Wall clock time and date at job start Tue Mar 31 2020 23:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99773 * 2 1 4 4 H 1.48497 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47072 * 299.99787 * 3 2 1 6 6 H 1.48504 * 109.47051 * 59.99593 * 3 2 1 7 7 C 1.38806 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00137 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47341 * 325.00270 * 10 9 7 12 12 C 1.52996 * 109.46985 * 85.00132 * 10 9 7 13 13 C 1.53001 * 109.47333 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46639 * 300.00006 * 13 12 10 15 15 C 1.52995 * 109.47579 * 60.00164 * 14 13 12 16 16 H 1.08998 * 109.47334 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.47229 * 59.99480 * 15 14 13 18 18 C 1.34776 * 119.99984 * 85.00380 * 17 15 14 19 19 O 1.21606 * 119.99953 * 359.97438 * 18 17 15 20 20 C 1.47441 * 120.00177 * 180.02562 * 18 17 15 21 21 C 1.38953 * 121.16723 * 359.97438 * 20 18 17 22 22 N 1.32204 * 121.30796 * 179.97438 * 21 20 18 23 23 C 1.31195 * 123.70349 * 0.02562 * 22 21 20 24 24 C 1.40387 * 120.91629 * 359.97438 * 23 22 21 25 25 C 1.40395 * 122.15218 * 180.02562 * 24 23 22 26 26 C 1.36227 * 119.48543 * 179.97438 * 25 24 23 27 27 C 1.39292 * 121.11070 * 0.02562 * 26 25 24 28 28 C 1.36444 * 120.94417 * 359.97438 * 27 26 25 29 29 C 1.39689 * 119.43263 * 0.02562 * 28 27 26 30 30 C 1.52994 * 109.47077 * 204.99824 * 10 9 7 31 31 H 0.97005 * 120.00388 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00266 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47496 * 59.99875 * 12 10 9 34 34 H 1.09002 * 109.47090 * 300.00382 * 12 10 9 35 35 H 1.08997 * 109.47009 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.47199 * 60.00012 * 13 12 10 37 37 H 1.09005 * 109.47038 * 299.99459 * 14 13 12 38 38 H 1.09001 * 109.46794 * 179.97438 * 14 13 12 39 39 H 0.96996 * 119.99831 * 265.00789 * 17 15 14 40 40 H 1.07999 * 119.34451 * 0.26279 * 21 20 18 41 41 H 1.08000 * 119.54201 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.25500 * 0.02562 * 25 24 23 43 43 H 1.07996 * 119.44343 * 180.02562 * 26 25 24 44 44 H 1.07999 * 119.53091 * 180.02562 * 27 26 25 45 45 H 1.07994 * 120.28183 * 179.97438 * 28 27 26 46 46 H 1.09006 * 109.47325 * 60.00402 * 30 10 9 47 47 H 1.09005 * 109.47404 * 300.00403 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5888 12 6 2.4220 -4.0355 1.4375 13 6 3.1877 -5.3602 1.4376 14 6 2.3110 -6.4558 0.8277 15 6 1.9471 -6.0771 -0.6093 16 1 1.3222 -6.8575 -1.0436 17 7 3.1712 -5.9337 -1.4014 18 6 3.7383 -7.0173 -1.9676 19 8 3.2342 -8.1141 -1.8207 20 6 4.9705 -6.8730 -2.7643 21 6 5.5673 -5.6316 -2.9475 22 7 6.6724 -5.4992 -3.6608 23 6 7.2870 -6.5009 -4.2439 24 6 6.7912 -7.8102 -4.1398 25 6 7.4281 -8.9011 -4.7525 26 6 6.8998 -10.1493 -4.6156 27 6 5.7375 -10.3620 -3.8780 28 6 5.0931 -9.3247 -3.2695 29 6 5.6077 -8.0316 -3.3897 30 6 1.1810 -4.7521 -0.6090 31 1 -0.4851 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 1.5113 -4.1418 2.0270 34 1 3.0469 -3.2551 1.8719 35 1 3.4472 -5.6297 2.4613 36 1 4.0984 -5.2535 0.8483 37 1 1.4002 -6.5625 1.4171 38 1 2.8566 -7.3994 0.8273 39 1 3.5735 -5.0588 -1.5182 40 1 5.1220 -4.7583 -2.4942 41 1 8.1872 -6.3159 -4.8111 42 1 8.3302 -8.7520 -5.3272 43 1 7.3905 -10.9881 -5.0869 44 1 5.3412 -11.3624 -3.7858 45 1 4.1924 -9.5017 -2.7006 46 1 0.9218 -4.4823 -1.6329 47 1 0.2703 -4.8583 -0.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981540094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:40 Heat of formation + Delta-G solvation = 3.971704 kcal Electronic energy + Delta-G solvation = -28975.673306 eV Core-core repulsion = 25122.077760 eV Total energy + Delta-G solvation = -3853.595545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.01015 -40.89474 -39.16058 -38.35198 -36.17892 -34.62058 -33.75937 -32.91696 -32.16818 -31.41213 -30.19252 -29.44397 -26.10499 -25.65520 -24.52309 -23.97485 -23.24961 -22.53571 -22.11410 -20.25913 -19.26248 -19.06856 -18.57150 -18.34665 -17.05552 -16.90357 -16.54655 -16.38378 -16.03034 -15.94543 -15.58061 -15.25316 -15.18669 -14.95275 -14.72352 -14.70400 -14.35036 -13.91839 -13.73042 -13.52856 -13.17559 -13.09868 -13.05346 -12.91285 -12.88930 -12.81509 -12.39033 -12.21588 -12.03078 -11.96495 -11.62696 -11.47680 -11.11850 -11.06598 -11.01275 -10.85844 -10.40159 -10.14399 -10.07458 -9.14139 -8.98600 -7.92829 -5.20554 -0.97777 -0.13531 0.66655 1.47811 1.48407 1.57830 1.73604 2.03666 2.19426 2.56727 3.05703 3.20561 3.40843 3.49208 3.59592 3.68097 3.70665 3.85557 3.87635 3.90694 3.99902 4.25934 4.27676 4.29615 4.32783 4.34711 4.48123 4.53854 4.60783 4.65840 4.70173 4.76536 4.80558 4.90881 5.03961 5.06791 5.14095 5.17166 5.21193 5.35335 5.40948 5.43243 5.50104 5.51331 5.54771 5.58364 5.65121 5.91198 6.29605 6.41080 6.82079 7.09260 7.36074 8.12262 8.34583 9.30805 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.002766 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.551939 B =10121.357140 C =11429.309200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.043 0.957 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.120 4.120 15 C 0.160 3.840 16 H 0.087 0.913 17 N -0.706 5.706 18 C 0.569 3.431 19 O -0.563 6.563 20 C -0.200 4.200 21 C 0.124 3.876 22 N -0.524 5.524 23 C 0.188 3.812 24 C -0.139 4.139 25 C -0.075 4.075 26 C -0.123 4.123 27 C -0.088 4.088 28 C -0.146 4.146 29 C -0.008 4.008 30 C -0.122 4.122 31 H 0.249 0.751 32 H 0.372 0.628 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.405 0.595 40 H 0.162 0.838 41 H 0.207 0.793 42 H 0.175 0.825 43 H 0.163 0.837 44 H 0.148 0.852 45 H 0.143 0.857 46 H 0.062 0.938 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.226 -22.709 -8.764 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.376 5.376 10 C 0.068 3.932 11 H 0.061 0.939 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.159 4.159 15 C 0.055 3.945 16 H 0.105 0.895 17 N -0.358 5.358 18 C 0.357 3.643 19 O -0.444 6.444 20 C -0.205 4.205 21 C -0.020 4.020 22 N -0.231 5.231 23 C 0.017 3.983 24 C -0.141 4.141 25 C -0.095 4.095 26 C -0.141 4.141 27 C -0.107 4.107 28 C -0.163 4.163 29 C -0.013 4.013 30 C -0.161 4.161 31 H 0.058 0.942 32 H 0.204 0.796 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.243 0.757 40 H 0.179 0.821 41 H 0.223 0.777 42 H 0.192 0.808 43 H 0.180 0.820 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.080 0.920 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.217 -22.433 -8.642 28.998 hybrid contribution -0.781 1.043 0.405 1.364 sum 15.435 -21.390 -8.237 27.634 Atomic orbital electron populations 1.69814 1.06525 1.25765 1.59977 1.25490 0.96296 1.00881 1.04233 0.85172 0.78416 0.80357 0.76460 1.18955 1.22319 1.22394 1.19620 0.91373 0.85146 1.40183 0.90598 1.42630 1.05456 1.00898 1.88581 1.20364 0.93944 0.84736 0.94111 0.93904 1.22107 0.99552 0.96311 0.98776 1.21413 0.98103 0.93938 1.00924 1.21850 1.00994 0.98205 0.94837 1.20905 0.84888 0.97243 0.91458 0.89470 1.46096 1.27790 1.10156 1.51708 1.17994 0.83465 0.84239 0.78585 1.90599 1.64780 1.26183 1.62835 1.21863 0.98442 0.95377 1.04807 1.22931 0.90734 0.95574 0.92742 1.67207 1.09645 1.36121 1.10164 1.24025 0.97328 0.86099 0.90814 1.19324 0.96286 0.97162 1.01316 1.21448 1.00032 0.90843 0.97159 1.21408 0.95671 0.98586 0.98421 1.21530 0.94956 0.99753 0.94461 1.21699 1.01956 0.91651 1.01036 1.19172 0.94023 0.93235 0.94917 1.21994 0.99135 0.93354 1.01573 0.94207 0.79586 0.93079 0.94018 0.91290 0.92452 0.89921 0.91871 0.75734 0.82072 0.77656 0.80771 0.81983 0.83439 0.83977 0.91954 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.91 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.23 -12.46 9.93 84.03 0.83 -11.62 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -35.59 5.12 -322.96 -1.65 -37.24 16 10 C 0.18 6.44 2.60 44.99 0.12 6.56 16 11 H 0.04 1.55 6.44 -2.39 -0.02 1.53 16 12 C -0.13 -4.26 5.50 30.59 0.17 -4.09 16 13 C -0.11 -2.79 5.77 30.59 0.18 -2.61 16 14 C -0.12 -3.01 5.60 30.59 0.17 -2.84 16 15 C 0.16 4.26 2.78 45.01 0.13 4.38 16 16 H 0.09 2.38 7.58 -2.39 -0.02 2.37 16 17 N -0.71 -18.53 4.19 -445.70 -1.87 -20.40 16 18 C 0.57 16.15 7.74 86.67 0.67 16.82 16 19 O -0.56 -18.20 13.40 -4.05 -0.05 -18.26 16 20 C -0.20 -5.23 6.07 -18.59 -0.11 -5.34 16 21 C 0.12 3.04 10.71 84.81 0.91 3.94 16 22 N -0.52 -12.05 10.22 -193.72 -1.98 -14.03 16 23 C 0.19 3.14 11.00 85.31 0.94 4.08 16 24 C -0.14 -2.49 5.74 -21.33 -0.12 -2.62 16 25 C -0.08 -0.82 9.82 22.33 0.22 -0.60 16 26 C -0.12 -1.32 9.94 22.05 0.22 -1.10 16 27 C -0.09 -1.37 9.96 22.10 0.22 -1.15 16 28 C -0.15 -3.37 9.32 22.20 0.21 -3.16 16 29 C -0.01 -0.20 5.90 -19.94 -0.12 -0.32 16 30 C -0.12 -3.74 5.08 30.61 0.16 -3.58 16 31 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 32 H 0.37 19.54 7.80 -92.71 -0.72 18.82 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.50 7.60 -2.39 -0.02 1.48 16 37 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.40 10.18 4.97 -92.71 -0.46 9.72 16 40 H 0.16 3.60 6.44 -2.91 -0.02 3.58 16 41 H 0.21 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 43 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 45 H 0.14 3.88 5.24 -2.91 -0.02 3.86 16 46 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -71.37 377.26 1.83 -69.54 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -0.17 Total: 38.20 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.24 Total: -7.13 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -5.22 Total: -130.27 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.26 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.37 1.83 -69.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981540094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.511 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds