Wall clock time and date at job start Tue Mar 31 2020 23:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99723 * 2 1 4 4 H 1.48505 * 109.47125 * 269.99986 * 3 2 1 5 5 H 1.48497 * 109.47671 * 29.99991 * 3 2 1 6 6 H 1.48506 * 109.47231 * 150.00098 * 3 2 1 7 7 C 1.38813 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99671 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.47369 * 125.57743 * 0.03884 * 9 7 2 11 11 C 1.56222 * 104.46521 * 154.62535 * 10 9 7 12 12 C 1.54922 * 101.15228 * 38.11465 * 11 10 9 13 13 N 1.46493 * 112.33071 * 85.13052 * 12 11 10 14 14 C 1.34781 * 119.99980 * 64.36315 * 13 12 11 15 15 O 1.21668 * 119.99837 * 359.97438 * 14 13 12 16 16 C 1.46914 * 120.00170 * 179.97438 * 14 13 12 17 17 C 1.36381 * 126.76702 * 0.02987 * 16 14 13 18 18 N 1.35469 * 109.76957 * 180.26172 * 17 16 14 19 19 H 0.96996 * 124.78994 * 179.69322 * 18 17 16 20 20 C 1.37970 * 110.42696 * 359.55551 * 18 17 16 21 21 C 1.39116 * 133.19066 * 180.12811 * 20 18 17 22 22 C 1.37758 * 119.93146 * 180.33329 * 21 20 18 23 23 C 1.38750 * 120.63697 * 0.02562 * 22 21 20 24 24 C 1.37758 * 120.30166 * 359.97438 * 23 22 21 25 25 C 1.39280 * 119.66772 * 359.97438 * 24 23 22 26 26 C 1.53582 * 109.57331 * 210.60920 * 12 11 10 27 27 C 1.54181 * 106.69498 * 112.45218 * 26 12 11 28 28 C 1.54758 * 104.36329 * 335.86396 * 27 26 12 29 29 C 1.46975 * 125.57900 * 179.97438 * 9 7 2 30 30 H 1.08995 * 111.81708 * 59.09868 * 29 9 7 31 31 H 0.97003 * 120.00267 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.36808 * 274.10915 * 10 9 7 33 33 H 1.09000 * 110.37528 * 36.32678 * 10 9 7 34 34 H 1.09000 * 112.19560 * 279.79969 * 11 10 9 35 35 H 1.09007 * 110.32422 * 155.62220 * 11 10 9 36 36 H 0.96997 * 120.00323 * 244.35785 * 13 12 11 37 37 H 1.08002 * 125.11244 * 359.97438 * 17 16 14 38 38 H 1.08000 * 120.03097 * 0.30881 * 21 20 18 39 39 H 1.07999 * 119.68385 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.85183 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.16773 * 180.02562 * 24 23 22 42 42 H 1.08990 * 110.02049 * 232.60031 * 26 12 11 43 43 H 1.09000 * 110.01874 * 353.99367 * 26 12 11 44 44 H 1.08999 * 110.80207 * 216.92764 * 27 26 12 45 45 H 1.08992 * 110.09580 * 94.46087 * 27 26 12 46 46 H 1.08993 * 110.67681 * 278.89855 * 28 27 26 47 47 H 1.09004 * 110.81148 * 155.82998 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1411 -2.5313 -0.0008 11 6 -0.3960 -3.9299 -0.6485 12 6 0.7723 -4.7540 -0.0516 13 7 0.4500 -5.3009 1.2687 14 6 -0.5373 -6.2091 1.3992 15 8 -1.1611 -6.5743 0.4206 16 6 -0.8601 -6.7580 2.7232 17 6 -0.2544 -6.4482 3.9052 18 7 -0.8198 -7.1594 4.9100 19 1 -0.5525 -7.1105 5.8411 20 6 -1.8316 -7.9608 4.4226 21 6 -2.7060 -8.8610 5.0229 22 6 -3.6298 -9.5370 4.2565 23 6 -3.6987 -9.3301 2.8862 24 6 -2.8415 -8.4429 2.2732 25 6 -1.9032 -7.7519 3.0362 26 6 1.1927 -5.8459 -1.0464 27 6 2.6063 -5.4763 -1.5385 28 6 2.6990 -3.9462 -1.3260 29 6 1.9333 -3.7263 0.0005 30 1 2.5740 -3.8802 0.8688 31 1 -0.4851 0.8400 0.0004 32 1 -0.5268 -2.4948 1.0181 33 1 -0.5983 -1.7493 -0.6070 34 1 -0.3344 -3.8973 -1.7363 35 1 -1.3583 -4.3271 -0.3255 36 1 0.9472 -5.0095 2.0489 37 1 0.5573 -5.7453 4.0218 38 1 -2.6603 -9.0301 6.0886 39 1 -4.3070 -10.2346 4.7267 40 1 -4.4276 -9.8671 2.2974 41 1 -2.8973 -8.2832 1.2066 42 1 1.1981 -6.8179 -0.5533 43 1 0.5085 -5.8612 -1.8948 44 1 2.7258 -5.7229 -2.5935 45 1 3.3577 -5.9910 -0.9398 46 1 2.2127 -3.4139 -2.1435 47 1 3.7378 -3.6310 -1.2275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991657331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:48 Heat of formation + Delta-G solvation = 31.410194 kcal Electronic energy + Delta-G solvation = -29676.674937 eV Core-core repulsion = 25824.269213 eV Total energy + Delta-G solvation = -3852.405723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.40239 -41.32350 -39.17733 -37.85557 -35.99850 -34.68992 -33.33871 -32.91829 -31.47348 -30.46114 -29.80721 -28.40575 -27.39673 -25.72383 -24.24002 -23.88498 -22.67636 -22.27005 -21.49738 -20.40389 -20.10459 -19.07257 -18.85665 -17.58595 -17.30940 -16.89219 -16.74632 -16.38884 -16.15552 -15.75833 -15.34901 -15.24900 -14.98197 -14.84649 -14.72262 -14.50684 -14.31938 -13.84562 -13.59385 -13.44659 -13.16001 -12.89387 -12.76814 -12.65090 -12.64876 -12.56556 -12.30648 -12.01300 -11.93453 -11.87841 -11.67807 -11.51751 -11.43634 -11.21485 -10.71392 -10.70436 -10.69650 -9.89114 -9.26674 -8.84464 -8.73683 -7.70799 -5.16010 0.04002 0.59719 1.06637 1.49229 1.50859 1.59030 2.05825 2.29608 2.48773 2.54029 3.00161 3.38327 3.41446 3.67927 3.74625 3.88302 3.95395 3.98589 4.00028 4.22133 4.38143 4.38566 4.41939 4.47349 4.52173 4.60399 4.62355 4.67952 4.75865 4.79798 4.84772 4.95172 5.00712 5.11973 5.16893 5.21468 5.25660 5.34883 5.46568 5.50956 5.53626 5.54567 5.65905 5.67153 5.71583 5.76989 5.87779 6.15158 6.33164 6.55944 6.74939 7.14159 7.43569 7.82877 8.47622 9.30295 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.002991 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.406873 B = 9360.373069 C =10106.410527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.222 4.222 8 H 0.087 0.913 9 N -0.610 5.610 10 C 0.165 3.835 11 C -0.130 4.130 12 C 0.174 3.826 13 N -0.700 5.700 14 C 0.587 3.413 15 O -0.580 6.580 16 C -0.272 4.272 17 C 0.139 3.861 18 N -0.560 5.560 19 H 0.440 0.560 20 C 0.072 3.928 21 C -0.121 4.121 22 C -0.105 4.105 23 C -0.141 4.141 24 C -0.100 4.100 25 C -0.093 4.093 26 C -0.104 4.104 27 C -0.109 4.109 28 C -0.125 4.125 29 C 0.156 3.844 30 H 0.060 0.940 31 H 0.243 0.757 32 H -0.014 1.014 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.406 0.594 37 H 0.214 0.786 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 -19.667 12.063 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.351 4.351 8 H 0.105 0.895 9 N -0.334 5.334 10 C 0.040 3.960 11 C -0.170 4.170 12 C 0.087 3.913 13 N -0.350 5.350 14 C 0.377 3.623 15 O -0.461 6.461 16 C -0.282 4.282 17 C 0.004 3.996 18 N -0.163 5.163 19 H 0.281 0.719 20 C -0.033 4.033 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.160 4.160 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.165 4.165 29 C 0.049 3.951 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.004 0.996 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.242 0.758 37 H 0.231 0.769 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.109 -19.691 11.536 22.821 hybrid contribution 0.247 1.618 0.311 1.666 sum 0.138 -18.073 11.847 21.610 Atomic orbital electron populations 1.70074 1.06335 1.24655 1.59193 1.25594 0.96432 1.00910 1.03329 0.85091 0.77668 0.79397 0.77254 1.21711 1.22672 1.19118 1.19419 0.91040 0.83235 1.41370 0.89526 1.44682 1.01827 1.00546 1.86361 1.21844 0.84664 0.93756 0.95770 1.23344 0.97748 0.96640 0.99276 1.21411 0.94421 0.92387 0.83104 1.45603 1.36730 1.42840 1.09826 1.17529 0.78807 0.78045 0.87904 1.90711 1.52442 1.61987 1.40924 1.20080 1.06160 1.08926 0.93078 1.22571 0.96957 0.94406 0.85630 1.41494 1.28797 1.35045 1.10927 0.71857 1.18473 0.94439 0.98099 0.92325 1.20440 0.95652 0.96773 1.01203 1.21220 0.98382 0.99643 0.93119 1.21259 0.99733 0.99017 0.95948 1.20728 0.95087 0.96453 0.99572 1.19076 0.98050 0.99098 0.93517 1.22162 0.97446 0.97113 0.97573 1.22280 0.95787 0.94801 1.01790 1.22776 1.00134 0.96016 0.97563 1.22018 0.92339 0.83841 0.96874 0.92196 0.94695 0.99567 0.91302 0.91732 0.92775 0.75795 0.76949 0.82727 0.82337 0.84181 0.87578 0.91753 0.92478 0.90441 0.89999 0.93368 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.15 10.07 21.65 0.22 -56.93 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.98 45.16 29.55 68.60 2.03 47.18 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.22 -11.89 10.03 84.03 0.84 -11.04 16 8 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.61 -30.20 3.07 -661.07 -2.03 -32.23 16 10 C 0.16 8.50 5.96 87.33 0.52 9.02 16 11 C -0.13 -5.72 5.85 32.37 0.19 -5.53 16 12 C 0.17 6.34 0.71 5.19 0.00 6.35 16 13 N -0.70 -22.49 5.22 -419.47 -2.19 -24.68 16 14 C 0.59 20.36 6.95 86.51 0.60 20.96 16 15 O -0.58 -24.21 14.03 -4.25 -0.06 -24.27 16 16 C -0.27 -7.77 6.27 -19.01 -0.12 -7.89 16 17 C 0.14 2.58 11.33 83.70 0.95 3.53 16 18 N -0.56 -8.32 5.99 -187.07 -1.12 -9.44 16 19 H 0.44 2.81 8.96 -92.71 -0.83 1.98 16 20 C 0.07 1.50 7.26 38.91 0.28 1.78 16 21 C -0.12 -1.93 10.07 22.37 0.23 -1.70 16 22 C -0.10 -1.70 10.01 22.28 0.22 -1.47 16 23 C -0.14 -2.99 10.03 22.28 0.22 -2.77 16 24 C -0.10 -2.88 9.85 22.41 0.22 -2.66 16 25 C -0.09 -2.67 6.27 -20.08 -0.13 -2.80 16 26 C -0.10 -3.40 5.24 31.19 0.16 -3.23 16 27 C -0.11 -3.02 6.83 31.59 0.22 -2.80 16 28 C -0.12 -4.33 6.26 31.78 0.20 -4.13 16 29 C 0.16 6.04 3.59 46.23 0.17 6.21 16 30 H 0.06 2.16 7.99 -2.39 -0.02 2.14 16 31 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 32 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 33 H 0.07 4.09 5.82 -2.39 -0.01 4.08 16 34 H 0.06 2.84 7.65 -2.39 -0.02 2.82 16 35 H 0.05 2.48 6.82 -2.38 -0.02 2.47 16 36 H 0.41 10.78 7.38 -92.71 -0.68 10.09 16 37 H 0.21 2.31 7.38 -2.91 -0.02 2.29 16 38 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.11 3.51 7.45 -2.91 -0.02 3.49 16 42 H 0.06 2.08 7.40 -2.39 -0.02 2.06 16 43 H 0.06 1.99 7.41 -2.39 -0.02 1.97 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.05 1.92 8.11 -2.39 -0.02 1.90 16 47 H 0.07 2.24 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -76.95 372.50 1.59 -75.35 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.50 Total: 26.69 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.25 Total: -1.66 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -5.12 Total: -123.29 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.95 1.59 -75.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991657331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.763 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds