Wall clock time and date at job start Tue Mar 31 2020 22:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99675 * 2 1 4 4 H 1.48498 * 109.47204 * 239.99757 * 3 2 1 5 5 H 1.48496 * 109.47286 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47101 * 120.00123 * 3 2 1 7 7 C 1.38804 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99718 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00093 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47391 * 34.98894 * 10 9 7 12 12 C 1.53009 * 109.46804 * 274.99763 * 10 9 7 13 13 C 1.52996 * 109.46622 * 299.99735 * 12 10 9 14 14 C 1.53001 * 109.47457 * 300.00088 * 13 12 10 15 15 C 1.52996 * 109.47035 * 59.99939 * 14 13 12 16 16 H 1.09004 * 109.46749 * 60.00599 * 15 14 13 17 17 N 1.46503 * 109.46922 * 179.97438 * 15 14 13 18 18 C 1.34781 * 120.00028 * 274.99944 * 17 15 14 19 19 O 1.21599 * 119.99789 * 0.02562 * 18 17 15 20 20 C 1.47444 * 119.99738 * 179.97438 * 18 17 15 21 21 C 1.38865 * 120.46517 * 354.15081 * 20 18 17 22 22 C 1.38897 * 120.67797 * 179.97438 * 21 20 18 23 23 C 1.36373 * 121.27354 * 0.02562 * 22 21 20 24 24 C 1.40396 * 119.98344 * 0.02562 * 23 22 21 25 25 C 1.40470 * 121.94906 * 180.02562 * 24 23 22 26 26 N 1.31280 * 119.88217 * 179.97438 * 25 24 23 27 27 C 1.32555 * 122.73067 * 0.02562 * 26 25 24 28 28 C 1.36330 * 121.82347 * 359.97051 * 27 26 25 29 29 C 1.40291 * 118.69954 * 0.02589 * 28 27 26 30 30 C 1.52991 * 109.47567 * 154.99503 * 10 9 7 31 31 H 0.97006 * 120.00413 * 359.97438 * 1 2 3 32 32 H 0.96993 * 119.99982 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.46675 * 180.02562 * 12 10 9 34 34 H 1.08993 * 109.47249 * 59.99811 * 12 10 9 35 35 H 1.09003 * 109.46577 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47039 * 60.00740 * 13 12 10 37 37 H 1.09008 * 109.46780 * 300.00123 * 14 13 12 38 38 H 1.08998 * 109.47103 * 180.02562 * 14 13 12 39 39 H 0.96997 * 119.99998 * 95.00670 * 17 15 14 40 40 H 1.07996 * 119.65367 * 359.97365 * 21 20 18 41 41 H 1.07997 * 119.36643 * 180.02562 * 22 21 20 42 42 H 1.07996 * 120.00722 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.05976 * 359.97438 * 25 24 23 44 44 H 1.08006 * 119.08814 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.64750 * 180.02562 * 28 27 26 46 46 H 1.09003 * 109.47464 * 299.99912 * 30 10 9 47 47 H 1.09000 * 109.47838 * 179.97438 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 2.9685 -3.5502 0.5916 12 6 2.4230 -4.0361 -1.4350 13 6 1.1453 -4.1857 -2.2631 14 6 0.2677 -5.2808 -1.6536 15 6 -0.0971 -4.9014 -0.2170 16 1 -0.6422 -3.9574 -0.2178 17 7 -0.9380 -5.9497 0.3664 18 6 -2.2701 -5.9369 0.1618 19 8 -2.7739 -5.0554 -0.5074 20 6 -3.1162 -6.9923 0.7485 21 6 -2.5410 -8.0690 1.4104 22 6 -3.3339 -9.0654 1.9652 23 6 -4.6940 -9.0188 1.8777 24 6 -5.3182 -7.9491 1.2165 25 6 -6.7154 -7.8593 1.1025 26 7 -7.2564 -6.8405 0.4757 27 6 -6.5366 -5.8695 -0.0684 28 6 -5.1745 -5.8658 -0.0112 29 6 -4.5248 -6.9231 0.6432 30 6 1.1806 -4.7518 0.6112 31 1 -0.4851 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.9677 -4.9804 -1.4342 34 1 3.0482 -3.2560 -1.8692 35 1 1.4053 -4.4555 -3.2867 36 1 0.6003 -3.2417 -2.2639 37 1 0.8128 -6.2248 -1.6528 38 1 -0.6424 -5.3876 -2.2438 39 1 -0.5360 -6.6530 0.9000 40 1 -1.4662 -8.1322 1.4947 41 1 -2.8642 -9.8931 2.4758 42 1 -5.2907 -9.8049 2.3162 43 1 -7.3435 -8.6270 1.5297 44 1 -7.0432 -5.0588 -0.5710 45 1 -4.6067 -5.0646 -0.4608 46 1 0.9207 -4.4815 1.6347 47 1 1.7254 -5.6959 0.6116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981522235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:29 Heat of formation + Delta-G solvation = 26.830711 kcal Electronic energy + Delta-G solvation = -28993.999729 eV Core-core repulsion = 25141.395424 eV Total energy + Delta-G solvation = -3852.604304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24766 -39.73826 -38.10426 -37.30950 -34.63989 -33.19848 -32.98839 -31.46542 -30.94699 -30.27120 -28.91415 -27.97675 -24.89482 -23.88444 -23.63326 -23.47514 -21.92189 -21.62315 -20.57778 -18.82672 -18.23458 -17.84141 -17.25851 -16.71328 -16.37957 -15.82654 -15.34310 -15.07951 -14.86537 -14.63320 -14.30656 -14.19969 -13.96800 -13.66622 -13.59290 -13.46758 -13.05100 -12.80345 -12.46739 -12.31699 -12.21124 -12.04949 -11.82959 -11.77816 -11.40753 -10.90096 -10.81976 -10.74082 -10.36537 -10.23953 -10.19553 -10.10780 -10.01630 -9.70402 -9.52439 -9.40140 -9.29629 -8.95946 -8.79701 -8.29612 -6.93446 -5.72871 -3.02333 -0.11531 0.63193 1.49735 2.50852 3.09699 3.20793 3.45289 3.49861 3.51223 3.92219 4.25321 4.30011 4.34677 4.45510 4.61133 4.64562 4.70367 4.82066 5.06482 5.15974 5.19838 5.30879 5.41737 5.47702 5.60367 5.63827 5.67419 5.69842 5.71837 5.78042 5.84139 5.89013 5.91411 6.06710 6.08461 6.14313 6.17803 6.31915 6.41624 6.42223 6.55542 6.61612 6.68709 6.78779 6.83826 7.00884 7.10270 7.52844 7.72030 7.80763 8.25301 8.44888 9.55948 10.13195 10.47369 11.49120 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002733 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.566142 B =10241.914122 C =11295.182223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.180 3.820 11 H 0.051 0.949 12 C -0.135 4.135 13 C -0.109 4.109 14 C -0.120 4.120 15 C 0.145 3.855 16 H 0.102 0.898 17 N -0.716 5.716 18 C 0.556 3.444 19 O -0.522 6.522 20 C -0.121 4.121 21 C -0.061 4.061 22 C -0.131 4.131 23 C -0.062 4.062 24 C -0.120 4.120 25 C 0.136 3.864 26 N -0.486 5.486 27 C 0.072 3.928 28 C -0.149 4.149 29 C 0.010 3.990 30 C -0.128 4.128 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.394 0.606 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.179 0.821 46 H 0.068 0.932 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -22.835 3.341 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.069 0.931 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.159 4.159 15 C 0.042 3.958 16 H 0.120 0.880 17 N -0.366 5.366 18 C 0.343 3.657 19 O -0.400 6.400 20 C -0.124 4.124 21 C -0.081 4.081 22 C -0.149 4.149 23 C -0.082 4.082 24 C -0.122 4.122 25 C -0.036 4.036 26 N -0.194 5.194 27 C -0.071 4.071 28 C -0.168 4.168 29 C 0.004 3.996 30 C -0.167 4.167 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.229 0.771 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.180 0.820 44 H 0.173 0.827 45 H 0.196 0.804 46 H 0.086 0.914 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.775 -21.819 2.714 23.321 hybrid contribution 1.339 0.464 0.340 1.457 sum -6.436 -21.355 3.055 22.512 Atomic orbital electron populations 1.69654 1.05020 1.25756 1.57348 1.24732 0.95460 0.97593 1.03024 0.86312 0.78523 0.83834 0.77746 1.21345 1.21766 1.21387 1.19168 0.90904 0.84148 1.42978 0.91293 1.42496 1.05767 0.99592 1.88543 1.20150 0.93952 0.85944 0.93075 0.93084 1.22185 0.96901 0.99466 0.99036 1.21356 0.96709 0.99273 0.97420 1.21845 0.99680 0.98752 0.95577 1.21134 0.91126 0.91163 0.92409 0.88045 1.46109 1.06545 1.30154 1.53806 1.18017 0.82292 0.84782 0.80562 1.90649 1.72467 1.37280 1.39619 1.19978 0.93002 0.96870 1.02532 1.21496 1.00315 0.92487 0.93789 1.20822 0.93852 0.99335 1.00885 1.21165 0.95083 0.96318 0.95646 1.19029 0.95484 0.96343 1.01385 1.23160 0.90661 0.95453 0.94285 1.67404 1.41734 1.01967 1.08285 1.22392 0.91455 0.96367 0.96901 1.23035 0.96194 0.99674 0.97926 1.17955 0.92012 0.94111 0.95517 1.22084 0.95387 0.99618 0.99595 0.93448 0.78037 0.93896 0.91958 0.93256 0.90285 0.92787 0.92249 0.77132 0.85024 0.84860 0.84573 0.82015 0.82694 0.80446 0.91355 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.72 -17.41 4.28 -53.43 -0.23 -17.63 16 10 C 0.18 3.36 3.10 -67.93 -0.21 3.15 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.31 5.61 -26.73 -0.15 -2.46 16 13 C -0.11 -1.86 5.76 -26.73 -0.15 -2.02 16 14 C -0.12 -1.82 5.49 -26.73 -0.15 -1.97 16 15 C 0.14 2.28 2.28 -67.93 -0.15 2.13 16 16 H 0.10 2.06 5.94 -51.93 -0.31 1.75 16 17 N -0.72 -9.21 5.03 -54.87 -0.28 -9.49 16 18 C 0.56 8.23 7.69 -12.51 -0.10 8.13 16 19 O -0.52 -9.65 13.16 5.28 0.07 -9.59 16 20 C -0.12 -1.48 5.90 -104.70 -0.62 -2.10 16 21 C -0.06 -0.52 9.51 -39.11 -0.37 -0.89 16 22 C -0.13 -0.90 9.92 -40.01 -0.40 -1.30 16 23 C -0.06 -0.46 9.79 -39.44 -0.39 -0.84 16 24 C -0.12 -1.26 5.74 -106.88 -0.61 -1.87 16 25 C 0.14 1.37 11.05 -16.95 -0.19 1.18 16 26 N -0.49 -6.05 10.30 -13.11 -0.14 -6.19 16 27 C 0.07 0.91 11.07 -17.93 -0.20 0.71 16 28 C -0.15 -2.10 9.28 -39.50 -0.37 -2.47 16 29 C 0.01 0.13 5.77 -106.55 -0.61 -0.49 16 30 C -0.13 -1.93 5.08 -26.74 -0.14 -2.07 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.38 10.04 6.06 -40.82 -0.25 9.79 16 33 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.64 7.60 -51.93 -0.39 1.24 16 37 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.39 3.68 6.68 -40.82 -0.27 3.40 16 40 H 0.13 0.77 6.43 -52.49 -0.34 0.44 16 41 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 45 H 0.18 2.82 5.06 -52.48 -0.27 2.55 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -33.52 376.38 -10.69 -44.20 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.44 Total: 13.38 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -5.05 Total: -10.28 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.09 Total: -60.75 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.52 -10.69 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981522235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.033 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds