Wall clock time and date at job start Tue Mar 31 2020 23:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48500 * 109.47046 * 270.00033 * 3 2 1 5 5 H 1.48499 * 109.47105 * 30.00420 * 3 2 1 6 6 H 1.48505 * 109.47106 * 150.00480 * 3 2 1 7 7 C 1.38821 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.58065 * 0.02562 * 9 7 2 11 11 C 1.54858 * 104.82211 * 204.66888 * 10 9 7 12 12 C 1.54915 * 101.76866 * 322.93283 * 11 10 9 13 13 N 1.46501 * 112.32999 * 273.78263 * 12 11 10 14 14 C 1.34771 * 120.00404 * 295.64096 * 13 12 11 15 15 O 1.21672 * 119.99771 * 0.02562 * 14 13 12 16 16 C 1.46916 * 120.00428 * 180.02562 * 14 13 12 17 17 C 1.36373 * 126.76604 * 0.02562 * 16 14 13 18 18 N 1.35474 * 109.77091 * 180.02562 * 17 16 14 19 19 H 0.96994 * 124.78799 * 180.02562 * 18 17 16 20 20 C 1.37958 * 110.42438 * 0.02562 * 18 17 16 21 21 C 1.39121 * 133.18840 * 179.97438 * 20 18 17 22 22 C 1.37767 * 119.93166 * 180.02562 * 21 20 18 23 23 C 1.38758 * 120.63422 * 359.97438 * 22 21 20 24 24 C 1.37756 * 120.29909 * 0.03886 * 23 22 21 25 25 C 1.39281 * 119.67226 * 359.65067 * 24 23 22 26 26 C 1.53586 * 109.09116 * 148.11616 * 12 11 10 27 27 C 1.54402 * 106.75093 * 247.06032 * 26 12 11 28 28 C 1.54761 * 104.07426 * 24.70175 * 27 26 12 29 29 C 1.46977 * 125.57702 * 179.97438 * 9 7 2 30 30 H 1.08998 * 111.81485 * 301.92107 * 29 9 7 31 31 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.37426 * 323.51020 * 10 9 7 33 33 H 1.09004 * 110.36777 * 85.72700 * 10 9 7 34 34 H 1.08997 * 110.97182 * 81.05011 * 11 10 9 35 35 H 1.09000 * 110.97176 * 204.77829 * 11 10 9 36 36 H 0.97009 * 119.99599 * 115.64063 * 13 12 11 37 37 H 1.08009 * 125.11563 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.03361 * 0.02684 * 21 20 18 39 39 H 1.07994 * 119.68245 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.85186 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.16403 * 180.02562 * 24 23 22 42 42 H 1.08994 * 110.01917 * 6.22401 * 26 12 11 43 43 H 1.09000 * 110.01627 * 127.57375 * 26 12 11 44 44 H 1.09003 * 110.41899 * 266.11438 * 27 26 12 45 45 H 1.09004 * 110.64966 * 143.39971 * 27 26 12 46 46 H 1.09002 * 110.67220 * 203.89107 * 28 27 26 47 47 H 1.09001 * 110.66738 * 80.92326 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 -0.0005 11 6 -0.4032 -3.9238 0.6243 12 6 0.7720 -4.7540 0.0503 13 7 0.4651 -5.3163 -1.2672 14 6 -0.5202 -6.2264 -1.3986 15 8 -1.1551 -6.5807 -0.4230 16 6 -0.8276 -6.7908 -2.7197 17 6 -0.2079 -6.4951 -3.8980 18 7 -0.7660 -7.2132 -4.9021 19 1 -0.4911 -7.1715 -5.8313 20 6 -1.7804 -8.0121 -4.4165 21 6 -2.6490 -8.9181 -5.0166 22 6 -3.5829 -9.5839 -4.2534 23 6 -3.6678 -9.3609 -2.8865 24 6 -2.8168 -8.4674 -2.2739 25 6 -1.8635 -7.7923 -3.0324 26 6 1.1755 -5.8269 1.0725 27 6 2.5895 -5.4575 1.5707 28 6 2.6838 -3.9305 1.3371 29 6 1.9331 -3.7264 -0.0016 30 1 2.5871 -3.8736 -0.8611 31 1 -0.4850 0.8401 0.0004 32 1 -0.5987 -1.7507 0.6071 33 1 -0.5262 -2.4924 -1.0196 34 1 -0.3541 -3.8788 1.7122 35 1 -1.3619 -4.3249 0.2954 36 1 0.9711 -5.0335 -2.0451 37 1 0.6055 -5.7939 -4.0133 38 1 -2.5911 -9.0994 -6.0797 39 1 -4.2554 -10.2860 -4.7235 40 1 -4.4045 -9.8900 -2.3002 41 1 -2.8845 -8.2959 -1.2097 42 1 0.4765 -5.8272 1.9087 43 1 1.1895 -6.8080 0.5977 44 1 3.3471 -5.9804 0.9870 45 1 2.6962 -5.6887 2.6306 46 1 3.7243 -3.6188 1.2460 47 1 2.1898 -3.3869 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991657339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:53 Heat of formation + Delta-G solvation = 51.748955 kcal Electronic energy + Delta-G solvation = -29672.580131 eV Core-core repulsion = 25821.056362 eV Total energy + Delta-G solvation = -3851.523768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51845 -39.88246 -37.77050 -37.02859 -34.19357 -33.32901 -32.10475 -31.36776 -29.92395 -29.60782 -28.77940 -26.67129 -25.92777 -23.80783 -23.06636 -23.05516 -21.84233 -20.66558 -19.91851 -19.08191 -18.71680 -18.13359 -17.00991 -16.46216 -16.25099 -15.59359 -15.47257 -15.03499 -14.85790 -14.27738 -14.21033 -13.95653 -13.83038 -13.67659 -13.43718 -12.99077 -12.78883 -12.71275 -12.13072 -11.85145 -11.80574 -11.74061 -11.57099 -11.14277 -11.05439 -10.96620 -10.82075 -10.61418 -10.47229 -10.11986 -10.01851 -9.91630 -9.78966 -9.68052 -9.58539 -9.28692 -8.63828 -8.45820 -8.43250 -7.85530 -6.83138 -5.62815 -3.06036 0.90560 1.45201 2.02608 2.82433 3.39047 3.44347 3.46654 3.54253 3.58578 3.95760 4.48396 4.54853 4.61816 4.84751 4.97098 4.99216 5.09065 5.22809 5.35090 5.39452 5.45828 5.54593 5.56856 5.67951 5.70355 5.90799 5.92365 5.98761 6.07121 6.13227 6.20848 6.28259 6.35470 6.40007 6.42220 6.48854 6.53751 6.59694 6.61408 6.66210 6.84825 6.86830 6.98180 7.05728 7.18410 7.23801 7.59157 7.66793 7.90002 7.98676 8.39406 8.69123 9.23273 9.84371 10.49016 11.39428 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.002980 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.130983 B = 9394.664310 C =10123.219376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.596 5.596 10 C 0.153 3.847 11 C -0.141 4.141 12 C 0.165 3.835 13 N -0.704 5.704 14 C 0.588 3.412 15 O -0.539 6.539 16 C -0.219 4.219 17 C 0.105 3.895 18 N -0.581 5.581 19 H 0.419 0.581 20 C 0.084 3.916 21 C -0.131 4.131 22 C -0.101 4.101 23 C -0.146 4.146 24 C -0.060 4.060 25 C -0.062 4.062 26 C -0.109 4.109 27 C -0.125 4.125 28 C -0.130 4.130 29 C 0.161 3.839 30 H 0.045 0.955 31 H 0.251 0.749 32 H 0.107 0.893 33 H 0.009 0.991 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.394 0.606 37 H 0.179 0.821 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -18.004 -9.370 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.320 5.320 10 C 0.028 3.972 11 C -0.181 4.181 12 C 0.079 3.921 13 N -0.354 5.354 14 C 0.376 3.624 15 O -0.417 6.417 16 C -0.229 4.229 17 C -0.028 4.028 18 N -0.182 5.182 19 H 0.256 0.744 20 C -0.022 4.022 21 C -0.151 4.151 22 C -0.121 4.121 23 C -0.165 4.165 24 C -0.078 4.078 25 C -0.067 4.067 26 C -0.148 4.148 27 C -0.163 4.163 28 C -0.170 4.170 29 C 0.053 3.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.027 0.973 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.228 0.772 37 H 0.196 0.804 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.971 -17.974 -8.771 20.097 hybrid contribution 0.919 1.127 -1.076 1.809 sum -1.052 -16.847 -9.846 19.542 Atomic orbital electron populations 1.69812 1.04846 1.24659 1.57455 1.24781 0.95658 0.97627 1.02539 0.86114 0.78555 0.83601 0.77455 1.21791 1.21726 1.20739 1.19028 0.90406 0.82346 1.43031 0.90569 1.44537 1.01851 0.99176 1.86431 1.21957 0.84267 0.93042 0.97932 1.23321 0.96864 0.97959 0.99928 1.21567 0.96596 0.92194 0.81747 1.45719 1.36332 1.42784 1.10520 1.17124 0.79635 0.78643 0.87038 1.90745 1.50495 1.61075 1.39415 1.20216 1.03415 1.06042 0.93274 1.22155 0.98033 0.95799 0.86770 1.41502 1.30042 1.36419 1.10259 0.74413 1.18269 0.93362 0.97195 0.93325 1.19977 0.97145 0.98497 0.99491 1.20800 0.97888 0.99411 0.93969 1.20979 1.00632 1.00115 0.94732 1.20755 0.92635 0.93949 1.00491 1.18772 0.97597 0.98496 0.91812 1.22274 0.96516 0.97767 0.98270 1.22398 0.96491 0.97277 1.00115 1.22959 1.00283 0.93994 0.99740 1.21805 0.91676 0.85937 0.95293 0.93706 0.93785 0.87557 0.97328 0.91480 0.91490 0.77173 0.80365 0.86283 0.85775 0.85839 0.84758 0.91208 0.92210 0.92460 0.92278 0.92494 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 10.07 55.49 0.56 -25.98 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.22 -5.87 10.01 -15.06 -0.15 -6.03 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.54 3.03 -161.11 -0.49 -15.03 16 10 C 0.15 3.74 5.90 -2.59 -0.02 3.73 16 11 C -0.14 -2.95 5.75 -24.74 -0.14 -3.09 16 12 C 0.17 3.00 0.74 -129.37 -0.10 2.90 16 13 N -0.70 -11.31 5.23 -46.57 -0.24 -11.56 16 14 C 0.59 9.87 6.97 -12.75 -0.09 9.78 16 15 O -0.54 -10.59 14.04 5.21 0.07 -10.51 16 16 C -0.22 -3.11 6.27 -103.31 -0.65 -3.76 16 17 C 0.10 1.08 11.33 -16.62 -0.19 0.89 16 18 N -0.58 -5.18 5.99 -10.48 -0.06 -5.24 16 19 H 0.42 2.19 8.96 -40.82 -0.37 1.83 16 20 C 0.08 0.96 7.26 -83.97 -0.61 0.35 16 21 C -0.13 -1.26 10.07 -39.43 -0.40 -1.65 16 22 C -0.10 -0.96 10.01 -39.56 -0.40 -1.35 16 23 C -0.15 -1.58 10.03 -39.57 -0.40 -1.97 16 24 C -0.06 -0.81 9.85 -39.37 -0.39 -1.20 16 25 C -0.06 -0.88 6.27 -104.95 -0.66 -1.54 16 26 C -0.11 -1.82 5.23 -25.69 -0.13 -1.96 16 27 C -0.12 -1.89 6.85 -25.07 -0.17 -2.06 16 28 C -0.13 -2.35 6.20 -24.84 -0.15 -2.50 16 29 C 0.16 3.18 3.65 -65.57 -0.24 2.94 16 30 H 0.05 0.86 8.02 -51.93 -0.42 0.45 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.11 2.96 5.83 -51.93 -0.30 2.66 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 1.40 7.62 -51.93 -0.40 1.00 16 35 H 0.07 1.44 6.82 -51.93 -0.35 1.08 16 36 H 0.39 5.44 7.40 -40.82 -0.30 5.14 16 37 H 0.18 1.27 7.38 -52.48 -0.39 0.89 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.13 1.95 7.45 -52.49 -0.39 1.56 16 42 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 43 H 0.06 0.99 7.43 -51.93 -0.39 0.61 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -33.06 372.36 -11.15 -44.21 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.61 Total: 8.69 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -4.97 Total: -6.91 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.24 Total: -57.81 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.06 -11.15 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991657339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.959 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds