Wall clock time and date at job start Tue Mar 31 2020 22:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99675 * 2 1 4 4 H 1.48498 * 109.47204 * 239.99757 * 3 2 1 5 5 H 1.48496 * 109.47286 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47101 * 120.00123 * 3 2 1 7 7 C 1.38804 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99718 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00093 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47391 * 34.98894 * 10 9 7 12 12 C 1.53009 * 109.46804 * 274.99763 * 10 9 7 13 13 C 1.52996 * 109.46622 * 299.99735 * 12 10 9 14 14 C 1.53001 * 109.47457 * 300.00088 * 13 12 10 15 15 C 1.52996 * 109.47035 * 59.99939 * 14 13 12 16 16 H 1.09004 * 109.46749 * 60.00599 * 15 14 13 17 17 N 1.46503 * 109.46922 * 179.97438 * 15 14 13 18 18 C 1.34781 * 120.00028 * 274.99944 * 17 15 14 19 19 O 1.21599 * 119.99789 * 0.02562 * 18 17 15 20 20 C 1.47444 * 119.99738 * 179.97438 * 18 17 15 21 21 C 1.38865 * 120.46517 * 354.15081 * 20 18 17 22 22 C 1.38897 * 120.67797 * 179.97438 * 21 20 18 23 23 C 1.36373 * 121.27354 * 0.02562 * 22 21 20 24 24 C 1.40396 * 119.98344 * 0.02562 * 23 22 21 25 25 C 1.40470 * 121.94906 * 180.02562 * 24 23 22 26 26 N 1.31280 * 119.88217 * 179.97438 * 25 24 23 27 27 C 1.32555 * 122.73067 * 0.02562 * 26 25 24 28 28 C 1.36330 * 121.82347 * 359.97051 * 27 26 25 29 29 C 1.40291 * 118.69954 * 0.02589 * 28 27 26 30 30 C 1.52991 * 109.47567 * 154.99503 * 10 9 7 31 31 H 0.97006 * 120.00413 * 359.97438 * 1 2 3 32 32 H 0.96993 * 119.99982 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.46675 * 180.02562 * 12 10 9 34 34 H 1.08993 * 109.47249 * 59.99811 * 12 10 9 35 35 H 1.09003 * 109.46577 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47039 * 60.00740 * 13 12 10 37 37 H 1.09008 * 109.46780 * 300.00123 * 14 13 12 38 38 H 1.08998 * 109.47103 * 180.02562 * 14 13 12 39 39 H 0.96997 * 119.99998 * 95.00670 * 17 15 14 40 40 H 1.07996 * 119.65367 * 359.97365 * 21 20 18 41 41 H 1.07997 * 119.36643 * 180.02562 * 22 21 20 42 42 H 1.07996 * 120.00722 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.05976 * 359.97438 * 25 24 23 44 44 H 1.08006 * 119.08814 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.64750 * 180.02562 * 28 27 26 46 46 H 1.09003 * 109.47464 * 299.99912 * 30 10 9 47 47 H 1.09000 * 109.47838 * 179.97438 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 2.9685 -3.5502 0.5916 12 6 2.4230 -4.0361 -1.4350 13 6 1.1453 -4.1857 -2.2631 14 6 0.2677 -5.2808 -1.6536 15 6 -0.0971 -4.9014 -0.2170 16 1 -0.6422 -3.9574 -0.2178 17 7 -0.9380 -5.9497 0.3664 18 6 -2.2701 -5.9369 0.1618 19 8 -2.7739 -5.0554 -0.5074 20 6 -3.1162 -6.9923 0.7485 21 6 -2.5410 -8.0690 1.4104 22 6 -3.3339 -9.0654 1.9652 23 6 -4.6940 -9.0188 1.8777 24 6 -5.3182 -7.9491 1.2165 25 6 -6.7154 -7.8593 1.1025 26 7 -7.2564 -6.8405 0.4757 27 6 -6.5366 -5.8695 -0.0684 28 6 -5.1745 -5.8658 -0.0112 29 6 -4.5248 -6.9231 0.6432 30 6 1.1806 -4.7518 0.6112 31 1 -0.4851 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.9677 -4.9804 -1.4342 34 1 3.0482 -3.2560 -1.8692 35 1 1.4053 -4.4555 -3.2867 36 1 0.6003 -3.2417 -2.2639 37 1 0.8128 -6.2248 -1.6528 38 1 -0.6424 -5.3876 -2.2438 39 1 -0.5360 -6.6530 0.9000 40 1 -1.4662 -8.1322 1.4947 41 1 -2.8642 -9.8931 2.4758 42 1 -5.2907 -9.8049 2.3162 43 1 -7.3435 -8.6270 1.5297 44 1 -7.0432 -5.0588 -0.5710 45 1 -4.6067 -5.0646 -0.4608 46 1 0.9207 -4.4815 1.6347 47 1 1.7254 -5.6959 0.6116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981522235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:28 Heat of formation + Delta-G solvation = 4.555719 kcal Electronic energy + Delta-G solvation = -28994.965645 eV Core-core repulsion = 25141.395424 eV Total energy + Delta-G solvation = -3853.570221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11383 -40.87138 -39.40574 -38.12823 -36.11014 -34.81719 -33.88652 -32.74686 -32.26128 -31.22342 -30.23306 -29.47406 -25.80171 -25.59114 -24.72830 -24.35251 -23.32014 -22.81501 -21.69440 -20.15938 -19.28230 -19.02468 -18.78370 -17.62419 -17.25096 -17.05752 -16.54386 -16.36423 -16.11194 -15.85713 -15.41599 -15.35396 -15.28020 -15.11034 -14.90284 -14.67412 -14.28724 -13.79790 -13.54212 -13.44585 -13.39952 -13.04247 -12.94280 -12.85319 -12.79533 -12.69268 -12.62086 -12.19872 -12.16368 -11.82147 -11.58678 -11.42292 -11.21461 -11.16163 -10.88627 -10.82245 -10.33012 -10.17695 -10.06454 -9.11593 -8.95961 -7.90810 -5.18658 -0.88002 -0.13755 0.61835 1.44968 1.48102 1.54152 1.72034 2.03693 2.24604 2.57278 3.08820 3.42053 3.48524 3.50081 3.63819 3.75474 3.78609 3.89570 3.91641 3.94849 4.06146 4.16041 4.22453 4.35368 4.40061 4.44244 4.52256 4.61204 4.69074 4.72661 4.74977 4.80541 4.84401 4.92554 5.01806 5.08801 5.09842 5.19620 5.27003 5.30731 5.36940 5.42825 5.44874 5.52461 5.62562 5.66727 5.69139 5.79374 6.30608 6.51885 6.94516 7.22452 7.36168 8.16344 8.36231 9.32398 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002733 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.566142 B =10241.914122 C =11295.182223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.969 3.031 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.735 5.735 10 C 0.167 3.833 11 H 0.056 0.944 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.109 4.109 15 C 0.153 3.847 16 H 0.042 0.958 17 N -0.700 5.700 18 C 0.549 3.451 19 O -0.576 6.576 20 C -0.163 4.163 21 C -0.035 4.035 22 C -0.129 4.129 23 C -0.041 4.041 24 C -0.137 4.137 25 C 0.150 3.850 26 N -0.514 5.514 27 C 0.066 3.934 28 C -0.187 4.187 29 C -0.010 4.010 30 C -0.114 4.114 31 H 0.246 0.754 32 H 0.370 0.630 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.415 0.585 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.207 0.793 44 H 0.158 0.842 45 H 0.146 0.854 46 H 0.060 0.940 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 -28.146 5.436 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.229 1.229 6 H -0.202 1.202 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.058 3.942 11 H 0.074 0.926 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.147 4.147 15 C 0.048 3.952 16 H 0.061 0.939 17 N -0.352 5.352 18 C 0.339 3.661 19 O -0.457 6.457 20 C -0.166 4.166 21 C -0.054 4.054 22 C -0.147 4.147 23 C -0.061 4.061 24 C -0.139 4.139 25 C -0.022 4.022 26 N -0.223 5.223 27 C -0.075 4.075 28 C -0.206 4.206 29 C -0.016 4.016 30 C -0.153 4.153 31 H 0.055 0.945 32 H 0.202 0.798 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.254 0.746 40 H 0.181 0.819 41 H 0.197 0.803 42 H 0.200 0.800 43 H 0.224 0.776 44 H 0.176 0.824 45 H 0.163 0.837 46 H 0.079 0.921 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.822 -27.196 4.827 28.227 hybrid contribution 0.776 1.904 -0.250 2.071 sum -5.046 -25.291 4.577 26.193 Atomic orbital electron populations 1.69854 1.06748 1.25701 1.60160 1.25547 0.96198 1.01113 1.04520 0.85263 0.77099 0.79541 0.78195 1.20508 1.22858 1.20202 1.19622 0.91453 0.85324 1.39954 0.90330 1.42755 1.05356 1.01048 1.88444 1.20509 0.94237 0.84823 0.94595 0.92636 1.22061 0.96534 1.00892 0.97084 1.21288 0.96675 0.97551 0.98957 1.21741 0.98894 0.99588 0.94487 1.20776 0.91139 0.89748 0.93505 0.93936 1.45804 1.05819 1.29858 1.53673 1.18609 0.82843 0.84852 0.79843 1.90650 1.73447 1.39590 1.42056 1.19787 0.92387 0.98213 1.06197 1.21967 1.02232 0.90666 0.90578 1.21361 0.93655 0.99649 1.00027 1.21730 0.95922 0.95391 0.93046 1.19337 0.95584 0.96854 1.02099 1.23962 0.91298 0.94952 0.91952 1.67473 1.41832 1.02944 1.10035 1.22439 0.91110 0.96984 0.97013 1.22803 0.96720 1.00525 1.00577 1.18221 0.92998 0.94542 0.95793 1.21963 0.94550 1.00476 0.98303 0.94480 0.79758 0.89366 0.94173 0.91450 0.95538 0.88753 0.94191 0.74595 0.81934 0.80310 0.80008 0.77606 0.82438 0.83722 0.92140 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.65 13.06 21.65 0.28 -62.36 16 2 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 3 Si 0.97 47.59 29.55 68.60 2.03 49.61 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.23 -12.91 9.93 84.03 0.83 -12.08 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -36.94 4.28 -322.94 -1.38 -38.32 16 10 C 0.17 6.11 3.10 44.99 0.14 6.25 16 11 H 0.06 2.00 8.08 -2.38 -0.02 1.98 16 12 C -0.13 -4.10 5.61 30.60 0.17 -3.92 16 13 C -0.11 -3.66 5.76 30.59 0.18 -3.49 16 14 C -0.11 -3.25 5.49 30.59 0.17 -3.08 16 15 C 0.15 4.90 2.28 44.99 0.10 5.00 16 16 H 0.04 1.90 5.94 -2.39 -0.01 1.89 16 17 N -0.70 -17.70 5.03 -445.78 -2.24 -19.94 16 18 C 0.55 17.24 7.69 86.67 0.67 17.91 16 19 O -0.58 -24.15 13.16 -4.03 -0.05 -24.20 16 20 C -0.16 -3.97 5.90 -19.92 -0.12 -4.08 16 21 C -0.03 -0.46 9.51 22.58 0.21 -0.25 16 22 C -0.13 -1.02 9.92 21.99 0.22 -0.80 16 23 C -0.04 -0.39 9.79 22.36 0.22 -0.17 16 24 C -0.14 -2.57 5.74 -21.33 -0.12 -2.70 16 25 C 0.15 2.71 11.05 85.32 0.94 3.66 16 26 N -0.51 -13.01 10.30 -195.39 -2.01 -15.03 16 27 C 0.07 1.89 11.07 84.14 0.93 2.82 16 28 C -0.19 -5.97 9.28 22.32 0.21 -5.76 16 29 C -0.01 -0.26 5.77 -21.11 -0.12 -0.38 16 30 C -0.11 -3.25 5.08 30.59 0.16 -3.09 16 31 H 0.25 15.59 8.31 -92.70 -0.77 14.82 16 32 H 0.37 20.80 6.06 -92.71 -0.56 20.24 16 33 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.03 1.17 7.60 -2.39 -0.02 1.15 16 37 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.42 6.48 6.68 -92.71 -0.62 5.86 16 40 H 0.16 1.03 6.43 -2.91 -0.02 1.02 16 41 H 0.18 -0.07 8.06 -2.91 -0.02 -0.10 16 42 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 43 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 45 H 0.15 5.53 5.06 -2.91 -0.01 5.52 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -84.54 376.38 1.71 -82.83 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.17 Total: 35.96 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.25 Total: -8.55 kcal Atomic # 7 Polarization: -130.30 SS G_CDS: -5.35 Total: -135.65 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Total: -84.54 1.71 -82.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981522235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.386 kcal (2) G-P(sol) polarization free energy of solvation -84.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds