73 16 41 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.13 0.40 8.06 -52.48 -0.42 -0.03 16 43 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.15 1.34 7.70 -52.48 -0.40 0.93 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -34.18 383.17 -10.64 -44.82 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.72 Total: 8.52 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -5.20 Total: -9.41 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.13 Total: -58.71 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.18 -10.64 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981350243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.250 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds