Wall clock time and date at job start Tue Mar 31 2020 23:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48505 * 109.47214 * 269.99696 * 3 2 1 5 5 H 1.48499 * 109.47409 * 29.99881 * 3 2 1 6 6 H 1.48500 * 109.47084 * 149.99996 * 3 2 1 7 7 C 1.38809 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99606 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99999 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47158 * 324.99763 * 10 9 7 12 12 C 1.52995 * 109.46992 * 85.00020 * 10 9 7 13 13 C 1.53004 * 109.47210 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47134 * 300.00015 * 13 12 10 15 15 C 1.53005 * 109.46956 * 59.99942 * 14 13 12 16 16 H 1.08999 * 109.47472 * 60.00108 * 15 14 13 17 17 N 1.46500 * 109.46855 * 180.02562 * 15 14 13 18 18 C 1.34782 * 119.99480 * 274.99548 * 17 15 14 19 19 O 1.21502 * 120.00128 * 0.02562 * 18 17 15 20 20 C 1.48282 * 119.99850 * 180.02562 * 18 17 15 21 21 C 1.40278 * 119.23874 * 180.02562 * 20 18 17 22 22 C 1.36502 * 119.81420 * 180.29861 * 21 20 18 23 23 C 1.40761 * 118.24165 * 359.46093 * 22 21 20 24 24 C 1.40419 * 121.27729 * 180.24030 * 23 22 21 25 25 C 1.36132 * 119.65074 * 180.32448 * 24 23 22 26 26 C 1.39430 * 120.91207 * 359.94953 * 25 24 23 27 27 C 1.35992 * 121.08878 * 0.04856 * 26 25 24 28 28 C 1.40822 * 119.73394 * 359.97438 * 27 26 25 29 29 N 1.31881 * 119.23550 * 0.02562 * 20 18 17 30 30 C 1.53000 * 109.47176 * 204.99929 * 10 9 7 31 31 H 0.97005 * 119.99919 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99927 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47379 * 59.99878 * 12 10 9 34 34 H 1.08998 * 109.47246 * 299.99582 * 12 10 9 35 35 H 1.08994 * 109.47570 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.46983 * 59.99716 * 13 12 10 37 37 H 1.08994 * 109.47036 * 300.00183 * 14 13 12 38 38 H 1.09000 * 109.47266 * 179.97438 * 14 13 12 39 39 H 0.96992 * 120.00765 * 95.00186 * 17 15 14 40 40 H 1.08002 * 120.08978 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.87533 * 179.69590 * 22 21 20 42 42 H 1.08004 * 120.17667 * 0.27670 * 24 23 22 43 43 H 1.07996 * 119.54241 * 179.97438 * 25 24 23 44 44 H 1.08007 * 119.45438 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.13363 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.47005 * 59.99694 * 30 10 9 47 47 H 1.09008 * 109.47065 * 300.00246 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5506 -0.5889 12 6 2.4219 -4.0355 1.4375 13 6 3.1864 -5.3609 1.4376 14 6 2.3086 -6.4560 0.8282 15 6 1.9448 -6.0772 -0.6088 16 1 2.8555 -5.9714 -1.1984 17 7 1.1039 -7.1254 -1.1921 18 6 1.6726 -8.2081 -1.7586 19 8 2.8826 -8.3150 -1.7851 20 6 0.8215 -9.2689 -2.3495 21 6 1.4303 -10.3892 -2.9345 22 6 0.6582 -11.3698 -3.4874 23 6 -0.7409 -11.2229 -3.4387 24 6 -1.5953 -12.1952 -3.9831 25 6 -2.9435 -12.0162 -3.9236 26 6 -3.4897 -10.8801 -3.3279 27 6 -2.6936 -9.9175 -2.7902 28 6 -1.2938 -10.0652 -2.8320 29 7 -0.4902 -9.1373 -2.3129 30 6 1.1809 -4.7521 -0.6091 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 1.5112 -4.1418 2.0270 34 1 3.0469 -3.2553 1.8718 35 1 3.4460 -5.6306 2.4613 36 1 4.0970 -5.2551 0.8480 37 1 1.3980 -6.5617 1.4177 38 1 2.8534 -7.4001 0.8279 39 1 0.1379 -7.0403 -1.1708 40 1 2.5069 -10.4735 -2.9513 41 1 1.1089 -12.2372 -3.9466 42 1 -1.1851 -13.0799 -4.4473 43 1 -3.5991 -12.7649 -4.3432 44 1 -4.5628 -10.7623 -3.2933 45 1 -3.1332 -9.0434 -2.3329 46 1 0.9216 -4.4822 -1.6328 47 1 0.2701 -4.8583 -0.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981478830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:06 Heat of formation + Delta-G solvation = -3.060402 kcal Electronic energy + Delta-G solvation = -28048.216575 eV Core-core repulsion = 24194.316095 eV Total energy + Delta-G solvation = -3853.900480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.08457 -40.91981 -39.36204 -37.83792 -36.30245 -35.01982 -34.45173 -32.95447 -31.92187 -31.12212 -30.46953 -29.38451 -26.32460 -25.69355 -24.72740 -23.36484 -23.09143 -22.88840 -21.58962 -20.96959 -19.54037 -19.03133 -18.78115 -18.18637 -17.36883 -16.62216 -16.40031 -16.35166 -15.94231 -15.57279 -15.44843 -15.29545 -15.28470 -15.03454 -14.96577 -14.77414 -14.36826 -14.11798 -14.04017 -13.61662 -13.42249 -12.90906 -12.83912 -12.70859 -12.63807 -12.46256 -12.28025 -12.17627 -12.05952 -11.98023 -11.66775 -11.66203 -11.64975 -11.41350 -11.19431 -10.87856 -10.62263 -10.17691 -9.82085 -9.28166 -9.00418 -7.93715 -5.21876 -0.86256 -0.35442 0.91152 1.36374 1.47060 1.48473 1.56816 1.93774 2.19978 2.56506 2.91679 3.07446 3.39399 3.55238 3.60452 3.65514 3.82292 3.83521 3.87551 4.02631 4.14515 4.23841 4.25130 4.29184 4.37175 4.41481 4.50097 4.50952 4.55605 4.64561 4.74245 4.77310 4.90313 5.00673 5.02528 5.07674 5.09492 5.15215 5.20777 5.33786 5.37122 5.40195 5.43711 5.49241 5.49585 5.52492 5.64619 5.85533 6.28314 6.32167 6.65627 7.04281 7.34752 8.10215 8.34157 9.29798 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016713 B = 0.002152 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.922245 B =13006.182307 C =14067.150049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.236 4.236 8 H 0.074 0.926 9 N -0.736 5.736 10 C 0.178 3.822 11 H 0.039 0.961 12 C -0.127 4.127 13 C -0.105 4.105 14 C -0.116 4.116 15 C 0.156 3.844 16 H 0.076 0.924 17 N -0.696 5.696 18 C 0.567 3.433 19 O -0.561 6.561 20 C 0.096 3.904 21 C -0.142 4.142 22 C -0.047 4.047 23 C -0.101 4.101 24 C -0.101 4.101 25 C -0.104 4.104 26 C -0.094 4.094 27 C -0.111 4.111 28 C 0.097 3.903 29 N -0.460 5.460 30 C -0.115 4.115 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.415 0.585 40 H 0.153 0.847 41 H 0.185 0.815 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.137 0.863 46 H 0.058 0.942 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -31.476 -7.383 32.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.368 4.368 8 H 0.092 0.908 9 N -0.376 5.376 10 C 0.070 3.930 11 H 0.057 0.943 12 C -0.167 4.167 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.052 3.948 16 H 0.094 0.906 17 N -0.345 5.345 18 C 0.352 3.648 19 O -0.439 6.439 20 C -0.057 4.057 21 C -0.163 4.163 22 C -0.073 4.073 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.129 4.129 28 C -0.027 4.027 29 N -0.172 5.172 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.252 0.748 40 H 0.171 0.829 41 H 0.202 0.798 42 H 0.182 0.818 43 H 0.181 0.819 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.077 0.923 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.363 -30.657 -7.014 31.750 hybrid contribution -0.057 0.973 -0.189 0.993 sum -4.420 -29.684 -7.203 30.863 Atomic orbital electron populations 1.69816 1.06509 1.25935 1.59799 1.25532 0.96396 1.00969 1.04052 0.85178 0.77747 0.79737 0.77358 1.21562 1.22211 1.19496 1.19598 0.91366 0.85220 1.40602 0.90811 1.42587 1.05439 1.00837 1.88711 1.20298 0.93786 0.84570 0.94391 0.94257 1.22098 0.99675 0.96527 0.98390 1.21408 0.98047 0.93451 1.01415 1.21817 1.00495 0.98660 0.94496 1.20887 0.93707 0.85522 0.94728 0.90559 1.45937 1.11565 1.19812 1.57207 1.18229 0.86896 0.81917 0.77747 1.90751 1.14562 1.78743 1.59840 1.21235 0.90166 0.95333 0.98922 1.21841 1.02965 0.93349 0.98142 1.21889 0.91595 0.98954 0.94859 1.19316 0.95366 0.96048 0.99607 1.21404 0.93603 0.98501 0.98454 1.21478 0.95621 0.97841 0.97248 1.21356 1.01713 0.92926 0.95360 1.21083 0.90149 1.01055 1.00627 1.19268 0.94770 0.91110 0.97562 1.67735 1.04144 1.29484 1.15864 1.21871 0.99168 0.93108 1.01251 0.94097 0.79525 0.92940 0.93679 0.90349 0.91945 0.91099 0.91721 0.74807 0.82906 0.79816 0.81807 0.81939 0.82426 0.84470 0.92301 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.92 29.55 68.60 2.03 48.94 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.24 -13.28 9.93 84.03 0.83 -12.45 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.58 5.12 -322.95 -1.65 -39.23 16 10 C 0.18 7.16 2.77 44.99 0.12 7.28 16 11 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 12 C -0.13 -4.51 5.50 30.59 0.17 -4.35 16 13 C -0.10 -2.94 5.92 30.60 0.18 -2.76 16 14 C -0.12 -3.16 5.49 30.60 0.17 -2.99 16 15 C 0.16 4.64 2.45 44.98 0.11 4.75 16 16 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 17 N -0.70 -19.28 5.06 -445.05 -2.25 -21.53 16 18 C 0.57 16.62 7.78 86.92 0.68 17.30 16 19 O -0.56 -19.05 15.94 -3.72 -0.06 -19.11 16 20 C 0.10 2.45 6.75 42.31 0.29 2.74 16 21 C -0.14 -2.86 9.54 22.36 0.21 -2.65 16 22 C -0.05 -0.67 9.88 22.48 0.22 -0.45 16 23 C -0.10 -1.61 5.75 -21.22 -0.12 -1.74 16 24 C -0.10 -0.93 9.77 22.31 0.22 -0.71 16 25 C -0.10 -0.78 9.96 22.07 0.22 -0.56 16 26 C -0.09 -0.95 9.94 22.03 0.22 -0.73 16 27 C -0.11 -1.82 9.99 22.38 0.22 -1.60 16 28 C 0.10 2.02 6.61 40.47 0.27 2.28 16 29 N -0.46 -11.43 9.47 -177.76 -1.68 -13.12 16 30 C -0.12 -3.87 4.85 30.58 0.15 -3.72 16 31 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 32 H 0.37 20.33 7.80 -92.71 -0.72 19.60 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.41 10.65 7.90 -92.71 -0.73 9.91 16 40 H 0.15 2.88 7.60 -2.91 -0.02 2.86 16 41 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.16 0.42 8.06 -2.91 -0.02 0.39 16 43 H 0.16 0.15 8.06 -2.91 -0.02 0.12 16 44 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 45 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -73.00 388.43 0.82 -72.17 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -0.46 Total: 35.95 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 4.62 Total: -4.39 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -5.31 Total: -133.57 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.06 Total: -19.11 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -73.00 0.82 -72.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981478830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.111 kcal (2) G-P(sol) polarization free energy of solvation -72.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds