Wall clock time and date at job start Tue Mar 31 2020 23:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00257 * 2 1 4 4 H 1.48505 * 109.46841 * 269.99825 * 3 2 1 5 5 H 1.48499 * 109.46879 * 29.99118 * 3 2 1 6 6 H 1.48493 * 109.47285 * 149.99906 * 3 2 1 7 7 C 1.38812 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00436 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00023 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47311 * 325.00493 * 10 9 7 12 12 C 1.53001 * 109.46775 * 85.00050 * 10 9 7 13 13 C 1.53006 * 109.47065 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47344 * 300.00232 * 13 12 10 15 15 C 1.53008 * 109.46796 * 59.99698 * 14 13 12 16 16 H 1.08994 * 109.47203 * 60.00310 * 15 14 13 17 17 N 1.46505 * 109.46864 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99724 * 275.00347 * 17 15 14 19 19 O 1.21563 * 120.00284 * 359.97438 * 18 17 15 20 20 C 1.47759 * 119.99444 * 179.72311 * 18 17 15 21 21 C 1.40596 * 120.27244 * 0.02562 * 20 18 17 22 22 N 1.30791 * 121.53766 * 179.68490 * 21 20 18 23 23 C 1.33825 * 121.72317 * 0.59547 * 22 21 20 24 24 C 1.40514 * 120.81646 * 179.63396 * 23 22 21 25 25 C 1.36131 * 119.81691 * 180.02562 * 24 23 22 26 26 C 1.39338 * 121.08519 * 0.04622 * 25 24 23 27 27 C 1.36138 * 120.83629 * 359.97438 * 26 25 24 28 28 C 1.40545 * 119.62170 * 359.97438 * 27 26 25 29 29 C 1.39016 * 120.26208 * 180.27178 * 20 18 17 30 30 C 1.52995 * 109.47295 * 299.99943 * 15 14 13 31 31 H 0.97001 * 119.99623 * 0.02562 * 1 2 3 32 32 H 0.97005 * 120.00112 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.46839 * 60.00154 * 12 10 9 34 34 H 1.09003 * 109.47371 * 300.00120 * 12 10 9 35 35 H 1.09001 * 109.47081 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.46595 * 60.00498 * 13 12 10 37 37 H 1.09002 * 109.47122 * 300.00150 * 14 13 12 38 38 H 1.08991 * 109.46988 * 179.97438 * 14 13 12 39 39 H 0.97000 * 119.99792 * 94.99915 * 17 15 14 40 40 H 1.08009 * 119.22898 * 359.96723 * 21 20 18 41 41 H 1.08006 * 120.09366 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.45762 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.58511 * 179.97438 * 26 25 24 44 44 H 1.08005 * 120.19391 * 179.97438 * 27 26 25 45 45 H 1.07992 * 121.02223 * 359.97438 * 29 20 18 46 46 H 1.09001 * 109.46956 * 180.02562 * 30 15 14 47 47 H 1.09002 * 109.47452 * 300.00056 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9688 -3.5506 -0.5888 12 6 2.4218 -4.0356 1.4376 13 6 3.1863 -5.3610 1.4377 14 6 2.3086 -6.4561 0.8283 15 6 1.9448 -6.0772 -0.6088 16 1 2.8554 -5.9714 -1.1983 17 7 1.1038 -7.1254 -1.1922 18 6 1.6725 -8.2082 -1.7585 19 8 2.8832 -8.3148 -1.7857 20 6 0.8242 -9.2683 -2.3414 21 6 -0.5767 -9.1531 -2.3089 22 7 -1.3509 -10.0735 -2.8227 23 6 -0.8505 -11.1754 -3.3941 24 6 -1.7003 -12.1559 -3.9335 25 6 -1.1694 -13.2691 -4.5096 26 6 0.2097 -13.4575 -4.5747 27 6 1.0655 -12.5306 -4.0630 28 6 0.5524 -11.3684 -3.4618 29 6 1.4048 -10.3901 -2.9220 30 6 1.1803 -4.7519 -0.6089 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0002 33 1 1.5111 -4.1418 2.0270 34 1 3.0468 -3.2552 1.8719 35 1 3.4450 -5.6311 2.4615 36 1 4.0969 -5.2552 0.8483 37 1 1.3978 -6.5618 1.4178 38 1 2.8533 -7.4001 0.8280 39 1 0.1378 -7.0402 -1.1707 40 1 -1.0238 -8.2820 -1.8529 41 1 -2.7718 -12.0266 -3.8911 42 1 -1.8279 -14.0189 -4.9227 43 1 0.6047 -14.3501 -5.0369 44 1 2.1326 -12.6874 -4.1187 45 1 2.4778 -10.5061 -2.9575 46 1 0.9208 -4.4822 -1.6326 47 1 0.2696 -4.8576 -0.0194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981350246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:49 Heat of formation + Delta-G solvation = -4.334300 kcal Electronic energy + Delta-G solvation = -27908.929881 eV Core-core repulsion = 24054.974160 eV Total energy + Delta-G solvation = -3853.955721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06313 -40.91190 -39.31155 -37.91691 -36.28777 -34.90762 -34.51706 -32.95693 -32.04898 -31.08109 -30.43328 -29.34051 -25.92710 -25.61260 -25.12351 -23.32115 -23.12217 -22.85749 -21.67971 -20.94339 -19.53415 -19.02231 -18.78623 -18.24898 -17.21065 -16.91014 -16.39611 -16.25931 -15.88540 -15.57923 -15.45461 -15.32159 -15.20988 -15.06419 -14.94813 -14.71123 -14.46711 -14.20101 -14.10296 -13.58751 -13.39993 -12.89617 -12.83672 -12.78835 -12.74712 -12.44723 -12.25753 -12.14711 -12.03704 -11.96320 -11.66471 -11.62394 -11.59978 -11.38995 -11.12430 -10.86624 -10.54855 -10.17654 -9.84307 -9.31957 -8.98708 -7.93159 -5.20721 -0.84284 -0.44404 0.81981 1.47693 1.48604 1.48767 1.56964 1.98223 2.19829 2.57150 3.04226 3.12812 3.40126 3.51498 3.55148 3.63440 3.67713 3.77645 3.87182 3.94557 4.05006 4.20189 4.25595 4.32007 4.32716 4.41224 4.44425 4.53812 4.58888 4.67150 4.69470 4.77296 4.79908 4.93186 5.02625 5.03917 5.11766 5.18057 5.23532 5.33003 5.36265 5.39341 5.43107 5.45710 5.51575 5.54510 5.66917 5.82927 6.29631 6.43508 6.73501 7.08767 7.35996 8.12120 8.35581 9.30126 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.001949 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.915715 B =14359.395895 C =15008.270932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.968 3.032 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.236 4.236 8 H 0.073 0.927 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.037 0.963 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.159 3.841 16 H 0.073 0.927 17 N -0.706 5.706 18 C 0.568 3.432 19 O -0.571 6.571 20 C -0.206 4.206 21 C 0.160 3.840 22 N -0.495 5.495 23 C 0.118 3.882 24 C -0.120 4.120 25 C -0.078 4.078 26 C -0.115 4.115 27 C -0.093 4.093 28 C -0.128 4.128 29 C 0.012 3.988 30 C -0.116 4.116 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.412 0.588 40 H 0.183 0.817 41 H 0.144 0.856 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.062 0.938 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -31.289 -7.070 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.798 3.202 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.055 0.945 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.091 0.909 17 N -0.357 5.357 18 C 0.355 3.645 19 O -0.452 6.452 20 C -0.212 4.212 21 C -0.014 4.014 22 N -0.203 5.203 23 C -0.002 4.002 24 C -0.139 4.139 25 C -0.098 4.098 26 C -0.133 4.133 27 C -0.112 4.112 28 C -0.130 4.130 29 C -0.015 4.015 30 C -0.155 4.155 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.250 0.750 40 H 0.199 0.801 41 H 0.162 0.838 42 H 0.181 0.819 43 H 0.181 0.819 44 H 0.172 0.828 45 H 0.176 0.824 46 H 0.081 0.919 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.916 -31.214 -7.117 32.028 hybrid contribution 0.413 1.573 0.135 1.632 sum -0.504 -29.641 -6.982 30.456 Atomic orbital electron populations 1.69804 1.06419 1.25892 1.59784 1.25498 0.96375 1.00854 1.04100 0.85211 0.77754 0.79925 0.77326 1.21618 1.22251 1.19606 1.19586 0.91329 0.85307 1.40573 0.90941 1.42575 1.05457 1.00782 1.88686 1.20312 0.93860 0.84715 0.94313 0.94507 1.22102 0.99674 0.96412 0.98509 1.21410 0.98089 0.93661 1.01303 1.21822 1.00580 0.98410 0.94715 1.20816 0.93716 0.85518 0.94502 0.90886 1.45906 1.11185 1.20195 1.58378 1.18164 0.87179 0.81844 0.77294 1.90763 1.15434 1.79051 1.59934 1.20867 0.95457 0.97790 1.07045 1.23340 0.88606 0.97042 0.92443 1.67986 1.39586 1.02166 1.10562 1.19451 0.91341 0.93262 0.96153 1.21073 1.00485 0.93251 0.99040 1.21443 0.96209 0.96692 0.95427 1.21409 0.93190 1.00121 0.98575 1.21411 1.01909 0.91756 0.96096 1.19039 0.93697 0.97627 1.02646 1.22156 1.01315 0.89719 0.88278 1.21894 0.99225 0.92912 1.01495 0.94120 0.79419 0.92769 0.94019 0.90578 0.92253 0.90662 0.91867 0.74994 0.80056 0.83847 0.81871 0.81943 0.82796 0.82420 0.91943 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.24 -13.04 9.93 84.03 0.83 -12.20 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -36.31 5.12 -322.93 -1.65 -37.96 16 10 C 0.18 6.76 2.77 44.99 0.12 6.88 16 11 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 12 C -0.13 -4.32 5.50 30.60 0.17 -4.15 16 13 C -0.11 -2.83 5.92 30.60 0.18 -2.65 16 14 C -0.12 -2.87 5.50 30.60 0.17 -2.70 16 15 C 0.16 4.19 2.45 44.99 0.11 4.30 16 16 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 17 N -0.71 -15.55 5.03 -445.48 -2.24 -17.79 16 18 C 0.57 14.18 7.74 86.76 0.67 14.85 16 19 O -0.57 -18.10 16.05 -3.91 -0.06 -18.16 16 20 C -0.21 -4.41 5.89 -20.00 -0.12 -4.52 16 21 C 0.16 3.11 10.68 85.42 0.91 4.02 16 22 N -0.50 -10.85 10.30 -187.68 -1.93 -12.78 16 23 C 0.12 2.36 6.61 40.27 0.27 2.63 16 24 C -0.12 -1.76 9.97 22.33 0.22 -1.53 16 25 C -0.08 -0.70 9.94 22.04 0.22 -0.48 16 26 C -0.12 -0.94 9.96 22.05 0.22 -0.72 16 27 C -0.09 -1.10 9.77 22.34 0.22 -0.88 16 28 C -0.13 -2.31 5.74 -21.28 -0.12 -2.43 16 29 C 0.01 0.23 9.46 23.02 0.22 0.45 16 30 C -0.12 -3.52 4.86 30.59 0.15 -3.37 16 31 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.37 19.64 7.80 -92.70 -0.72 18.92 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.41 6.85 6.63 -92.71 -0.61 6.23 16 40 H 0.18 2.49 6.37 -2.91 -0.02 2.48 16 41 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 43 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 45 H 0.16 2.83 7.70 -2.91 -0.02 2.81 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -72.80 386.28 0.99 -71.81 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -0.34 Total: 31.49 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 4.91 Total: -6.40 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.55 Total: -127.12 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.06 Total: -18.16 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.80 0.99 -71.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981350246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.477 kcal (2) G-P(sol) polarization free energy of solvation -72.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds