Wall clock time and date at job start Tue Mar 31 2020 23:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 17 17 N 1.46495 * 109.47046 * 299.99692 * 15 14 13 18 18 C 1.34776 * 120.00412 * 275.00167 * 17 15 14 19 19 O 1.21510 * 119.99793 * 0.02562 * 18 17 15 20 20 C 1.48273 * 120.00318 * 179.97438 * 18 17 15 21 21 C 1.40275 * 119.23965 * 179.73457 * 20 18 17 22 22 C 1.36504 * 119.81545 * 179.70105 * 21 20 18 23 23 C 1.40757 * 118.24021 * 0.57630 * 22 21 20 24 24 C 1.40413 * 121.26829 * 179.66679 * 23 22 21 25 25 C 1.36143 * 119.64869 * 180.02562 * 24 23 22 26 26 C 1.39428 * 120.90870 * 359.97438 * 25 24 23 27 27 C 1.35991 * 121.09225 * 359.97438 * 26 25 24 28 28 C 1.40822 * 119.73711 * 0.04508 * 27 26 25 29 29 N 1.31881 * 119.23471 * 0.02562 * 20 18 17 30 30 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 33 33 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 34 34 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 35 35 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47000 * 300.00691 * 13 12 10 37 37 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 38 38 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 39 39 H 0.97000 * 119.99698 * 95.00146 * 17 15 14 40 40 H 1.08001 * 120.09378 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.88132 * 180.26337 * 22 21 20 42 42 H 1.08003 * 120.17930 * 359.97438 * 24 23 22 43 43 H 1.08001 * 119.54424 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.45394 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.13422 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47405 * 299.99602 * 30 10 9 47 47 H 1.09002 * 109.47452 * 59.99785 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 6 3.1873 -5.3528 -1.4594 14 6 2.3106 -6.4516 -0.8553 15 6 1.9467 -6.0802 0.5837 16 1 1.3225 -6.8633 1.0142 17 7 3.1708 -5.9411 1.3765 18 6 3.7378 -7.0277 1.9371 19 8 3.2340 -8.1228 1.7845 20 6 4.9770 -6.8869 2.7390 21 6 5.5505 -8.0277 3.3199 22 6 6.6947 -7.9125 4.0554 23 6 7.2574 -6.6323 4.2156 24 6 8.4292 -6.4398 4.9650 25 6 8.9447 -5.1869 5.0989 26 6 8.3254 -4.0899 4.5013 27 6 7.1901 -4.2380 3.7675 28 6 6.6251 -5.5177 3.6055 29 7 5.5113 -5.6912 2.8944 30 6 1.1807 -4.7552 0.5904 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0068 33 1 1.5111 -4.1311 -2.0425 34 1 3.0467 -3.2455 -1.8827 35 1 3.4468 -5.6170 -2.4846 36 1 4.0980 -5.2492 -0.8695 37 1 1.3998 -6.5551 -1.4451 38 1 2.8557 -7.3954 -0.8606 39 1 3.5731 -5.0669 1.4979 40 1 5.0906 -8.9951 3.1819 41 1 7.1532 -8.7799 4.5068 42 1 8.9184 -7.2811 5.4333 43 1 9.8463 -5.0408 5.6753 44 1 8.7545 -3.1063 4.6231 45 1 6.7235 -3.3776 3.3110 46 1 0.9216 -4.4908 1.6156 47 1 0.2700 -4.8584 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981478829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:02 Heat of formation + Delta-G solvation = 0.888208 kcal Electronic energy + Delta-G solvation = -28884.703017 eV Core-core repulsion = 25030.973762 eV Total energy + Delta-G solvation = -3853.729256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09785 -41.04655 -39.33946 -37.82480 -36.19222 -34.83331 -34.26197 -32.94638 -31.92385 -31.15038 -30.58136 -29.50345 -26.34478 -25.68190 -24.72082 -23.41720 -23.09240 -22.70970 -22.26502 -20.16863 -19.56853 -19.01741 -18.90158 -18.14509 -17.10049 -16.68220 -16.49134 -16.34555 -16.08953 -15.64048 -15.47322 -15.35318 -15.23912 -14.98122 -14.89161 -14.74160 -14.27064 -14.04931 -13.91949 -13.56027 -13.12725 -13.06801 -12.90560 -12.83276 -12.70437 -12.62770 -12.45841 -12.22363 -12.03741 -11.97553 -11.64810 -11.63539 -11.50592 -11.39153 -11.03179 -10.86283 -10.60581 -10.13403 -9.81374 -9.28747 -8.99162 -7.93205 -5.21032 -0.85034 -0.35121 0.91368 1.37607 1.46876 1.47110 1.57090 2.02323 2.21192 2.56247 2.94690 3.07880 3.40011 3.55096 3.61233 3.70042 3.83345 3.85303 3.89472 3.90405 4.15362 4.23883 4.27721 4.28450 4.33486 4.37365 4.50403 4.53979 4.63520 4.69588 4.77222 4.79053 4.89030 4.94496 5.02605 5.06212 5.08269 5.15903 5.20885 5.33982 5.36926 5.43614 5.44024 5.49046 5.49753 5.53840 5.63353 5.85478 6.29117 6.34179 6.67195 7.05685 7.35449 8.11227 8.34858 9.30460 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009518 B = 0.003371 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.230720 B = 8303.764717 C =10684.485864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.036 0.964 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.120 4.120 15 C 0.154 3.846 16 H 0.091 0.909 17 N -0.695 5.695 18 C 0.567 3.433 19 O -0.559 6.559 20 C 0.095 3.905 21 C -0.141 4.141 22 C -0.046 4.046 23 C -0.101 4.101 24 C -0.099 4.099 25 C -0.104 4.104 26 C -0.094 4.094 27 C -0.115 4.115 28 C 0.097 3.903 29 N -0.466 5.466 30 C -0.121 4.121 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.411 0.589 40 H 0.157 0.843 41 H 0.188 0.812 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.155 0.845 45 H 0.129 0.871 46 H 0.059 0.941 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.288 -17.965 9.904 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.069 3.931 11 H 0.054 0.946 12 C -0.166 4.166 13 C -0.144 4.144 14 C -0.158 4.158 15 C 0.050 3.950 16 H 0.109 0.891 17 N -0.346 5.346 18 C 0.352 3.648 19 O -0.438 6.438 20 C -0.058 4.058 21 C -0.161 4.161 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.134 4.134 28 C -0.027 4.027 29 N -0.178 5.178 30 C -0.160 4.160 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.248 0.752 40 H 0.175 0.825 41 H 0.205 0.795 42 H 0.186 0.814 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.147 0.853 46 H 0.078 0.922 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.697 -17.805 9.418 27.483 hybrid contribution -0.027 1.186 0.085 1.189 sum 18.671 -16.619 9.504 26.741 Atomic orbital electron populations 1.69817 1.06507 1.25806 1.59892 1.25495 0.96328 1.00853 1.04096 0.85152 0.78306 0.80233 0.76597 1.19115 1.22163 1.22152 1.19609 0.91273 0.85260 1.40412 0.90944 1.42605 1.05426 1.00865 1.88620 1.20338 0.93791 0.84851 0.94129 0.94557 1.22087 0.99594 0.96271 0.98638 1.21413 0.98007 0.94053 1.00924 1.21857 1.01138 0.98191 0.94654 1.21007 0.84948 0.97383 0.91692 0.89136 1.46117 1.27196 1.10673 1.50575 1.18182 0.83367 0.84302 0.78909 1.90727 1.64085 1.26494 1.62495 1.21332 0.95712 0.90477 0.98273 1.21856 0.97014 0.99562 0.97689 1.21902 0.93293 0.97402 0.94566 1.19316 0.97828 0.93940 0.99239 1.21424 0.93483 0.99582 0.97190 1.21469 1.00651 0.91856 0.98230 1.21332 0.93920 1.01273 0.94857 1.21068 0.97134 0.95022 1.00136 1.19235 0.91897 0.95259 0.96266 1.67765 1.10585 1.24614 1.14861 1.21984 0.99172 0.93353 1.01483 0.94143 0.79522 0.92742 0.94196 0.91026 0.93023 0.89497 0.91635 0.75172 0.82535 0.79527 0.81439 0.81784 0.82729 0.85333 0.92231 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.23 -13.01 9.93 84.04 0.83 -12.18 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -37.04 5.12 -322.93 -1.65 -38.69 16 10 C 0.18 6.95 2.60 44.99 0.12 7.07 16 11 H 0.04 1.49 6.44 -2.39 -0.02 1.47 16 12 C -0.13 -4.47 5.50 30.60 0.17 -4.30 16 13 C -0.11 -3.02 5.77 30.60 0.18 -2.85 16 14 C -0.12 -3.18 5.60 30.59 0.17 -3.01 16 15 C 0.15 4.46 2.78 45.01 0.13 4.59 16 16 H 0.09 2.60 7.58 -2.39 -0.02 2.58 16 17 N -0.69 -20.96 4.22 -444.92 -1.88 -22.84 16 18 C 0.57 17.37 7.78 86.91 0.68 18.05 16 19 O -0.56 -18.77 15.94 -3.75 -0.06 -18.83 16 20 C 0.09 2.63 6.75 42.30 0.29 2.92 16 21 C -0.14 -3.00 9.54 22.36 0.21 -2.79 16 22 C -0.05 -0.72 9.88 22.48 0.22 -0.49 16 23 C -0.10 -1.85 5.75 -21.22 -0.12 -1.97 16 24 C -0.10 -1.11 9.77 22.31 0.22 -0.89 16 25 C -0.10 -1.07 9.96 22.07 0.22 -0.85 16 26 C -0.09 -1.35 9.94 22.03 0.22 -1.13 16 27 C -0.11 -2.48 9.99 22.38 0.22 -2.25 16 28 C 0.10 2.40 6.61 40.47 0.27 2.66 16 29 N -0.47 -13.47 9.47 -177.76 -1.68 -15.16 16 30 C -0.12 -4.00 5.08 30.61 0.16 -3.84 16 31 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 32 H 0.37 20.14 7.80 -92.71 -0.72 19.42 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.53 7.60 -2.39 -0.02 1.52 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.41 13.07 6.17 -92.71 -0.57 12.49 16 40 H 0.16 3.00 7.60 -2.91 -0.02 2.98 16 41 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 44 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 45 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -72.14 384.01 1.38 -70.76 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.29 Total: 40.70 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 4.64 Total: -5.17 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -4.93 Total: -136.01 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.06 Total: -18.83 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -72.14 1.38 -70.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981478829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.649 kcal (2) G-P(sol) polarization free energy of solvation -72.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds