Wall clock time and date at job start Tue Mar 31 2020 23:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21650 * 120.00456 * 180.02562 * 16 15 14 18 18 C 1.47056 * 119.99940 * 0.02562 * 16 15 14 19 19 C 1.35871 * 125.43101 * 179.68883 * 18 16 15 20 20 C 1.41588 * 107.72554 * 179.88253 * 19 18 16 21 21 C 1.40103 * 133.37774 * 180.15083 * 20 19 18 22 22 C 1.36447 * 119.83133 * 180.26932 * 21 20 19 23 23 C 1.38941 * 120.61189 * 0.02562 * 22 21 20 24 24 C 1.37672 * 120.65167 * 359.97373 * 23 22 21 25 25 C 1.39227 * 119.80868 * 0.02562 * 24 23 22 26 26 N 1.37479 * 133.18033 * 180.02562 * 25 24 23 27 27 H 0.97001 * 125.60393 * 359.94978 * 26 25 24 28 28 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 29 29 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 30 30 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 31 31 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 32 32 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 33 33 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 34 34 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 35 35 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 36 36 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 37 37 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 38 38 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 39 39 H 1.07995 * 126.14095 * 0.03360 * 19 18 16 40 40 H 1.08004 * 120.08385 * 0.30088 * 21 20 19 41 41 H 1.07993 * 119.69270 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.67252 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.09745 * 180.02562 * 24 23 22 44 44 H 1.08997 * 113.79514 * 221.44885 * 28 15 14 45 45 H 1.08994 * 113.79584 * 89.97354 * 28 15 14 46 46 H 1.09002 * 109.63459 * 248.30727 * 29 9 7 47 47 H 1.09000 * 109.64288 * 8.91958 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2035 -7.8471 2.4946 18 6 5.3107 -6.1249 3.6079 19 6 6.0827 -6.8804 4.4320 20 6 6.8647 -5.9996 5.2177 21 6 7.8258 -6.1980 6.2176 22 6 8.4196 -5.1225 6.8113 23 6 8.0800 -3.8291 6.4341 24 6 7.1386 -3.6081 5.4541 25 6 6.5187 -4.6893 4.8335 26 7 5.5659 -4.7884 3.8474 27 1 5.1426 -4.0426 3.3942 28 6 2.6137 -5.9569 0.8092 29 6 1.8061 -3.6627 0.0013 30 1 -0.4849 -0.8358 -0.0839 31 1 0.2917 -1.2069 1.8678 32 1 -0.5551 -2.6052 1.1597 33 1 0.0287 -3.0912 3.4924 34 1 1.7352 -2.7012 3.1675 35 1 0.1333 -4.9470 1.8567 36 1 1.3747 -5.1502 3.1167 37 1 4.2501 -3.9002 1.0263 38 1 3.5755 -3.8085 2.7125 39 1 6.0990 -7.9593 4.4778 40 1 8.0964 -7.1997 6.5174 41 1 9.1605 -5.2780 7.5815 42 1 8.5592 -2.9889 6.9144 43 1 6.8817 -2.5991 5.1676 44 1 1.8842 -6.7388 1.0201 45 1 3.0271 -6.0191 -0.1974 46 1 0.9771 -4.0989 -0.5560 47 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982143972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:49 Heat of formation + Delta-G solvation = 81.660275 kcal Electronic energy + Delta-G solvation = -29487.922832 eV Core-core repulsion = 25637.696116 eV Total energy + Delta-G solvation = -3850.226716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.79328 -40.60616 -38.41748 -36.89177 -36.19820 -32.98323 -32.34180 -30.99402 -30.37858 -29.46789 -29.01107 -26.46070 -26.28033 -25.31667 -23.46858 -22.47812 -22.24562 -21.29132 -20.61786 -19.65288 -18.29576 -17.72561 -17.47731 -17.33349 -16.10322 -15.96534 -15.80907 -14.85557 -14.71523 -14.55013 -14.28993 -14.13107 -13.94359 -13.82335 -13.67414 -13.55173 -13.27906 -13.12148 -12.90806 -12.52116 -12.12489 -11.96081 -11.92224 -11.77647 -11.58446 -11.19023 -11.10471 -10.83042 -10.59220 -10.42076 -10.20817 -10.12618 -10.07923 -10.05292 -9.89227 -9.38429 -8.82649 -8.47540 -8.41722 -7.95303 -7.00806 -6.18112 -3.36260 0.60507 1.43637 1.96718 2.61270 2.81456 3.25638 3.42995 3.44980 3.57644 3.71976 4.17858 4.36485 4.49362 4.53255 4.81714 4.84597 4.91028 4.99501 5.13008 5.17959 5.19903 5.25222 5.33867 5.35478 5.39964 5.48211 5.49494 5.58447 5.62945 5.71551 5.77676 5.79838 5.84230 6.01273 6.14309 6.25473 6.29357 6.33952 6.36029 6.42737 6.46150 6.49748 6.52876 6.57037 6.89420 6.94527 7.08681 7.20250 7.54991 7.86975 7.98776 8.45906 8.98083 9.71667 10.15807 11.10356 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.003336 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.054576 B = 8391.889419 C =10099.921305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.021 4.021 3 Si 1.067 2.933 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.353 4.353 8 H 0.057 0.943 9 N -0.595 5.595 10 C 0.148 3.852 11 C -0.136 4.136 12 C -0.085 4.085 13 C -0.097 4.097 14 C 0.110 3.890 15 N -0.639 5.639 16 C 0.601 3.399 17 O -0.531 6.531 18 C 0.028 3.972 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.063 4.063 22 C -0.151 4.151 23 C -0.091 4.091 24 C -0.130 4.130 25 C 0.110 3.890 26 N -0.576 5.576 27 H 0.420 0.580 28 C 0.118 3.882 29 C 0.163 3.837 30 H 0.271 0.729 31 H 0.081 0.919 32 H 0.017 0.983 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.025 0.975 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.809 -9.662 10.257 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.224 4.224 3 Si 0.897 3.103 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.482 4.482 8 H 0.074 0.926 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.175 4.175 12 C -0.122 4.122 13 C -0.100 4.100 14 C -0.012 4.012 15 N -0.374 5.374 16 C 0.390 3.610 17 O -0.409 6.409 18 C -0.082 4.082 19 C -0.141 4.141 20 C -0.124 4.124 21 C -0.081 4.081 22 C -0.170 4.170 23 C -0.110 4.110 24 C -0.151 4.151 25 C 0.000 4.000 26 N -0.183 5.183 27 H 0.262 0.738 28 C -0.004 4.004 29 C 0.036 3.964 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.043 0.957 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.560 -8.673 10.224 17.703 hybrid contribution 0.057 -1.217 -0.337 1.264 sum 11.617 -9.890 9.888 18.181 Atomic orbital electron populations 1.70724 1.06667 1.30504 1.47416 1.25825 0.96493 1.01458 0.98596 0.83504 0.74335 0.75677 0.76799 1.21849 1.22043 1.21645 1.19963 0.97469 0.88246 1.42481 0.92561 1.44101 1.46527 1.00848 1.40398 1.20855 0.90400 0.99464 0.87091 1.21994 1.00839 0.95136 0.99517 1.21139 0.97070 0.97717 0.96317 1.22577 0.93959 0.94375 0.99085 1.23397 0.97690 0.79215 1.00913 1.50100 1.41065 1.08322 1.37896 1.16858 0.78799 0.85293 0.80006 1.90828 1.66662 1.13952 1.69420 1.20158 1.02725 0.83105 1.02229 1.20866 0.97279 0.99469 0.96511 1.18208 1.01260 0.92114 1.00817 1.20392 0.94376 0.99208 0.94157 1.20628 1.02059 0.92390 1.01917 1.20874 0.96616 0.97236 0.96309 1.20142 0.99310 0.96607 0.99000 1.18404 0.93195 0.95841 0.92583 1.42438 1.35421 1.07057 1.33412 0.73839 1.23287 0.88212 0.97916 0.90979 1.20789 0.98263 0.86171 0.91206 0.91837 0.90083 0.96467 0.92692 0.92621 0.91712 0.93043 0.88888 0.90687 0.82765 0.85824 0.85942 0.85554 0.85816 0.89872 0.89318 0.95681 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.87 12.39 55.49 0.69 -25.19 16 2 C -0.02 -0.56 4.69 -17.43 -0.08 -0.64 16 3 Si 1.07 23.86 29.99 -169.99 -5.10 18.76 16 4 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.35 -8.94 9.50 -15.06 -0.14 -9.09 16 8 H 0.06 1.43 7.94 -52.49 -0.42 1.01 16 9 N -0.60 -13.20 2.86 -172.75 -0.49 -13.69 16 10 C 0.15 3.13 4.62 -4.00 -0.02 3.11 16 11 C -0.14 -2.29 5.99 -26.80 -0.16 -2.45 16 12 C -0.08 -1.27 5.02 -26.83 -0.13 -1.41 16 13 C -0.10 -1.44 0.87 -154.43 -0.13 -1.57 16 14 C 0.11 1.52 6.30 -3.17 -0.02 1.50 16 15 N -0.64 -9.08 3.45 -181.90 -0.63 -9.71 16 16 C 0.60 9.41 8.03 -12.69 -0.10 9.31 16 17 O -0.53 -9.72 17.57 5.23 0.09 -9.62 16 18 C 0.03 0.39 6.92 -82.29 -0.57 -0.18 16 19 C -0.11 -1.52 10.53 -39.15 -0.41 -1.93 16 20 C -0.12 -1.49 6.16 -106.93 -0.66 -2.15 16 21 C -0.06 -0.64 10.06 -39.53 -0.40 -1.03 16 22 C -0.15 -1.35 9.97 -39.97 -0.40 -1.75 16 23 C -0.09 -0.83 10.01 -39.53 -0.40 -1.23 16 24 C -0.13 -1.38 10.08 -39.42 -0.40 -1.78 16 25 C 0.11 1.38 7.25 -83.97 -0.61 0.77 16 26 N -0.58 -7.35 5.96 -7.35 -0.04 -7.39 16 27 H 0.42 4.92 5.66 -40.82 -0.23 4.69 16 28 C 0.12 1.58 7.97 -3.18 -0.03 1.56 16 29 C 0.16 2.93 5.71 -3.81 -0.02 2.91 16 30 H 0.27 7.71 6.77 -40.82 -0.28 7.43 16 31 H 0.08 1.97 6.23 -51.93 -0.32 1.65 16 32 H 0.02 0.38 7.94 -51.93 -0.41 -0.04 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.96 7.37 -51.93 -0.38 0.57 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.75 8.02 -51.93 -0.42 0.34 16 37 H 0.09 1.26 7.97 -51.93 -0.41 0.85 16 38 H 0.08 1.01 5.71 -51.93 -0.30 0.71 16 39 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 45 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 46 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 1.08 7.78 -51.93 -0.40 0.67 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -30.49 375.50 -11.10 -41.58 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.59 Total: 5.66 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -4.68 Total: -6.06 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.48 Total: -55.98 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.10 Total: 18.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.49 -11.10 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982143972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.245 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds