Wall clock time and date at job start Tue Mar 31 2020 23:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48500 * 109.47046 * 270.00033 * 3 2 1 5 5 H 1.48499 * 109.47105 * 30.00420 * 3 2 1 6 6 H 1.48505 * 109.47106 * 150.00480 * 3 2 1 7 7 C 1.38821 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.58065 * 0.02562 * 9 7 2 11 11 C 1.54858 * 104.82211 * 204.66888 * 10 9 7 12 12 C 1.54915 * 101.76866 * 322.93283 * 11 10 9 13 13 N 1.46501 * 112.32999 * 273.78263 * 12 11 10 14 14 C 1.34771 * 120.00404 * 295.64096 * 13 12 11 15 15 O 1.21672 * 119.99771 * 0.02562 * 14 13 12 16 16 C 1.46916 * 120.00428 * 180.02562 * 14 13 12 17 17 C 1.36373 * 126.76604 * 0.02562 * 16 14 13 18 18 N 1.35474 * 109.77091 * 180.02562 * 17 16 14 19 19 H 0.96994 * 124.78799 * 180.02562 * 18 17 16 20 20 C 1.37958 * 110.42438 * 0.02562 * 18 17 16 21 21 C 1.39121 * 133.18840 * 179.97438 * 20 18 17 22 22 C 1.37767 * 119.93166 * 180.02562 * 21 20 18 23 23 C 1.38758 * 120.63422 * 359.97438 * 22 21 20 24 24 C 1.37756 * 120.29909 * 0.03886 * 23 22 21 25 25 C 1.39281 * 119.67226 * 359.65067 * 24 23 22 26 26 C 1.53586 * 109.09116 * 148.11616 * 12 11 10 27 27 C 1.54402 * 106.75093 * 247.06032 * 26 12 11 28 28 C 1.54761 * 104.07426 * 24.70175 * 27 26 12 29 29 C 1.46977 * 125.57702 * 179.97438 * 9 7 2 30 30 H 1.08998 * 111.81485 * 301.92107 * 29 9 7 31 31 H 0.97003 * 120.00066 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.37426 * 323.51020 * 10 9 7 33 33 H 1.09004 * 110.36777 * 85.72700 * 10 9 7 34 34 H 1.08997 * 110.97182 * 81.05011 * 11 10 9 35 35 H 1.09000 * 110.97176 * 204.77829 * 11 10 9 36 36 H 0.97009 * 119.99599 * 115.64063 * 13 12 11 37 37 H 1.08009 * 125.11563 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.03361 * 0.02684 * 21 20 18 39 39 H 1.07994 * 119.68245 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.85186 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.16403 * 180.02562 * 24 23 22 42 42 H 1.08994 * 110.01917 * 6.22401 * 26 12 11 43 43 H 1.09000 * 110.01627 * 127.57375 * 26 12 11 44 44 H 1.09003 * 110.41899 * 266.11438 * 27 26 12 45 45 H 1.09004 * 110.64966 * 143.39971 * 27 26 12 46 46 H 1.09002 * 110.67220 * 203.89107 * 28 27 26 47 47 H 1.09001 * 110.66738 * 80.92326 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 -0.0005 11 6 -0.4032 -3.9238 0.6243 12 6 0.7720 -4.7540 0.0503 13 7 0.4651 -5.3163 -1.2672 14 6 -0.5202 -6.2264 -1.3986 15 8 -1.1551 -6.5807 -0.4230 16 6 -0.8276 -6.7908 -2.7197 17 6 -0.2079 -6.4951 -3.8980 18 7 -0.7660 -7.2132 -4.9021 19 1 -0.4911 -7.1715 -5.8313 20 6 -1.7804 -8.0121 -4.4165 21 6 -2.6490 -8.9181 -5.0166 22 6 -3.5829 -9.5839 -4.2534 23 6 -3.6678 -9.3609 -2.8865 24 6 -2.8168 -8.4674 -2.2739 25 6 -1.8635 -7.7923 -3.0324 26 6 1.1755 -5.8269 1.0725 27 6 2.5895 -5.4575 1.5707 28 6 2.6838 -3.9305 1.3371 29 6 1.9331 -3.7264 -0.0016 30 1 2.5871 -3.8736 -0.8611 31 1 -0.4850 0.8401 0.0004 32 1 -0.5987 -1.7507 0.6071 33 1 -0.5262 -2.4924 -1.0196 34 1 -0.3541 -3.8788 1.7122 35 1 -1.3619 -4.3249 0.2954 36 1 0.9711 -5.0335 -2.0451 37 1 0.6055 -5.7939 -4.0133 38 1 -2.5911 -9.0994 -6.0797 39 1 -4.2554 -10.2860 -4.7235 40 1 -4.4045 -9.8900 -2.3002 41 1 -2.8845 -8.2959 -1.2097 42 1 0.4765 -5.8272 1.9087 43 1 1.1895 -6.8080 0.5977 44 1 3.3471 -5.9804 0.9870 45 1 2.6962 -5.6887 2.6306 46 1 3.7243 -3.6188 1.2460 47 1 2.1898 -3.3869 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991657339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:52 Heat of formation + Delta-G solvation = 31.337803 kcal Electronic energy + Delta-G solvation = -29673.465225 eV Core-core repulsion = 25821.056362 eV Total energy + Delta-G solvation = -3852.408862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40360 -41.33608 -39.19234 -37.85486 -35.99270 -34.69014 -33.36196 -32.92029 -31.51972 -30.46170 -29.82158 -28.38845 -27.42261 -25.70393 -24.24116 -23.88467 -22.67594 -22.25943 -21.47644 -20.41191 -20.11883 -19.07487 -18.86946 -17.58501 -17.31110 -16.88734 -16.74587 -16.38935 -16.15700 -15.75661 -15.36291 -15.24752 -14.98683 -14.84527 -14.72407 -14.52300 -14.33494 -13.83803 -13.59409 -13.44820 -13.14958 -12.88995 -12.80842 -12.64949 -12.62545 -12.56853 -12.27277 -12.01942 -11.92794 -11.85870 -11.67595 -11.54007 -11.45624 -11.22529 -10.71616 -10.70236 -10.69334 -9.89388 -9.26643 -8.84061 -8.73707 -7.71003 -5.15944 0.04013 0.59699 1.06615 1.49142 1.50636 1.59248 2.05807 2.29228 2.48626 2.53974 3.00118 3.38167 3.41412 3.67967 3.74628 3.88327 3.95382 3.98819 4.00000 4.22149 4.37892 4.39129 4.41570 4.48541 4.51535 4.61366 4.62816 4.69896 4.76052 4.79763 4.84299 4.94990 5.00647 5.11850 5.16892 5.21650 5.25865 5.35175 5.46565 5.50803 5.53998 5.54730 5.65896 5.67407 5.71582 5.76957 5.87931 6.15163 6.33089 6.55970 6.74815 7.14117 7.43413 7.82888 8.47582 9.30346 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.002980 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.130983 B = 9394.664310 C =10123.219376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.267 1.267 7 C -0.222 4.222 8 H 0.087 0.913 9 N -0.610 5.610 10 C 0.165 3.835 11 C -0.130 4.130 12 C 0.175 3.825 13 N -0.699 5.699 14 C 0.587 3.413 15 O -0.580 6.580 16 C -0.272 4.272 17 C 0.139 3.861 18 N -0.560 5.560 19 H 0.440 0.560 20 C 0.072 3.928 21 C -0.121 4.121 22 C -0.105 4.105 23 C -0.141 4.141 24 C -0.100 4.100 25 C -0.093 4.093 26 C -0.104 4.104 27 C -0.109 4.109 28 C -0.125 4.125 29 C 0.155 3.845 30 H 0.063 0.937 31 H 0.243 0.757 32 H 0.069 0.931 33 H -0.017 1.017 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.406 0.594 37 H 0.214 0.786 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -19.822 -11.958 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.351 4.351 8 H 0.105 0.895 9 N -0.334 5.334 10 C 0.040 3.960 11 C -0.170 4.170 12 C 0.088 3.912 13 N -0.350 5.350 14 C 0.377 3.623 15 O -0.461 6.461 16 C -0.282 4.282 17 C 0.004 3.996 18 N -0.163 5.163 19 H 0.281 0.719 20 C -0.033 4.033 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.160 4.160 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.165 4.165 29 C 0.049 3.951 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.001 0.999 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.243 0.757 37 H 0.231 0.769 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.032 -19.837 -11.412 22.885 hybrid contribution 0.248 1.620 -0.351 1.676 sum 0.281 -18.217 -11.762 21.686 Atomic orbital electron populations 1.70077 1.06346 1.24654 1.59177 1.25598 0.96429 1.00917 1.03327 0.85090 0.77639 0.79395 0.77285 1.21505 1.22758 1.19225 1.19420 0.91035 0.83224 1.41383 0.89507 1.44710 1.01766 1.00583 1.86377 1.21581 0.84759 0.93837 0.95858 1.23120 0.97812 0.96567 0.99466 1.21375 0.94367 0.92230 0.83197 1.45589 1.36642 1.42619 1.10119 1.17533 0.78853 0.78067 0.87842 1.90713 1.51818 1.62484 1.41042 1.20075 1.06205 1.08712 0.93245 1.22574 0.96991 0.94343 0.85649 1.41492 1.28754 1.34937 1.11079 0.71855 1.18470 0.94407 0.98102 0.92351 1.20444 0.95660 0.96753 1.01218 1.21223 0.98279 0.99703 0.93158 1.21260 0.99844 0.98888 0.95972 1.20729 0.94941 0.96571 0.99601 1.19075 0.98025 0.99064 0.93579 1.22200 0.97464 0.97238 0.97356 1.22334 0.95744 0.94883 1.01722 1.22825 1.00138 0.96037 0.97518 1.22061 0.92349 0.83868 0.96859 0.91955 0.94699 0.91254 0.99915 0.91918 0.92648 0.75750 0.76921 0.82727 0.82342 0.84185 0.87579 0.92378 0.91848 0.89907 0.90485 0.91344 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.23 10.07 21.65 0.22 -57.01 16 2 C -0.07 -3.96 5.49 84.87 0.47 -3.49 16 3 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.22 -11.89 10.01 84.04 0.84 -11.05 16 8 H 0.09 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.61 -30.24 3.03 -663.62 -2.01 -32.25 16 10 C 0.16 8.51 5.90 86.85 0.51 9.03 16 11 C -0.13 -5.71 5.75 31.88 0.18 -5.53 16 12 C 0.18 6.40 0.74 5.19 0.00 6.40 16 13 N -0.70 -22.42 5.23 -419.47 -2.20 -24.61 16 14 C 0.59 20.32 6.97 86.52 0.60 20.92 16 15 O -0.58 -24.19 14.04 -4.26 -0.06 -24.25 16 16 C -0.27 -7.75 6.27 -19.02 -0.12 -7.87 16 17 C 0.14 2.57 11.33 83.70 0.95 3.52 16 18 N -0.56 -8.28 5.99 -187.08 -1.12 -9.40 16 19 H 0.44 2.77 8.96 -92.71 -0.83 1.94 16 20 C 0.07 1.50 7.26 38.92 0.28 1.78 16 21 C -0.12 -1.92 10.07 22.37 0.23 -1.70 16 22 C -0.10 -1.69 10.01 22.28 0.22 -1.47 16 23 C -0.14 -2.99 10.03 22.28 0.22 -2.77 16 24 C -0.10 -2.88 9.85 22.41 0.22 -2.65 16 25 C -0.09 -2.67 6.27 -20.08 -0.13 -2.79 16 26 C -0.10 -3.39 5.23 31.27 0.16 -3.23 16 27 C -0.11 -3.03 6.85 31.67 0.22 -2.81 16 28 C -0.13 -4.35 6.20 31.82 0.20 -4.15 16 29 C 0.16 6.01 3.65 46.26 0.17 6.18 16 30 H 0.06 2.24 8.02 -2.39 -0.02 2.22 16 31 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.07 4.12 5.83 -2.39 -0.01 4.11 16 33 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 34 H 0.06 2.76 7.62 -2.39 -0.02 2.75 16 35 H 0.05 2.54 6.82 -2.39 -0.02 2.53 16 36 H 0.41 10.71 7.40 -92.70 -0.69 10.03 16 37 H 0.21 2.27 7.38 -2.91 -0.02 2.25 16 38 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.11 3.51 7.45 -2.91 -0.02 3.48 16 42 H 0.06 2.03 7.37 -2.39 -0.02 2.01 16 43 H 0.06 2.05 7.43 -2.39 -0.02 2.03 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 Total: -1.00 -77.12 372.36 1.59 -75.53 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.50 Total: 26.47 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 5.23 Total: -1.69 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -5.11 Total: -123.27 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.06 Total: -24.25 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -77.12 1.59 -75.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991657339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.864 kcal (2) G-P(sol) polarization free energy of solvation -77.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds