Wall clock time and date at job start Tue Mar 31 2020 22:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48501 * 109.47085 * 89.99628 * 3 2 1 5 5 H 1.48497 * 109.46789 * 209.99638 * 3 2 1 6 6 H 1.48490 * 109.47245 * 329.99787 * 3 2 1 7 7 C 1.38806 * 120.00103 * 179.71988 * 2 1 3 8 8 H 1.07998 * 120.00378 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47316 * 34.99385 * 10 9 7 12 12 C 1.53000 * 109.47071 * 274.99689 * 10 9 7 13 13 C 1.53003 * 109.47629 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46668 * 59.99860 * 13 12 10 15 15 C 1.53000 * 109.47210 * 300.00397 * 14 13 12 16 16 H 1.09005 * 109.47224 * 299.99833 * 15 14 13 17 17 N 1.46500 * 109.47055 * 180.02562 * 15 14 13 18 18 C 1.34775 * 120.00313 * 84.99509 * 17 15 14 19 19 O 1.21554 * 119.99852 * 0.02562 * 18 17 15 20 20 C 1.47882 * 120.00234 * 179.97438 * 18 17 15 21 21 C 1.40574 * 119.70492 * 359.73128 * 20 18 17 22 22 C 1.35810 * 120.73279 * 179.72395 * 21 20 18 23 23 C 1.40551 * 119.98282 * 0.56699 * 22 21 20 24 24 C 1.40819 * 121.12755 * 179.71510 * 23 22 21 25 25 C 1.36552 * 118.19720 * 179.97438 * 24 23 22 26 26 C 1.39424 * 119.93924 * 0.02562 * 25 24 23 27 27 N 1.31021 * 121.71323 * 359.97225 * 26 25 24 28 28 C 1.33746 * 121.34700 * 0.04589 * 27 26 25 29 29 C 1.38410 * 119.70628 * 179.97438 * 20 18 17 30 30 C 1.52994 * 109.47239 * 60.00032 * 15 14 13 31 31 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 32 32 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47224 * 300.00151 * 12 10 9 34 34 H 1.09008 * 109.47230 * 59.99893 * 12 10 9 35 35 H 1.08991 * 109.47396 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46747 * 300.00587 * 13 12 10 37 37 H 1.09005 * 109.46891 * 60.00434 * 14 13 12 38 38 H 1.09003 * 109.46767 * 180.02562 * 14 13 12 39 39 H 0.97001 * 120.00019 * 264.99972 * 17 15 14 40 40 H 1.08001 * 119.62850 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.01100 * 180.28132 * 22 21 20 42 42 H 1.07997 * 120.90332 * 359.97438 * 24 23 22 43 43 H 1.08001 * 120.03331 * 180.02562 * 25 24 23 44 44 H 1.07995 * 119.14314 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.23098 * 359.96918 * 29 20 18 46 46 H 1.09003 * 109.46997 * 179.97438 * 30 15 14 47 47 H 1.08999 * 109.47272 * 60.00228 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7000 7 6 2.0103 -1.2021 0.0059 8 1 1.4704 -2.1374 0.0100 9 7 3.3796 -1.2020 0.0064 10 6 4.1122 -2.4707 0.0120 11 1 3.5651 -3.2088 -0.5744 12 6 4.2579 -2.9691 1.4512 13 6 5.0224 -4.2944 1.4572 14 6 6.4098 -4.0855 0.8469 15 6 6.2641 -3.5871 -0.5922 16 1 5.7166 -4.3250 -1.1787 17 7 7.5926 -3.3876 -1.1767 18 6 8.2443 -4.4249 -1.7387 19 8 7.7296 -5.5259 -1.7609 20 6 9.5850 -4.2234 -2.3292 21 6 10.1716 -2.9461 -2.3061 22 6 11.4042 -2.7387 -2.8373 23 6 12.1025 -3.8052 -3.4291 24 6 13.3792 -3.6160 -3.9925 25 6 14.0040 -4.6939 -4.5513 26 6 13.3757 -5.9386 -4.5533 27 7 12.1878 -6.1113 -4.0283 28 6 11.5217 -5.0972 -3.4656 29 6 10.2490 -5.2931 -2.9042 30 6 5.4996 -2.2619 -0.5981 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3620 0.0023 33 1 4.8050 -2.2310 2.0378 34 1 3.2694 -3.1184 1.8859 35 1 5.1265 -4.6492 2.4825 36 1 4.4749 -5.0323 0.8708 37 1 6.9573 -3.3476 1.4334 38 1 6.9543 -5.0298 0.8508 39 1 8.0032 -2.5090 -1.1593 40 1 9.6381 -2.1217 -1.8565 41 1 11.8457 -1.7534 -2.8092 42 1 13.8513 -2.6448 -3.9828 43 1 14.9839 -4.5825 -4.9914 44 1 13.8818 -6.7825 -4.9984 45 1 9.7915 -6.2712 -2.9219 46 1 5.3963 -1.9066 -1.6234 47 1 6.0471 -1.5239 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981392090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:14 Heat of formation + Delta-G solvation = -1.847420 kcal Electronic energy + Delta-G solvation = -27974.110666 eV Core-core repulsion = 24120.262785 eV Total energy + Delta-G solvation = -3853.847882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.97705 -41.04873 -39.45253 -37.74235 -36.39630 -34.92166 -34.48492 -33.28337 -32.02540 -31.05279 -30.63947 -29.65277 -26.04583 -25.37244 -24.88151 -23.52799 -23.13987 -22.67692 -21.70538 -21.10583 -19.89346 -19.21201 -18.53533 -17.96284 -17.26613 -17.13423 -16.45968 -16.27056 -15.99132 -15.50188 -15.41893 -15.35212 -15.11229 -15.08411 -14.84765 -14.78981 -14.58235 -14.46820 -13.92984 -13.77587 -13.50303 -13.03193 -12.95962 -12.88338 -12.73263 -12.55208 -12.38646 -12.17245 -11.99001 -11.81034 -11.70982 -11.57690 -11.55713 -11.45256 -11.01678 -10.89917 -10.50429 -10.19071 -9.82760 -9.34675 -9.29876 -7.99844 -5.33920 -0.79406 -0.37635 0.85203 1.39077 1.43693 1.44445 1.51610 1.96380 2.24442 2.51196 3.07549 3.25668 3.31218 3.44224 3.51352 3.60677 3.81721 3.83575 3.93568 4.00927 4.03807 4.05876 4.10592 4.26032 4.30790 4.36410 4.50041 4.55620 4.56867 4.63671 4.72643 4.74961 4.86465 4.91733 4.97430 5.07903 5.10043 5.13393 5.16769 5.19433 5.30598 5.34587 5.39588 5.49359 5.51524 5.61404 5.76662 5.79917 6.23771 6.46419 6.89907 7.10435 7.11777 7.85347 8.06616 9.21811 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.002090 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.679217 B =13395.256808 C =14289.182917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.070 4.070 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.244 1.244 6 H -0.300 1.300 7 C -0.229 4.229 8 H 0.051 0.949 9 N -0.748 5.748 10 C 0.179 3.821 11 H 0.033 0.967 12 C -0.128 4.128 13 C -0.108 4.108 14 C -0.116 4.116 15 C 0.156 3.844 16 H 0.066 0.934 17 N -0.701 5.701 18 C 0.555 3.445 19 O -0.577 6.577 20 C -0.120 4.120 21 C -0.098 4.098 22 C -0.084 4.084 23 C -0.102 4.102 24 C -0.058 4.058 25 C -0.163 4.163 26 C 0.126 3.874 27 N -0.513 5.513 28 C 0.092 3.908 29 C -0.051 4.051 30 C -0.119 4.119 31 H 0.257 0.743 32 H 0.368 0.632 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.416 0.584 40 H 0.162 0.838 41 H 0.177 0.823 42 H 0.180 0.820 43 H 0.178 0.822 44 H 0.186 0.814 45 H 0.123 0.877 46 H 0.069 0.931 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.635 -4.095 -6.578 37.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.261 4.261 3 Si 0.787 3.213 4 H -0.204 1.204 5 H -0.169 1.169 6 H -0.227 1.227 7 C -0.360 4.360 8 H 0.069 0.931 9 N -0.391 5.391 10 C 0.071 3.929 11 H 0.051 0.949 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.155 4.155 15 C 0.051 3.949 16 H 0.084 0.916 17 N -0.352 5.352 18 C 0.343 3.657 19 O -0.458 6.458 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.102 4.102 23 C -0.104 4.104 24 C -0.084 4.084 25 C -0.183 4.183 26 C -0.047 4.047 27 N -0.222 5.222 28 C -0.028 4.028 29 C -0.071 4.071 30 C -0.157 4.157 31 H 0.065 0.935 32 H 0.201 0.799 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.254 0.746 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.197 0.803 43 H 0.195 0.805 44 H 0.203 0.797 45 H 0.141 0.859 46 H 0.088 0.912 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 35.532 -5.735 -6.553 36.584 hybrid contribution -0.254 1.553 0.026 1.574 sum 35.278 -4.181 -6.527 36.120 Atomic orbital electron populations 1.69909 1.07340 1.26643 1.59885 1.25586 0.96175 1.01573 1.02764 0.85328 0.78785 0.79072 0.78091 1.20418 1.16858 1.22693 1.18991 0.82762 0.93218 1.40997 0.93143 1.42691 1.02264 1.03827 1.90351 1.20267 0.91009 0.87044 0.94571 0.94896 1.22082 0.99271 0.97092 0.98308 1.21412 0.95156 0.96788 1.01299 1.21822 0.97371 1.01495 0.94781 1.20802 0.82376 0.97298 0.94423 0.91603 1.45817 1.18600 1.12408 1.58413 1.18553 0.85461 0.84161 0.77498 1.90776 1.69059 1.26152 1.59819 1.19845 0.94374 0.95630 1.02668 1.21237 0.96215 0.95132 0.99015 1.21338 0.93868 0.99426 0.95589 1.19307 0.97027 0.93961 1.00130 1.22014 0.91754 1.01642 0.92957 1.22414 1.03016 0.92831 0.99995 1.23664 0.89563 0.98866 0.92617 1.68014 1.10285 1.33443 1.10493 1.18879 0.94731 0.90421 0.98765 1.21168 0.92568 0.99109 0.94233 1.21930 0.95089 0.96631 1.02067 0.93466 0.79869 0.91453 0.94437 0.90500 0.92971 0.89845 0.92407 0.74561 0.82105 0.80538 0.80314 0.80453 0.79705 0.85909 0.91202 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.69 13.97 21.65 0.30 -63.38 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.96 44.49 27.73 68.60 1.90 46.39 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.24 -9.86 6.52 99.48 0.65 -9.21 16 6 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 7 C -0.23 -12.98 10.41 84.03 0.87 -12.11 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 N -0.75 -33.65 4.93 -322.96 -1.59 -35.24 16 10 C 0.18 6.54 2.77 44.99 0.12 6.66 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 C -0.13 -4.19 5.50 30.60 0.17 -4.02 16 13 C -0.11 -2.89 5.92 30.60 0.18 -2.71 16 14 C -0.12 -2.77 5.49 30.59 0.17 -2.60 16 15 C 0.16 3.94 2.45 44.99 0.11 4.05 16 16 H 0.07 2.05 7.57 -2.38 -0.02 2.03 16 17 N -0.70 -14.42 5.03 -445.37 -2.24 -16.66 16 18 C 0.56 14.34 7.73 86.80 0.67 15.01 16 19 O -0.58 -20.12 15.96 -3.88 -0.06 -20.18 16 20 C -0.12 -2.55 5.87 -20.11 -0.12 -2.67 16 21 C -0.10 -1.26 9.44 22.28 0.21 -1.05 16 22 C -0.08 -0.85 9.74 22.27 0.22 -0.63 16 23 C -0.10 -1.46 5.75 -21.23 -0.12 -1.58 16 24 C -0.06 -0.44 9.88 22.51 0.22 -0.22 16 25 C -0.16 -1.09 10.03 22.16 0.22 -0.86 16 26 C 0.13 1.54 11.15 85.10 0.95 2.49 16 27 N -0.51 -10.94 10.34 -188.65 -1.95 -12.89 16 28 C 0.09 1.98 6.60 40.25 0.27 2.24 16 29 C -0.05 -1.25 9.56 22.85 0.22 -1.03 16 30 C -0.12 -3.16 4.86 30.59 0.15 -3.01 16 31 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 32 H 0.37 15.38 5.66 -92.71 -0.52 14.86 16 33 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.42 5.49 6.59 -92.71 -0.61 4.88 16 40 H 0.16 1.03 6.34 -2.91 -0.02 1.01 16 41 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.18 -0.05 8.06 -2.91 -0.02 -0.08 16 43 H 0.18 -0.20 8.06 -2.91 -0.02 -0.23 16 44 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.12 3.53 7.60 -2.91 -0.02 3.50 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -82.81 382.93 1.15 -81.66 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.19 Total: 25.99 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 4.98 Total: -5.69 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -5.48 Total: -128.16 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.06 Total: -20.18 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Total: -82.81 1.15 -81.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981392090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.809 kcal (2) G-P(sol) polarization free energy of solvation -82.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds