Wall clock time and date at job start Tue Mar 31 2020 22:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46978 * 300.00034 * 3 2 1 6 6 H 1.48498 * 109.47135 * 59.99969 * 3 2 1 7 7 C 1.38810 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00106 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.47366 * 125.58070 * 0.02675 * 9 7 2 11 11 C 1.56220 * 104.46613 * 205.31787 * 10 9 7 12 12 C 1.54915 * 101.15131 * 321.87974 * 11 10 9 13 13 N 1.46500 * 112.33606 * 274.86929 * 12 11 10 14 14 C 1.34779 * 119.99944 * 295.63967 * 13 12 11 15 15 O 1.21578 * 119.99582 * 359.97438 * 14 13 12 16 16 C 1.47650 * 120.00075 * 180.02562 * 14 13 12 17 17 C 1.40211 * 119.97051 * 0.02562 * 16 14 13 18 18 C 1.36317 * 120.66582 * 179.97438 * 17 16 14 19 19 C 1.39372 * 120.23614 * 0.03890 * 18 17 16 20 20 N 1.37400 * 133.24203 * 180.02562 * 19 18 17 21 21 H 0.96994 * 125.01400 * 0.02562 * 20 19 18 22 22 C 1.36864 * 109.97542 * 179.97438 * 20 19 18 23 23 C 1.34194 * 109.96146 * 0.02562 * 22 20 19 24 24 C 1.40866 * 119.64285 * 359.97438 * 19 18 17 25 25 C 1.39149 * 119.97549 * 180.02562 * 16 14 13 26 26 C 1.53590 * 109.57198 * 149.38664 * 12 11 10 27 27 C 1.54175 * 106.69865 * 247.54962 * 26 12 11 28 28 C 1.54762 * 104.36525 * 24.13537 * 27 26 12 29 29 C 1.46984 * 125.57785 * 179.97438 * 9 7 2 30 30 H 1.09001 * 111.81214 * 300.95941 * 29 9 7 31 31 H 0.97006 * 120.00163 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.36871 * 323.50512 * 10 9 7 33 33 H 1.08995 * 110.36965 * 85.71877 * 10 9 7 34 34 H 1.09008 * 110.31906 * 204.37326 * 11 10 9 35 35 H 1.08999 * 112.19370 * 80.20288 * 11 10 9 36 36 H 0.96999 * 120.00058 * 115.64060 * 13 12 11 37 37 H 1.07998 * 119.67040 * 359.97438 * 17 16 14 38 38 H 1.08000 * 119.88334 * 180.02562 * 18 17 16 39 39 H 1.08002 * 125.01789 * 180.26678 * 22 20 19 40 40 H 1.07998 * 126.53701 * 180.02562 * 23 22 20 41 41 H 1.07999 * 120.29797 * 0.02562 * 25 16 14 42 42 H 1.08999 * 110.01625 * 6.01536 * 26 12 11 43 43 H 1.09001 * 110.01575 * 127.40152 * 26 12 11 44 44 H 1.08993 * 109.98424 * 265.59890 * 27 26 12 45 45 H 1.08998 * 110.91177 * 143.13155 * 27 26 12 46 46 H 1.08994 * 110.66633 * 204.23972 * 28 27 26 47 47 H 1.09000 * 110.81056 * 81.16611 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 -0.1413 -2.5313 0.0017 11 6 -0.3968 -3.9296 0.6498 12 6 0.7718 -4.7539 0.0543 13 7 0.4507 -5.3015 -1.2661 14 6 -0.5365 -6.2097 -1.3971 15 8 -1.1601 -6.5748 -0.4194 16 6 -0.8597 -6.7620 -2.7277 17 6 -0.1390 -6.3416 -3.8545 18 6 -0.4251 -6.8426 -5.0895 19 6 -1.4425 -7.7820 -5.2474 20 7 -1.9467 -8.4493 -6.3375 21 1 -1.6288 -8.3477 -7.2482 22 6 -2.9630 -9.2795 -5.9486 23 6 -3.1515 -9.1832 -4.6234 24 6 -2.1742 -8.2122 -4.1231 25 6 -1.8794 -7.6992 -2.8624 26 6 1.1914 -5.8454 1.0500 27 6 2.6047 -5.4757 1.5431 28 6 2.6976 -3.9456 1.3299 29 6 1.9331 -3.7264 0.0017 30 1 2.5739 -3.8804 -0.8665 31 1 -0.4851 0.8401 0.0004 32 1 -0.5987 -1.7501 0.6087 33 1 -0.5262 -2.4932 -1.0173 34 1 -1.3589 -4.3268 0.3261 35 1 -0.3362 -3.8964 1.7376 36 1 0.9486 -5.0105 -2.0460 37 1 0.6509 -5.6136 -3.7429 38 1 0.1384 -6.5103 -5.9488 39 1 -3.5271 -9.9205 -6.6099 40 1 -3.8828 -9.7199 -4.0373 41 1 -2.4374 -8.0254 -1.9971 42 1 0.5065 -5.8604 1.8978 43 1 1.1972 -6.8177 0.5573 44 1 3.3550 -5.9908 0.9435 45 1 2.7255 -5.7220 2.5980 46 1 3.7372 -3.6335 1.2313 47 1 2.2123 -3.4107 2.1463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992152740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:52 Heat of formation + Delta-G solvation = 34.797539 kcal Electronic energy + Delta-G solvation = -29484.703299 eV Core-core repulsion = 25632.444462 eV Total energy + Delta-G solvation = -3852.258837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.25228 -41.51632 -39.64940 -37.46275 -36.02552 -34.77701 -33.29903 -32.95885 -31.68517 -30.44319 -29.71593 -28.41579 -27.47886 -25.73698 -24.70213 -23.34076 -22.51001 -21.77115 -21.53401 -20.81893 -20.16960 -19.10977 -18.87042 -18.34178 -17.30834 -16.86621 -16.70836 -16.15322 -16.11397 -15.67160 -15.35058 -15.03710 -14.98275 -14.85435 -14.70990 -14.45730 -14.04144 -13.91143 -13.66680 -13.50106 -13.39273 -13.18455 -12.88539 -12.79935 -12.65781 -12.51735 -12.32688 -11.96816 -11.90560 -11.88516 -11.69040 -11.53354 -11.45234 -11.22612 -10.80114 -10.78116 -10.72441 -9.96260 -9.24405 -8.85221 -8.73073 -7.71596 -5.16829 -0.04415 0.26621 1.48943 1.49633 1.59758 1.80642 1.96583 2.18034 2.24035 2.52554 2.96914 3.37111 3.38876 3.66203 3.70798 3.83394 3.94606 3.96685 3.98487 4.18027 4.30202 4.38191 4.41396 4.42731 4.49003 4.58996 4.64426 4.70687 4.73156 4.82976 4.91419 4.96452 4.98357 5.08352 5.10934 5.18937 5.24411 5.32796 5.34490 5.42578 5.49979 5.53114 5.62089 5.66390 5.72252 5.74312 5.85700 6.08887 6.32364 6.62756 6.69967 7.13537 7.29681 7.81905 8.46602 9.29838 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.002921 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.215944 B = 9583.553145 C =10564.954475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.221 4.221 8 H 0.087 0.913 9 N -0.611 5.611 10 C 0.164 3.836 11 C -0.130 4.130 12 C 0.170 3.830 13 N -0.698 5.698 14 C 0.560 3.440 15 O -0.574 6.574 16 C -0.178 4.178 17 C -0.076 4.076 18 C -0.128 4.128 19 C 0.104 3.896 20 N -0.581 5.581 21 H 0.434 0.566 22 C 0.069 3.931 23 C -0.226 4.226 24 C -0.145 4.145 25 C -0.020 4.020 26 C -0.104 4.104 27 C -0.109 4.109 28 C -0.124 4.124 29 C 0.154 3.846 30 H 0.057 0.943 31 H 0.244 0.756 32 H 0.071 0.929 33 H -0.015 1.015 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.406 0.594 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.217 0.783 40 H 0.159 0.841 41 H 0.123 0.877 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -20.623 -13.499 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.350 4.350 8 H 0.104 0.896 9 N -0.335 5.335 10 C 0.039 3.961 11 C -0.169 4.169 12 C 0.083 3.917 13 N -0.348 5.348 14 C 0.350 3.650 15 O -0.455 6.455 16 C -0.182 4.182 17 C -0.096 4.096 18 C -0.148 4.148 19 C -0.006 4.006 20 N -0.184 5.184 21 H 0.274 0.726 22 C -0.057 4.057 23 C -0.250 4.250 24 C -0.150 4.150 25 C -0.039 4.039 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.164 4.164 29 C 0.047 3.953 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.003 0.997 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.243 0.757 37 H 0.159 0.841 38 H 0.173 0.827 39 H 0.233 0.767 40 H 0.177 0.823 41 H 0.141 0.859 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.813 -20.660 -12.972 24.409 hybrid contribution 0.216 1.574 -0.464 1.655 sum -0.597 -19.087 -13.436 23.349 Atomic orbital electron populations 1.70082 1.06332 1.24616 1.59225 1.25604 0.96466 1.00935 1.03309 0.85009 0.78292 0.79676 0.76368 1.18741 1.22374 1.22389 1.19456 0.91031 0.83222 1.41295 0.89556 1.44700 1.01861 1.00538 1.86359 1.21857 0.84652 0.93890 0.95748 1.23348 0.97648 0.96486 0.99453 1.21494 0.94639 0.92586 0.82975 1.45744 1.36493 1.42518 1.10077 1.18496 0.79064 0.78480 0.88946 1.90710 1.52132 1.61720 1.40947 1.19594 1.02253 1.03588 0.92788 1.20815 0.98792 0.98803 0.91196 1.19942 0.98230 0.98195 0.98436 1.18583 0.97246 0.96968 0.87798 1.41871 1.30962 1.36458 1.09151 0.72607 1.22511 0.91529 0.95650 0.95991 1.22056 1.03611 1.04088 0.95213 1.19474 1.00780 1.02283 0.92459 1.20657 0.94034 0.92835 0.96393 1.22175 0.97577 0.97011 0.97562 1.22283 0.95755 0.94744 1.01888 1.22778 1.00085 0.96080 0.97419 1.22052 0.92387 0.83924 0.96916 0.92502 0.94664 0.91148 0.99714 0.92596 0.91377 0.75679 0.84140 0.82710 0.76666 0.82329 0.85931 0.92116 0.91657 0.90112 0.90191 0.91304 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.58 10.07 21.65 0.22 -57.36 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 45.63 29.55 68.60 2.03 47.65 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 7 C -0.22 -12.01 10.03 84.03 0.84 -11.17 16 8 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.61 -30.72 3.06 -660.89 -2.02 -32.75 16 10 C 0.16 8.53 5.96 87.33 0.52 9.05 16 11 C -0.13 -5.70 5.85 32.37 0.19 -5.52 16 12 C 0.17 6.32 0.71 5.19 0.00 6.32 16 13 N -0.70 -23.51 5.18 -418.78 -2.17 -25.68 16 14 C 0.56 19.66 6.91 86.73 0.60 20.26 16 15 O -0.57 -23.54 14.20 -3.96 -0.06 -23.59 16 16 C -0.18 -5.27 5.87 -20.09 -0.12 -5.39 16 17 C -0.08 -1.80 9.46 22.30 0.21 -1.59 16 18 C -0.13 -2.45 10.00 22.09 0.22 -2.23 16 19 C 0.10 2.05 7.27 39.19 0.28 2.34 16 20 N -0.58 -6.82 6.05 -187.48 -1.13 -7.96 16 21 H 0.43 2.02 8.96 -92.71 -0.83 1.19 16 22 C 0.07 0.73 11.81 82.98 0.98 1.71 16 23 C -0.23 -3.91 11.09 23.52 0.26 -3.65 16 24 C -0.14 -3.47 6.36 -20.21 -0.13 -3.60 16 25 C -0.02 -0.56 9.64 22.74 0.22 -0.34 16 26 C -0.10 -3.41 5.24 31.19 0.16 -3.25 16 27 C -0.11 -3.04 6.83 31.59 0.22 -2.83 16 28 C -0.12 -4.34 6.27 31.81 0.20 -4.14 16 29 C 0.15 6.12 3.60 46.25 0.17 6.28 16 30 H 0.06 2.15 7.99 -2.39 -0.02 2.13 16 31 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 32 H 0.07 4.20 5.83 -2.39 -0.01 4.18 16 33 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.06 2.54 6.82 -2.38 -0.02 2.53 16 35 H 0.07 2.97 7.65 -2.39 -0.02 2.95 16 36 H 0.41 12.03 6.50 -92.71 -0.60 11.43 16 37 H 0.14 2.87 6.36 -2.91 -0.02 2.85 16 38 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.22 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 41 H 0.12 3.70 7.64 -2.91 -0.02 3.67 16 42 H 0.06 2.09 7.41 -2.39 -0.02 2.07 16 43 H 0.06 2.10 7.40 -2.39 -0.02 2.08 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 Total: -1.00 -75.19 371.40 1.74 -73.45 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.42 Total: 27.52 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.30 Total: -1.28 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -5.11 Total: -123.75 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.59 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.19 1.74 -73.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992152740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.246 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds