Wall clock time and date at job start Tue Mar 31 2020 23:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21650 * 120.00456 * 180.02562 * 16 15 14 18 18 C 1.47056 * 119.99940 * 0.02562 * 16 15 14 19 19 C 1.35871 * 125.43101 * 179.68883 * 18 16 15 20 20 C 1.41588 * 107.72554 * 179.88253 * 19 18 16 21 21 C 1.40103 * 133.37774 * 180.15083 * 20 19 18 22 22 C 1.36447 * 119.83133 * 180.26932 * 21 20 19 23 23 C 1.38941 * 120.61189 * 0.02562 * 22 21 20 24 24 C 1.37672 * 120.65167 * 359.97373 * 23 22 21 25 25 C 1.39227 * 119.80868 * 0.02562 * 24 23 22 26 26 N 1.37479 * 133.18033 * 180.02562 * 25 24 23 27 27 H 0.97001 * 125.60393 * 359.94978 * 26 25 24 28 28 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 29 29 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 30 30 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 31 31 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 32 32 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 33 33 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 34 34 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 35 35 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 36 36 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 37 37 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 38 38 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 39 39 H 1.07995 * 126.14095 * 0.03360 * 19 18 16 40 40 H 1.08004 * 120.08385 * 0.30088 * 21 20 19 41 41 H 1.07993 * 119.69270 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.67252 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.09745 * 180.02562 * 24 23 22 44 44 H 1.08997 * 113.79514 * 221.44885 * 28 15 14 45 45 H 1.08994 * 113.79584 * 89.97354 * 28 15 14 46 46 H 1.09002 * 109.63459 * 248.30727 * 29 9 7 47 47 H 1.09000 * 109.64288 * 8.91958 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2035 -7.8471 2.4946 18 6 5.3107 -6.1249 3.6079 19 6 6.0827 -6.8804 4.4320 20 6 6.8647 -5.9996 5.2177 21 6 7.8258 -6.1980 6.2176 22 6 8.4196 -5.1225 6.8113 23 6 8.0800 -3.8291 6.4341 24 6 7.1386 -3.6081 5.4541 25 6 6.5187 -4.6893 4.8335 26 7 5.5659 -4.7884 3.8474 27 1 5.1426 -4.0426 3.3942 28 6 2.6137 -5.9569 0.8092 29 6 1.8061 -3.6627 0.0013 30 1 -0.4849 -0.8358 -0.0839 31 1 0.2917 -1.2069 1.8678 32 1 -0.5551 -2.6052 1.1597 33 1 0.0287 -3.0912 3.4924 34 1 1.7352 -2.7012 3.1675 35 1 0.1333 -4.9470 1.8567 36 1 1.3747 -5.1502 3.1167 37 1 4.2501 -3.9002 1.0263 38 1 3.5755 -3.8085 2.7125 39 1 6.0990 -7.9593 4.4778 40 1 8.0964 -7.1997 6.5174 41 1 9.1605 -5.2780 7.5815 42 1 8.5592 -2.9889 6.9144 43 1 6.8817 -2.5991 5.1676 44 1 1.8842 -6.7388 1.0201 45 1 3.0271 -6.0191 -0.1974 46 1 0.9771 -4.0989 -0.5560 47 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982143972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:48 Heat of formation + Delta-G solvation = 65.660321 kcal Electronic energy + Delta-G solvation = -29488.616642 eV Core-core repulsion = 25637.696116 eV Total energy + Delta-G solvation = -3850.920526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.75646 -41.75711 -39.66388 -37.77566 -37.71680 -34.63696 -33.20874 -32.46368 -31.83922 -30.41964 -29.97341 -27.57581 -27.54864 -27.10835 -24.46787 -24.06178 -23.11332 -22.44693 -21.87724 -20.73571 -19.57315 -19.30941 -18.75877 -18.31929 -17.15542 -17.13322 -16.72240 -16.31394 -15.94639 -15.88259 -15.48850 -15.44169 -15.21835 -14.94098 -14.87077 -14.74247 -14.64890 -14.15532 -14.01362 -13.85702 -13.50932 -13.34935 -13.01233 -12.78163 -12.64137 -12.59602 -12.55387 -12.06964 -11.88510 -11.87498 -11.83516 -11.73051 -11.42084 -11.26719 -11.09956 -10.95797 -10.42981 -9.98494 -9.27740 -8.89167 -8.81918 -8.20296 -5.36590 -0.29922 0.64261 1.00979 1.49695 1.61257 1.67470 1.82341 1.87174 2.16136 2.65968 2.92984 3.04779 3.20404 3.30950 3.58079 3.65620 3.69637 3.82759 4.05255 4.12344 4.17726 4.18465 4.21328 4.25281 4.34665 4.39950 4.45320 4.49787 4.52097 4.56461 4.66352 4.75749 4.82518 4.85299 4.89900 4.95821 4.99753 5.10878 5.13374 5.18711 5.30600 5.44437 5.48115 5.53661 5.63689 5.66799 5.88320 6.10834 6.30296 6.39286 6.43287 6.81721 7.07808 7.80056 8.25338 9.04953 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.003336 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.054576 B = 8391.889419 C =10099.921305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.075 4.075 3 Si 1.112 2.888 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.346 4.346 8 H 0.056 0.944 9 N -0.610 5.610 10 C 0.154 3.846 11 C -0.124 4.124 12 C -0.078 4.078 13 C -0.092 4.092 14 C 0.116 3.884 15 N -0.636 5.636 16 C 0.601 3.399 17 O -0.565 6.565 18 C 0.004 3.996 19 C -0.115 4.115 20 C -0.141 4.141 21 C -0.070 4.070 22 C -0.148 4.148 23 C -0.083 4.083 24 C -0.147 4.147 25 C 0.096 3.904 26 N -0.576 5.576 27 H 0.421 0.579 28 C 0.122 3.878 29 C 0.164 3.836 30 H 0.256 0.744 31 H 0.044 0.956 32 H 0.004 0.996 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.159 0.841 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.135 0.865 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.137 -9.949 11.880 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.271 4.271 3 Si 0.938 3.062 4 H -0.195 1.195 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.476 4.476 8 H 0.074 0.926 9 N -0.334 5.334 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.115 4.115 13 C -0.094 4.094 14 C -0.006 4.006 15 N -0.369 5.369 16 C 0.392 3.608 17 O -0.445 6.445 18 C -0.105 4.105 19 C -0.142 4.142 20 C -0.146 4.146 21 C -0.088 4.088 22 C -0.167 4.167 23 C -0.102 4.102 24 C -0.168 4.168 25 C -0.014 4.014 26 N -0.183 5.183 27 H 0.263 0.737 28 C 0.001 3.999 29 C 0.038 3.962 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.022 0.978 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.176 0.824 40 H 0.161 0.839 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.153 0.847 44 H 0.108 0.892 45 H 0.122 0.878 46 H 0.041 0.959 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.903 -8.978 11.846 20.353 hybrid contribution -0.585 -1.152 -0.788 1.513 sum 13.317 -10.130 11.059 20.057 Atomic orbital electron populations 1.70842 1.07708 1.29576 1.50687 1.27002 0.96532 1.04631 0.98957 0.82888 0.74492 0.72485 0.76337 1.19528 1.22418 1.21772 1.20211 0.97269 0.89305 1.40771 0.92611 1.44289 1.46474 1.01678 1.41003 1.20693 0.89899 0.98145 0.88392 1.21834 1.01176 0.95432 0.97834 1.21077 0.97412 0.96356 0.96682 1.22376 0.94487 0.94770 0.97777 1.23380 0.96895 0.79079 1.01262 1.50051 1.40802 1.08340 1.37727 1.17029 0.78794 0.84919 0.80063 1.90799 1.67930 1.15216 1.70572 1.19991 1.03595 0.83945 1.03013 1.21066 0.97018 0.99878 0.96279 1.18455 1.02304 0.91939 1.01874 1.20723 0.93758 1.00843 0.93520 1.21045 1.01898 0.91892 1.01881 1.21323 0.95342 0.98451 0.95083 1.20432 0.99956 0.96733 0.99668 1.18763 0.93328 0.96644 0.92693 1.42348 1.35715 1.06509 1.33708 0.73658 1.23341 0.88155 0.96825 0.91616 1.20865 0.98094 0.84690 0.92575 0.93438 0.93715 0.97823 0.91088 0.92716 0.91242 0.91900 0.88433 0.90180 0.82377 0.83902 0.82923 0.82651 0.84688 0.89186 0.87818 0.95875 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.13 12.39 21.65 0.27 -54.86 16 2 C -0.07 -3.99 4.69 84.86 0.40 -3.59 16 3 Si 1.11 48.35 29.99 68.60 2.06 50.41 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.35 -17.58 9.50 84.03 0.80 -16.78 16 8 H 0.06 2.80 7.94 -2.91 -0.02 2.78 16 9 N -0.61 -27.18 2.86 -700.46 -2.00 -29.18 16 10 C 0.15 6.66 4.62 86.19 0.40 7.05 16 11 C -0.12 -4.08 5.99 30.55 0.18 -3.90 16 12 C -0.08 -2.21 5.02 30.53 0.15 -2.06 16 13 C -0.09 -2.58 0.87 -52.04 -0.05 -2.63 16 14 C 0.12 3.04 6.30 86.30 0.54 3.58 16 15 N -0.64 -17.31 3.45 -847.64 -2.92 -20.23 16 16 C 0.60 18.52 8.03 86.56 0.70 19.21 16 17 O -0.57 -20.59 17.57 -4.19 -0.07 -20.66 16 18 C 0.00 0.11 6.92 39.91 0.28 0.39 16 19 C -0.12 -3.02 10.53 22.55 0.24 -2.78 16 20 C -0.14 -3.36 6.16 -21.36 -0.13 -3.50 16 21 C -0.07 -1.26 10.06 22.30 0.22 -1.03 16 22 C -0.15 -2.15 9.97 22.02 0.22 -1.93 16 23 C -0.08 -1.23 10.01 22.30 0.22 -1.01 16 24 C -0.15 -2.82 10.08 22.37 0.23 -2.60 16 25 C 0.10 2.29 7.25 39.14 0.28 2.57 16 26 N -0.58 -14.25 5.96 -177.18 -1.06 -15.31 16 27 H 0.42 9.54 5.66 -92.71 -0.52 9.02 16 28 C 0.12 3.08 7.97 86.30 0.69 3.76 16 29 C 0.16 5.78 5.71 86.20 0.49 6.28 16 30 H 0.26 15.17 6.77 -92.71 -0.63 14.54 16 31 H 0.04 2.25 6.23 -2.39 -0.01 2.23 16 32 H 0.00 0.17 7.94 -2.38 -0.02 0.15 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.82 7.37 -2.38 -0.02 1.80 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.70 8.02 -2.38 -0.02 1.68 16 37 H 0.10 2.50 7.97 -2.39 -0.02 2.48 16 38 H 0.08 2.04 5.71 -2.39 -0.01 2.03 16 39 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 45 H 0.10 2.32 8.09 -2.39 -0.02 2.30 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 2.16 7.78 -2.39 -0.02 2.14 16 Total: -1.00 -67.04 375.50 2.74 -64.30 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.61 Total: 24.49 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.86 Total: 1.05 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -5.72 Total: -119.58 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.66 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.06 Total: 50.41 kcal Total: -67.04 2.74 -64.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982143972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.958 kcal (2) G-P(sol) polarization free energy of solvation -67.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds