Wall clock time and date at job start Tue Mar 31 2020 23:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00393 * 2 1 4 4 H 1.48495 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47241 * 300.00534 * 3 2 1 6 6 H 1.48504 * 109.46809 * 60.00201 * 3 2 1 7 7 C 1.38813 * 119.99475 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99776 * 194.64844 * 7 2 1 9 9 N 1.36934 * 120.00385 * 14.64823 * 7 2 1 10 10 C 1.43468 * 118.94245 * 204.95935 * 9 7 2 11 11 C 1.53796 * 107.96284 * 273.62897 * 10 9 7 12 12 C 1.47140 * 111.84273 * 281.67359 * 11 10 9 13 13 N 1.48210 * 110.34325 * 58.29471 * 12 11 10 14 14 C 1.34776 * 119.96838 * 102.46839 * 13 12 11 15 15 O 1.21279 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99920 * 179.97438 * 14 13 12 17 17 C 1.50695 * 109.47350 * 179.97438 * 16 14 13 18 18 C 1.36169 * 120.19546 * 265.02508 * 17 16 14 19 19 C 1.39311 * 120.87014 * 179.97438 * 18 17 16 20 20 C 1.36108 * 121.06958 * 359.97438 * 19 18 17 21 21 C 1.40556 * 119.74591 * 359.97438 * 20 19 18 22 22 N 1.33695 * 121.08611 * 180.02562 * 21 20 19 23 23 C 1.31080 * 121.31935 * 179.97438 * 22 21 20 24 24 C 1.39333 * 121.75913 * 0.04737 * 23 22 21 25 25 C 1.36573 * 119.93442 * 359.92445 * 24 23 22 26 26 C 1.40394 * 120.19332 * 84.99941 * 17 16 14 27 27 C 1.43616 * 120.05716 * 282.74022 * 13 12 11 28 28 C 1.48860 * 118.93994 * 24.94192 * 9 7 2 29 29 H 0.97004 * 119.99570 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.75868 * 154.01381 * 10 9 7 31 31 H 1.08996 * 109.80180 * 33.27263 * 10 9 7 32 32 H 1.09002 * 109.00811 * 161.06313 * 11 10 9 33 33 H 1.09000 * 108.94474 * 42.23974 * 11 10 9 34 34 H 1.09001 * 109.32221 * 298.03232 * 12 11 10 35 35 H 1.08999 * 109.18552 * 178.47521 * 12 11 10 36 36 H 1.08997 * 109.46741 * 59.99920 * 16 14 13 37 37 H 1.08997 * 109.47043 * 300.00252 * 16 14 13 38 38 H 1.08007 * 119.56783 * 359.97438 * 18 17 16 39 39 H 1.08001 * 119.46609 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.13053 * 179.97438 * 20 19 18 41 41 H 1.07998 * 119.11859 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.03109 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.92157 * 180.31977 * 25 24 23 44 44 H 1.09000 * 108.87463 * 211.19478 * 27 13 12 45 45 H 1.08998 * 108.87642 * 329.63637 * 27 13 12 46 46 H 1.09001 * 109.47882 * 260.60522 * 28 9 7 47 47 H 1.08998 * 109.48228 * 20.61926 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2123 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0639 -1.2176 0.2360 9 7 1.3588 -2.3687 -0.3009 10 6 1.8823 -3.6058 0.2030 11 6 2.9391 -4.1140 -0.7921 12 6 2.3233 -4.7452 -1.9699 13 7 1.4278 -3.7864 -2.6593 14 6 1.8373 -3.1752 -3.7886 15 8 2.9379 -3.4104 -4.2405 16 6 0.9271 -2.2005 -4.4904 17 6 1.6177 -1.6618 -5.7167 18 6 2.2971 -0.4831 -5.6578 19 6 2.9411 0.0276 -6.7826 20 6 2.9107 -0.6352 -7.9710 21 6 2.2206 -1.8556 -8.0714 22 7 2.1739 -2.5293 -9.2252 23 6 1.5321 -3.6680 -9.3239 24 6 0.8677 -4.2319 -8.2367 25 6 0.8762 -3.5959 -7.0282 26 6 1.5649 -2.3724 -6.9263 27 6 0.1264 -3.5035 -2.1218 28 6 0.1302 -2.3123 -1.1395 29 1 -0.4850 0.8401 0.0004 30 1 1.0786 -4.3367 0.2924 31 1 2.3420 -3.4424 1.1776 32 1 3.5767 -4.8426 -0.2914 33 1 3.5506 -3.2730 -1.1191 34 1 1.7462 -5.6139 -1.6531 35 1 3.1075 -5.0641 -2.6565 36 1 0.6881 -1.3773 -3.8172 37 1 0.0083 -2.7082 -4.7840 38 1 2.3373 0.0630 -4.7268 39 1 3.4731 0.9648 -6.7104 40 1 3.4150 -0.2251 -8.8335 41 1 1.5170 -4.1821 -10.2735 42 1 0.3472 -5.1714 -8.3495 43 1 0.3707 -4.0211 -6.1737 44 1 -0.5524 -3.2748 -2.9434 45 1 -0.2396 -4.3879 -1.6003 46 1 -0.7500 -2.3647 -0.4987 47 1 0.1158 -1.3781 -1.7010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981607754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:10 Heat of formation + Delta-G solvation = 53.289335 kcal Electronic energy + Delta-G solvation = -30277.063088 eV Core-core repulsion = 26425.606115 eV Total energy + Delta-G solvation = -3851.456972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96284 -39.68990 -37.40209 -36.75552 -34.28115 -34.09253 -32.84585 -31.21218 -30.82894 -30.48409 -28.02611 -27.27753 -25.35878 -24.20941 -23.72196 -23.55228 -22.34063 -20.71690 -19.80008 -18.50861 -18.06656 -17.16424 -17.04974 -16.91446 -16.26618 -15.90964 -15.13237 -14.75225 -14.47288 -14.34873 -14.21433 -13.87454 -13.71977 -13.66254 -13.47731 -13.07059 -13.02819 -12.73865 -12.52113 -12.31386 -11.99511 -11.71632 -11.59028 -11.47090 -11.39330 -11.14819 -11.04276 -10.82006 -10.56435 -10.46165 -10.28096 -10.21853 -9.90373 -9.74237 -9.51008 -9.37543 -8.71299 -8.53806 -8.09540 -8.08608 -6.76014 -5.85562 -3.26917 0.42684 0.88059 2.03192 2.94699 3.06497 3.31302 3.40839 3.43642 3.52922 4.16660 4.29289 4.45202 4.52451 4.74294 4.81156 4.89430 4.99913 5.06427 5.19765 5.21168 5.28499 5.34402 5.44339 5.51144 5.56782 5.62061 5.69609 5.75987 5.88150 5.90825 5.99508 6.01434 6.05809 6.10052 6.12423 6.25805 6.41010 6.44667 6.49366 6.52668 6.63584 6.78416 6.87240 6.91912 7.01186 7.30855 7.42070 7.75497 7.90136 7.92904 8.37809 8.63184 9.14962 9.82386 10.27407 11.22457 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.004087 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.315388 B = 6849.384605 C = 8178.109841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.004 3.996 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.170 4.170 12 C 0.131 3.869 13 N -0.584 5.584 14 C 0.524 3.476 15 O -0.547 6.547 16 C -0.109 4.109 17 C -0.032 4.032 18 C -0.104 4.104 19 C -0.091 4.091 20 C -0.103 4.103 21 C 0.126 3.874 22 N -0.477 5.477 23 C 0.125 3.875 24 C -0.182 4.182 25 C -0.050 4.050 26 C -0.084 4.084 27 C 0.078 3.922 28 C 0.163 3.837 29 H 0.253 0.747 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -7.750 -12.576 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.194 4.194 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.034 3.966 11 C -0.211 4.211 12 C 0.009 3.991 13 N -0.316 5.316 14 C 0.312 3.688 15 O -0.426 6.426 16 C -0.148 4.148 17 C -0.033 4.033 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.122 4.122 21 C 0.005 3.995 22 N -0.185 5.185 23 C -0.048 4.048 24 C -0.202 4.202 25 C -0.076 4.076 26 C -0.085 4.085 27 C -0.048 4.048 28 C 0.037 3.963 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.173 0.827 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.778 -7.311 -13.469 15.345 hybrid contribution -0.061 0.577 0.976 1.135 sum -0.839 -6.734 -12.493 14.217 Atomic orbital electron populations 1.70017 1.05049 1.25281 1.55075 1.24937 0.95295 0.98104 1.01044 0.86307 0.79512 0.84188 0.77373 1.20329 1.21500 1.21714 1.19234 0.92162 0.84853 1.41741 0.91758 1.43654 1.29028 1.01999 1.56576 1.20281 0.93661 0.88354 0.94275 1.21876 1.00817 1.00732 0.97693 1.20531 0.93593 0.90388 0.94577 1.47374 1.17106 1.43068 1.24022 1.20187 0.87319 0.80645 0.80670 1.90663 1.21641 1.63681 1.66578 1.20799 0.98367 1.00411 0.95238 1.19151 0.97419 0.94208 0.92567 1.20913 0.96336 0.95890 0.99048 1.20892 0.98068 0.99829 0.92256 1.20717 0.99569 0.93454 0.98464 1.18806 0.96855 0.95280 0.88536 1.68012 1.17278 1.07896 1.25274 1.22869 0.92013 0.91416 0.98530 1.21811 1.02479 1.01844 0.94062 1.21459 0.95296 0.93044 0.97786 1.18611 0.99577 0.95892 0.94463 1.22138 0.83191 1.01103 0.98355 1.21846 0.88959 0.94655 0.90792 0.93717 0.94860 0.93635 0.92695 0.91336 0.92163 0.90580 0.86640 0.88376 0.85097 0.85212 0.84973 0.82711 0.84779 0.84891 0.91700 0.91983 0.93945 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.51 10.90 55.49 0.60 -23.90 16 2 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 3 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.52 9.27 -15.06 -0.14 -6.66 16 8 H 0.06 1.72 7.87 -52.48 -0.41 1.30 16 9 N -0.59 -13.54 2.54 -172.29 -0.44 -13.98 16 10 C 0.16 3.17 5.63 -5.23 -0.03 3.14 16 11 C -0.17 -3.00 5.64 -29.13 -0.16 -3.16 16 12 C 0.13 2.11 5.70 -5.91 -0.03 2.08 16 13 N -0.58 -9.92 2.47 -176.97 -0.44 -10.35 16 14 C 0.52 9.42 7.66 -10.98 -0.08 9.33 16 15 O -0.55 -11.57 15.47 5.56 0.09 -11.48 16 16 C -0.11 -1.66 3.79 -29.04 -0.11 -1.77 16 17 C -0.03 -0.51 4.38 -104.56 -0.46 -0.96 16 18 C -0.10 -1.60 9.58 -39.93 -0.38 -1.98 16 19 C -0.09 -1.23 9.94 -39.95 -0.40 -1.62 16 20 C -0.10 -1.44 9.98 -39.47 -0.39 -1.83 16 21 C 0.13 1.94 6.60 -84.86 -0.56 1.38 16 22 N -0.48 -6.91 10.34 -10.98 -0.11 -7.03 16 23 C 0.12 1.44 11.14 -17.46 -0.19 1.25 16 24 C -0.18 -2.00 10.03 -39.78 -0.40 -2.39 16 25 C -0.05 -0.65 9.36 -39.23 -0.37 -1.02 16 26 C -0.08 -1.28 5.74 -106.80 -0.61 -1.89 16 27 C 0.08 1.24 5.01 -4.84 -0.02 1.22 16 28 C 0.16 3.40 5.17 -2.01 -0.01 3.39 16 29 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.03 0.59 7.58 -51.93 -0.39 0.20 16 31 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 34 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 35 H 0.08 1.28 7.12 -51.93 -0.37 0.91 16 36 H 0.12 1.86 7.21 -51.93 -0.37 1.49 16 37 H 0.10 1.21 5.97 -51.93 -0.31 0.90 16 38 H 0.13 2.01 8.05 -52.48 -0.42 1.58 16 39 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.53 6.57 -52.48 -0.34 1.19 16 44 H 0.06 0.87 6.38 -51.93 -0.33 0.54 16 45 H 0.06 0.90 7.73 -51.93 -0.40 0.50 16 46 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 47 H 0.08 1.78 5.72 -51.93 -0.30 1.48 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -32.01 373.08 -10.72 -42.73 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.57 Total: 3.79 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -4.45 Total: -1.48 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.38 Total: -55.26 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.01 -10.72 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981607754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.020 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds