Wall clock time and date at job start Tue Mar 31 2020 23:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00150 * 2 1 4 4 H 1.48497 * 109.47271 * 270.00283 * 3 2 1 5 5 H 1.48505 * 109.47104 * 30.00375 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99962 * 3 2 1 7 7 C 1.38808 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00527 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99595 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99605 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47338 * 34.99618 * 10 9 7 12 12 C 1.53003 * 109.46967 * 274.99079 * 10 9 7 13 13 C 1.53003 * 109.46811 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46860 * 60.01012 * 13 12 10 15 15 C 1.52999 * 109.47188 * 299.99296 * 14 13 12 16 16 H 1.08999 * 109.47091 * 300.00470 * 15 14 13 17 17 N 1.46499 * 109.47341 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 15 14 19 19 O 1.21563 * 120.00283 * 359.72077 * 18 17 15 20 20 C 1.47761 * 119.99834 * 179.72378 * 18 17 15 21 21 C 1.40608 * 120.26719 * 359.97438 * 20 18 17 22 22 N 1.30791 * 121.53670 * 179.97438 * 21 20 18 23 23 C 1.33825 * 121.72071 * 359.97438 * 22 21 20 24 24 C 1.40523 * 120.81867 * 180.02562 * 23 22 21 25 25 C 1.36136 * 119.81531 * 179.97438 * 24 23 22 26 26 C 1.39337 * 121.08837 * 0.04258 * 25 24 23 27 27 C 1.36147 * 120.83379 * 359.97438 * 26 25 24 28 28 C 1.40544 * 119.61581 * 0.02562 * 27 26 25 29 29 C 1.39007 * 120.27202 * 179.71694 * 20 18 17 30 30 C 1.53001 * 109.46944 * 60.00112 * 15 14 13 31 31 H 0.97003 * 119.99576 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00160 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47531 * 300.00421 * 12 10 9 34 34 H 1.09005 * 109.46473 * 60.00406 * 12 10 9 35 35 H 1.09002 * 109.46570 * 179.97438 * 13 12 10 36 36 H 1.08993 * 109.47787 * 300.00199 * 13 12 10 37 37 H 1.09001 * 109.47132 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47488 * 59.99523 * 14 13 12 39 39 H 0.97001 * 119.99790 * 264.99588 * 17 15 14 40 40 H 1.07996 * 119.22826 * 359.95762 * 21 20 18 41 41 H 1.08005 * 120.09806 * 359.95995 * 24 23 22 42 42 H 1.08003 * 119.45566 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.58544 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.19240 * 180.02562 * 27 26 25 45 45 H 1.08004 * 121.01149 * 0.03055 * 29 20 18 46 46 H 1.08999 * 109.46935 * 60.00262 * 30 15 14 47 47 H 1.09004 * 109.47138 * 180.02562 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5648 -3.2059 -0.5915 12 6 4.2577 -2.9770 1.4354 13 6 5.0221 -4.3024 1.4341 14 6 6.4095 -4.0903 0.8251 15 6 6.2639 -3.5843 -0.6114 16 1 5.7164 -4.3190 -1.2017 17 7 7.5924 -3.3818 -1.1949 18 6 8.2415 -4.4150 -1.7674 19 8 7.7269 -5.5159 -1.7951 20 6 9.5788 -4.2094 -2.3612 21 6 10.1792 -2.9383 -2.3327 22 7 11.3618 -2.7285 -2.8504 23 6 12.0597 -3.7112 -3.4320 24 6 13.3292 -3.4646 -3.9817 25 6 14.0216 -4.4795 -4.5681 26 6 13.4925 -5.7668 -4.6353 27 6 12.2657 -6.0450 -4.1145 28 6 11.5229 -5.0214 -3.5017 29 6 10.2559 -5.2723 -2.9479 30 6 5.4995 -2.2590 -0.6102 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.8049 -2.2421 2.0258 34 1 3.2692 -3.1284 1.8692 35 1 5.1263 -4.6626 2.4576 36 1 4.4745 -5.0371 0.8439 37 1 6.9542 -5.0345 0.8246 38 1 6.9571 -3.3556 1.4154 39 1 8.0030 -2.5033 -1.1728 40 1 9.6513 -2.1159 -1.8729 41 1 13.7545 -2.4727 -3.9393 42 1 14.9970 -4.2837 -4.9884 43 1 14.0627 -6.5537 -5.1065 44 1 11.8657 -7.0465 -4.1720 45 1 9.8199 -6.2598 -2.9805 46 1 6.0471 -1.5242 -0.0200 47 1 5.3954 -1.8986 -1.6337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981350243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:36 Heat of formation + Delta-G solvation = -1.661010 kcal Electronic energy + Delta-G solvation = -27983.246540 eV Core-core repulsion = 24129.406742 eV Total energy + Delta-G solvation = -3853.839798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.06608 -40.92522 -39.36821 -37.92182 -36.39080 -34.92171 -34.51944 -33.27952 -32.05833 -31.08543 -30.60356 -29.61724 -25.90202 -25.35489 -25.12019 -23.37222 -23.12677 -22.80153 -21.67097 -21.08848 -19.81812 -19.15462 -18.83947 -18.26820 -17.18554 -16.92490 -16.42356 -16.30029 -15.94268 -15.58866 -15.38961 -15.33907 -15.27053 -15.04744 -14.85906 -14.77827 -14.51376 -14.38671 -14.13475 -13.75930 -13.49597 -13.02291 -12.88671 -12.79330 -12.75187 -12.45132 -12.35696 -12.17564 -12.03715 -11.79789 -11.68341 -11.64266 -11.60678 -11.43785 -11.15353 -10.90803 -10.55280 -10.18484 -9.84565 -9.32317 -9.29413 -8.00059 -5.33667 -0.84632 -0.44450 0.81573 1.39217 1.43621 1.48644 1.50856 1.97115 2.19737 2.50768 3.03959 3.12766 3.30817 3.45478 3.51150 3.54840 3.67452 3.77207 3.84961 3.93074 4.02204 4.13290 4.21044 4.27893 4.31712 4.37070 4.42037 4.51362 4.56980 4.64478 4.69102 4.75910 4.79354 4.92896 4.97558 5.03460 5.11267 5.15883 5.20949 5.32470 5.35546 5.38602 5.41833 5.45219 5.50444 5.62312 5.80213 5.82418 6.23860 6.43634 6.73231 7.09587 7.10542 7.86012 8.06408 9.21582 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.002101 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.223294 B =13322.314878 C =14236.765216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.246 1.246 7 C -0.227 4.227 8 H 0.052 0.948 9 N -0.749 5.749 10 C 0.180 3.820 11 H 0.036 0.964 12 C -0.128 4.128 13 C -0.107 4.107 14 C -0.116 4.116 15 C 0.158 3.842 16 H 0.071 0.929 17 N -0.704 5.704 18 C 0.567 3.433 19 O -0.572 6.572 20 C -0.206 4.206 21 C 0.161 3.839 22 N -0.495 5.495 23 C 0.119 3.881 24 C -0.120 4.120 25 C -0.079 4.079 26 C -0.116 4.116 27 C -0.094 4.094 28 C -0.128 4.128 29 C 0.011 3.989 30 C -0.121 4.121 31 H 0.256 0.744 32 H 0.367 0.633 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.414 0.586 40 H 0.185 0.815 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.157 0.843 46 H 0.087 0.913 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.273 -10.681 -7.120 36.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.260 4.260 3 Si 0.785 3.215 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.170 1.170 7 C -0.358 4.358 8 H 0.070 0.930 9 N -0.392 5.392 10 C 0.071 3.929 11 H 0.054 0.946 12 C -0.168 4.168 13 C -0.146 4.146 14 C -0.155 4.155 15 C 0.053 3.947 16 H 0.089 0.911 17 N -0.355 5.355 18 C 0.355 3.645 19 O -0.452 6.452 20 C -0.211 4.211 21 C -0.013 4.013 22 N -0.202 5.202 23 C -0.002 4.002 24 C -0.138 4.138 25 C -0.098 4.098 26 C -0.133 4.133 27 C -0.112 4.112 28 C -0.130 4.130 29 C -0.016 4.016 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.200 0.800 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.252 0.748 40 H 0.202 0.798 41 H 0.162 0.838 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.171 0.829 45 H 0.174 0.826 46 H 0.106 0.894 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 34.163 -10.710 -7.169 36.513 hybrid contribution -0.919 0.680 0.130 1.151 sum 33.244 -10.030 -7.039 35.430 Atomic orbital electron populations 1.69903 1.07274 1.26594 1.59948 1.25555 0.96151 1.01452 1.02856 0.85362 0.78780 0.79291 0.78034 1.20526 1.22664 1.17030 1.18999 0.82742 0.93232 1.40851 0.92957 1.42723 1.02300 1.03874 1.90331 1.20280 0.91000 0.87018 0.94576 0.94598 1.22090 0.99262 0.97154 0.98344 1.21407 0.95167 0.96685 1.01332 1.21821 0.97348 1.01546 0.94772 1.20801 0.82216 0.97199 0.94502 0.91106 1.45856 1.18851 1.12610 1.58227 1.18167 0.84781 0.84224 0.77341 1.90774 1.68726 1.25641 1.60091 1.20869 0.96511 0.96837 1.06893 1.23366 0.90439 0.95082 0.92456 1.67988 1.07868 1.33904 1.10485 1.19435 0.95717 0.88902 0.96113 1.21077 0.92240 1.01573 0.98914 1.21443 1.00776 0.92108 0.95498 1.21407 0.95408 0.97907 0.98606 1.21409 0.94955 0.98786 0.96092 1.19033 0.95756 0.95701 1.02546 1.22153 0.91517 0.99558 0.88353 1.21955 0.95142 0.96794 1.02082 0.93481 0.79959 0.91771 0.94447 0.90564 0.92694 0.92027 0.90165 0.74836 0.79780 0.83788 0.81905 0.82024 0.82893 0.82561 0.89398 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.63 13.97 21.65 0.30 -63.33 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.96 44.90 27.74 68.60 1.90 46.80 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 7 C -0.23 -12.87 10.41 84.03 0.87 -12.00 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 9 N -0.75 -33.73 4.93 -322.92 -1.59 -35.32 16 10 C 0.18 6.47 2.77 44.99 0.12 6.60 16 11 H 0.04 1.44 8.08 -2.39 -0.02 1.43 16 12 C -0.13 -4.18 5.50 30.60 0.17 -4.01 16 13 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 14 C -0.12 -2.65 5.50 30.59 0.17 -2.48 16 15 C 0.16 3.80 2.46 44.99 0.11 3.91 16 16 H 0.07 2.06 7.57 -2.39 -0.02 2.04 16 17 N -0.70 -13.85 5.03 -445.49 -2.24 -16.09 16 18 C 0.57 13.30 7.74 86.76 0.67 13.97 16 19 O -0.57 -17.58 16.04 -3.91 -0.06 -17.64 16 20 C -0.21 -4.10 5.89 -20.00 -0.12 -4.22 16 21 C 0.16 2.83 10.68 85.43 0.91 3.74 16 22 N -0.49 -10.07 10.30 -187.69 -1.93 -12.00 16 23 C 0.12 2.24 6.61 40.27 0.27 2.50 16 24 C -0.12 -1.64 9.97 22.34 0.22 -1.42 16 25 C -0.08 -0.65 9.94 22.05 0.22 -0.43 16 26 C -0.12 -0.88 9.96 22.05 0.22 -0.66 16 27 C -0.09 -1.06 9.77 22.35 0.22 -0.84 16 28 C -0.13 -2.21 5.74 -21.29 -0.12 -2.33 16 29 C 0.01 0.20 9.46 23.01 0.22 0.42 16 30 C -0.12 -3.20 4.86 30.60 0.15 -3.05 16 31 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.37 15.51 5.66 -92.71 -0.52 14.98 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.41 5.57 6.63 -92.71 -0.61 4.95 16 40 H 0.19 2.06 6.37 -2.91 -0.02 2.04 16 41 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 42 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 43 H 0.16 0.22 8.06 -2.91 -0.02 0.19 16 44 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.16 2.72 7.70 -2.91 -0.02 2.70 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -77.44 383.17 1.13 -76.31 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.20 Total: 27.76 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.95 Total: -6.50 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -5.46 Total: -126.74 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.06 Total: -17.64 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Total: -77.44 1.13 -76.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981350243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.654 kcal (2) G-P(sol) polarization free energy of solvation -77.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds