Wall clock time and date at job start Tue Mar 31 2020 23:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48492 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47068 * 300.00292 * 3 2 1 6 6 H 1.48501 * 109.46760 * 60.00283 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47497 * 59.99850 * 15 14 13 17 17 N 1.46500 * 109.47204 * 180.02562 * 15 14 13 18 18 C 1.34774 * 119.99914 * 274.99487 * 17 15 14 19 19 O 1.21600 * 120.00215 * 0.02562 * 18 17 15 20 20 C 1.47450 * 119.99939 * 179.97438 * 18 17 15 21 21 C 1.38946 * 121.17158 * 0.02562 * 20 18 17 22 22 N 1.32191 * 121.31802 * 180.02562 * 21 20 18 23 23 C 1.31200 * 123.70056 * 359.97438 * 22 21 20 24 24 C 1.40389 * 120.90844 * 359.97438 * 23 22 21 25 25 C 1.40397 * 122.14120 * 180.02562 * 24 23 22 26 26 C 1.36241 * 119.48462 * 179.19584 * 25 24 23 27 27 C 1.39291 * 121.10136 * 0.76871 * 26 25 24 28 28 C 1.36445 * 120.95025 * 359.47619 * 27 26 25 29 29 C 1.39694 * 119.43176 * 0.02562 * 28 27 26 30 30 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 31 31 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 34 34 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 35 35 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 37 37 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 38 38 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 39 39 H 0.96995 * 120.00272 * 95.00347 * 17 15 14 40 40 H 1.08001 * 119.34324 * 0.02562 * 21 20 18 41 41 H 1.07997 * 119.54613 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.25367 * 359.94224 * 25 24 23 43 43 H 1.07990 * 119.45001 * 180.22537 * 26 25 24 44 44 H 1.08000 * 119.52611 * 179.50423 * 27 26 25 45 45 H 1.07994 * 120.28376 * 180.02562 * 28 27 26 46 46 H 1.09002 * 109.47075 * 299.99543 * 30 10 9 47 47 H 1.08996 * 109.47407 * 60.00500 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 6 1.9469 -6.0771 -0.6104 16 1 2.8576 -5.9704 -1.1998 17 7 1.1070 -7.1259 -1.1942 18 6 1.6766 -8.2080 -1.7608 19 8 2.8877 -8.3140 -1.7871 20 6 0.8313 -9.2639 -2.3478 21 6 -0.5548 -9.1680 -2.3308 22 7 -1.3154 -10.1131 -2.8558 23 6 -0.8419 -11.1963 -3.4248 24 6 0.5414 -11.4196 -3.5113 25 6 1.0761 -12.5689 -4.1149 26 6 2.4281 -12.7228 -4.1839 27 6 3.2892 -11.7662 -3.6514 28 6 2.8035 -10.6400 -3.0535 29 6 1.4224 -10.4458 -2.9748 30 6 1.1808 -4.7521 -0.6103 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 3.0467 -3.2553 1.8709 34 1 1.5111 -4.1418 2.0259 35 1 3.4462 -5.6305 2.4602 36 1 4.0981 -5.2536 0.8472 37 1 1.4000 -6.5626 1.4159 38 1 2.8559 -7.3998 0.8270 39 1 0.1409 -7.0416 -1.1730 40 1 -1.0200 -8.3040 -1.8796 41 1 -1.5257 -11.9259 -3.8329 42 1 0.4210 -13.3194 -4.5320 43 1 2.8388 -13.6053 -4.6515 44 1 4.3567 -11.9178 -3.7131 45 1 3.4810 -9.9051 -2.6446 46 1 0.2701 -4.8584 -0.0208 47 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981540096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:49 Heat of formation + Delta-G solvation = 19.994078 kcal Electronic energy + Delta-G solvation = -28325.950611 eV Core-core repulsion = 24473.049848 eV Total energy + Delta-G solvation = -3852.900763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21772 -39.74707 -37.94253 -37.69789 -34.78716 -33.52968 -32.97881 -31.51885 -31.15264 -30.44717 -28.99096 -27.77154 -25.29019 -23.84741 -23.76525 -23.18831 -21.97908 -21.43873 -20.56677 -19.52680 -18.34639 -17.84356 -17.71477 -16.98804 -16.36288 -15.94487 -15.31716 -15.24296 -15.05115 -14.43713 -14.42903 -14.24552 -14.07162 -13.79272 -13.59265 -13.53490 -13.17020 -13.07301 -12.70614 -12.52178 -12.27321 -12.16235 -12.10114 -11.76832 -11.01248 -10.96856 -10.90203 -10.74801 -10.40801 -10.38134 -10.35122 -10.22546 -10.15117 -9.87139 -9.67743 -9.49606 -9.45057 -9.09940 -8.88734 -8.45578 -6.97375 -5.77974 -3.06626 -0.28834 0.53125 1.33832 2.51706 2.94413 2.96190 3.42712 3.48793 3.50673 3.75067 3.88077 4.15353 4.30662 4.33325 4.49889 4.56864 4.66092 4.80713 4.88550 4.95738 5.05348 5.12073 5.24976 5.30078 5.40191 5.48358 5.57953 5.60328 5.64744 5.68826 5.77029 5.84826 5.94622 5.99393 6.01217 6.11407 6.13427 6.18132 6.28538 6.30551 6.47556 6.50549 6.52830 6.59886 6.70718 6.94865 7.10709 7.36623 7.51109 7.70479 8.05894 8.40708 9.52019 10.09071 10.43736 11.44788 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.002138 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.502974 B =13095.299693 C =13597.340960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.090 0.910 17 N -0.715 5.715 18 C 0.567 3.433 19 O -0.534 6.534 20 C -0.172 4.172 21 C 0.122 3.878 22 N -0.497 5.497 23 C 0.175 3.825 24 C -0.122 4.122 25 C -0.090 4.090 26 C -0.119 4.119 27 C -0.098 4.098 28 C -0.110 4.110 29 C 0.012 3.988 30 C -0.130 4.130 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.399 0.601 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.166 0.834 46 H 0.065 0.935 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -28.127 -6.327 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.109 0.891 17 N -0.364 5.364 18 C 0.354 3.646 19 O -0.412 6.412 20 C -0.178 4.178 21 C -0.023 4.023 22 N -0.204 5.204 23 C 0.004 3.996 24 C -0.124 4.124 25 C -0.110 4.110 26 C -0.137 4.137 27 C -0.117 4.117 28 C -0.128 4.128 29 C 0.007 3.993 30 C -0.169 4.169 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.234 0.766 40 H 0.176 0.824 41 H 0.184 0.816 42 H 0.153 0.847 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.183 0.817 46 H 0.084 0.916 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.228 -27.744 -6.235 28.462 hybrid contribution 0.425 0.857 0.027 0.956 sum 1.653 -26.887 -6.208 27.644 Atomic orbital electron populations 1.69665 1.05096 1.25525 1.57887 1.24741 0.95524 0.97695 1.03096 0.86134 0.78831 0.84187 0.77164 1.20536 1.21900 1.21904 1.19285 0.91045 0.84034 1.42384 0.91087 1.42409 1.05757 0.99708 1.88598 1.20092 0.94087 0.85506 0.92979 0.93327 1.22296 0.99744 0.95244 1.00473 1.21484 0.98502 0.95330 0.99971 1.21887 1.00215 0.98897 0.95265 1.21111 0.94450 0.85846 0.94069 0.89148 1.46104 1.10628 1.20933 1.58784 1.17796 0.87475 0.81464 0.77867 1.90633 1.14073 1.77817 1.58699 1.21961 0.94856 0.96567 1.04373 1.22796 0.89048 0.96551 0.93870 1.67120 1.40944 1.02215 1.10087 1.23315 0.92002 0.93411 0.90910 1.19025 0.94848 0.96392 1.02179 1.20964 0.95777 0.96043 0.98201 1.21009 0.93553 0.99520 0.99603 1.21211 1.00485 0.93642 0.96391 1.21835 0.94629 0.98570 0.97721 1.18921 0.94035 0.91757 0.94608 1.22120 0.99402 0.93259 1.02145 0.93587 0.78324 0.91854 0.92626 0.92467 0.92138 0.91989 0.92128 0.76622 0.82366 0.81645 0.84733 0.85476 0.85315 0.81663 0.91598 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.66 5.12 -53.42 -0.27 -17.93 16 10 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.37 5.50 -26.73 -0.15 -2.52 16 13 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 14 C -0.12 -1.63 5.49 -26.73 -0.15 -1.78 16 15 C 0.15 2.03 2.46 -67.90 -0.17 1.86 16 16 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 17 N -0.71 -8.36 5.03 -54.85 -0.28 -8.64 16 18 C 0.57 7.38 7.74 -12.51 -0.10 7.29 16 19 O -0.53 -8.26 13.40 5.28 0.07 -8.19 16 20 C -0.17 -2.00 6.07 -102.66 -0.62 -2.62 16 21 C 0.12 1.24 10.71 -17.13 -0.18 1.06 16 22 N -0.50 -5.11 10.22 -12.58 -0.13 -5.24 16 23 C 0.18 1.46 11.00 -17.01 -0.19 1.27 16 24 C -0.12 -1.12 5.74 -106.89 -0.61 -1.73 16 25 C -0.09 -0.61 9.82 -39.49 -0.39 -1.00 16 26 C -0.12 -0.80 9.94 -39.91 -0.40 -1.20 16 27 C -0.10 -0.82 9.96 -39.84 -0.40 -1.21 16 28 C -0.11 -1.22 9.33 -39.68 -0.37 -1.59 16 29 C 0.01 0.14 5.91 -104.74 -0.62 -0.48 16 30 C -0.13 -2.01 4.86 -26.70 -0.13 -2.14 16 31 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 3.73 6.70 -40.82 -0.27 3.45 16 40 H 0.16 1.24 6.44 -52.49 -0.34 0.91 16 41 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.17 2.08 5.24 -52.49 -0.28 1.81 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -32.88 381.69 -10.85 -43.72 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.64 Total: 10.79 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -5.06 Total: -10.36 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.05 Total: -59.01 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.07 Total: -8.19 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.88 -10.85 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981540096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.718 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds