Wall clock time and date at job start Tue Mar 31 2020 22:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99596 * 2 1 4 4 H 1.48504 * 109.47420 * 89.99614 * 3 2 1 5 5 H 1.48497 * 109.47121 * 209.99388 * 3 2 1 6 6 H 1.48503 * 109.47559 * 329.99669 * 3 2 1 7 7 C 1.38805 * 119.99959 * 180.27044 * 2 1 3 8 8 H 1.08001 * 120.00476 * 23.51210 * 7 2 1 9 9 N 1.36945 * 119.99903 * 203.50817 * 7 2 1 10 10 C 1.47369 * 125.57634 * 14.44101 * 9 7 2 11 11 C 1.55092 * 104.70898 * 155.25718 * 10 9 7 12 12 C 1.54920 * 101.66878 * 37.35746 * 11 10 9 13 13 N 1.46505 * 112.33237 * 86.04717 * 12 11 10 14 14 C 1.34778 * 119.99741 * 64.35969 * 13 12 11 15 15 O 1.21595 * 119.99762 * 359.97438 * 14 13 12 16 16 C 1.47505 * 119.99780 * 180.02562 * 14 13 12 17 17 C 1.39343 * 120.20960 * 359.72221 * 16 14 13 18 18 C 1.38322 * 120.49655 * 179.72785 * 17 16 14 19 19 C 1.37907 * 120.58989 * 0.57251 * 18 17 16 20 20 C 1.39542 * 119.99137 * 359.70275 * 19 18 17 21 21 C 1.46567 * 133.95512 * 179.97438 * 20 19 18 22 22 C 1.34213 * 106.89154 * 180.02562 * 21 20 19 23 23 N 1.36897 * 109.88016 * 359.97438 * 22 21 20 24 24 H 0.97009 * 125.01296 * 180.02562 * 23 22 21 25 25 C 1.37123 * 109.97434 * 0.02562 * 23 22 21 26 26 C 1.53579 * 109.57206 * 211.52572 * 12 11 10 27 27 C 1.54225 * 106.67681 * 113.30109 * 26 12 11 28 28 C 1.56754 * 104.50469 * 335.25065 * 27 26 12 29 29 C 1.46975 * 125.58019 * 194.75248 * 9 7 2 30 30 H 1.09002 * 111.81613 * 59.02280 * 29 9 7 31 31 H 0.97003 * 119.99842 * 174.63859 * 1 2 3 32 32 H 1.09004 * 110.37062 * 274.17975 * 10 9 7 33 33 H 1.09000 * 110.37189 * 36.50986 * 10 9 7 34 34 H 1.08994 * 111.15574 * 279.21366 * 11 10 9 35 35 H 1.09001 * 110.90411 * 155.39182 * 11 10 9 36 36 H 0.96998 * 120.00106 * 244.36189 * 13 12 11 37 37 H 1.08000 * 119.75129 * 0.02562 * 17 16 14 38 38 H 1.08006 * 119.70231 * 180.30252 * 18 17 16 39 39 H 1.08007 * 120.00314 * 179.73121 * 19 18 17 40 40 H 1.08002 * 126.55751 * 359.97438 * 21 20 19 41 41 H 1.07995 * 125.05793 * 179.97438 * 22 21 20 42 42 H 1.09009 * 110.01811 * 232.60083 * 26 12 11 43 43 H 1.08996 * 110.01946 * 353.94958 * 26 12 11 44 44 H 1.09001 * 110.49140 * 93.72097 * 27 26 12 45 45 H 1.08990 * 110.49206 * 216.25613 * 27 26 12 46 46 H 1.09002 * 111.09610 * 279.18714 * 28 27 26 47 47 H 1.08999 * 111.11538 * 155.43477 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5477 1.4403 -0.6999 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0057 8 1 1.5376 -2.0968 -0.3830 9 7 3.2945 -1.2535 0.4672 10 6 3.9535 -0.2111 1.2739 11 6 5.0602 -0.9618 2.0593 12 6 5.5453 -1.9925 1.0094 13 7 6.5756 -1.4430 0.1246 14 6 7.7707 -1.0763 0.6284 15 8 7.9935 -1.2011 1.8172 16 6 8.8079 -0.5225 -0.2623 17 6 8.5588 -0.3820 -1.6261 18 6 9.5251 0.1418 -2.4659 19 6 10.7543 0.5225 -1.9699 20 6 11.0299 0.3864 -0.6087 21 6 12.1965 0.6825 0.2276 22 6 11.8738 0.3366 1.4836 23 7 10.5967 -0.1553 1.5175 24 1 10.1422 -0.4694 2.3148 25 6 10.0547 -0.1385 0.2580 26 6 6.0115 -3.2712 1.7209 27 6 5.0206 -4.3846 1.3248 28 6 3.7026 -3.6225 0.9515 29 6 4.2431 -2.3545 0.2477 30 1 4.4264 -2.5259 -0.8130 31 1 -0.4850 -0.8364 -0.0785 32 1 4.3929 0.5482 0.6269 33 1 3.2410 0.2425 1.9629 34 1 4.6496 -1.4622 2.9363 35 1 5.8655 -0.2835 2.3410 36 1 6.3977 -1.3431 -0.8236 37 1 7.6024 -0.6799 -2.0297 38 1 9.3166 0.2495 -3.5201 39 1 11.5035 0.9264 -2.6349 40 1 13.1365 1.0986 -0.1036 41 1 12.5247 0.4322 2.3401 42 1 7.0179 -3.5340 1.3946 43 1 5.9962 -3.1240 2.8008 44 1 5.3923 -4.9370 0.4618 45 1 4.8492 -5.0590 2.1636 46 1 3.1374 -3.3555 1.8445 47 1 3.0894 -4.2100 0.2682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992213824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:32 Heat of formation + Delta-G solvation = 30.673772 kcal Electronic energy + Delta-G solvation = -30088.743024 eV Core-core repulsion = 26236.305367 eV Total energy + Delta-G solvation = -3852.437657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.37867 -41.54160 -39.55912 -37.71673 -36.19151 -34.81825 -33.92773 -32.99751 -31.58570 -30.42052 -29.69219 -28.75017 -27.68788 -25.22022 -24.99293 -23.06493 -22.75616 -22.15148 -21.72140 -20.90122 -20.31055 -19.46998 -19.03008 -18.07295 -17.45941 -17.08001 -16.84100 -16.42129 -15.97642 -15.83877 -15.65088 -15.39221 -15.13765 -14.92453 -14.87739 -14.76840 -14.38169 -13.95052 -13.64952 -13.55518 -13.42196 -13.15285 -12.93051 -12.73030 -12.65619 -12.56911 -12.42781 -12.29848 -12.02192 -11.88079 -11.71875 -11.56705 -11.47689 -11.21165 -10.84423 -10.73062 -10.64182 -10.08627 -9.22688 -9.14523 -8.70426 -8.58172 -5.43436 -0.28542 0.65013 1.38573 1.47810 1.55817 1.64642 2.04884 2.09843 2.30942 2.50190 2.95773 3.02373 3.19551 3.37087 3.65385 3.70017 3.82402 3.84906 4.02641 4.11599 4.17286 4.18040 4.30637 4.34495 4.37620 4.46297 4.51495 4.64765 4.66492 4.72762 4.75597 4.82285 4.87478 4.95633 4.97527 4.99433 5.03155 5.11455 5.18798 5.23599 5.35047 5.45082 5.54660 5.56915 5.66364 5.75754 5.81170 6.12847 6.16513 6.47255 6.65378 6.83148 7.14773 7.48945 8.14342 8.88839 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.003644 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.070797 B = 7682.864091 C = 8589.533614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.074 4.074 3 Si 1.100 2.900 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.306 1.306 7 C -0.301 4.301 8 H 0.050 0.950 9 N -0.615 5.615 10 C 0.102 3.898 11 C -0.117 4.117 12 C 0.172 3.828 13 N -0.700 5.700 14 C 0.564 3.436 15 O -0.571 6.571 16 C -0.174 4.174 17 C -0.061 4.061 18 C -0.161 4.161 19 C -0.040 4.040 20 C -0.143 4.143 21 C -0.213 4.213 22 C 0.048 3.952 23 N -0.587 5.587 24 H 0.424 0.576 25 C 0.122 3.878 26 C -0.100 4.100 27 C -0.110 4.110 28 C -0.123 4.123 29 C 0.152 3.848 30 H 0.056 0.944 31 H 0.249 0.751 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.407 0.593 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.206 0.794 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.586 -2.536 -1.245 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.268 4.268 3 Si 0.928 3.072 4 H -0.212 1.212 5 H -0.192 1.192 6 H -0.234 1.234 7 C -0.430 4.430 8 H 0.068 0.932 9 N -0.341 5.341 10 C -0.022 4.022 11 C -0.157 4.157 12 C 0.085 3.915 13 N -0.351 5.351 14 C 0.354 3.646 15 O -0.453 6.453 16 C -0.180 4.180 17 C -0.081 4.081 18 C -0.180 4.180 19 C -0.058 4.058 20 C -0.148 4.148 21 C -0.237 4.237 22 C -0.077 4.077 23 N -0.190 5.190 24 H 0.263 0.737 25 C 0.011 3.989 26 C -0.139 4.139 27 C -0.148 4.148 28 C -0.163 4.163 29 C 0.046 3.954 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.245 0.755 37 H 0.158 0.842 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.191 0.809 41 H 0.223 0.777 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 27.430 -1.045 -0.238 27.451 hybrid contribution -1.166 -1.706 -0.146 2.072 sum 26.263 -2.750 -0.384 26.410 Atomic orbital electron populations 1.71010 1.06991 1.29219 1.53194 1.26875 0.96414 1.03896 0.99635 0.83355 0.73886 0.72963 0.76947 1.21161 1.19246 1.23429 1.19884 0.88255 0.95132 1.39732 0.93168 1.44859 1.10210 1.19213 1.59842 1.22109 0.94275 0.92550 0.93306 1.23006 0.97042 0.98286 0.97318 1.21444 0.86262 0.93646 0.90125 1.45776 1.12936 1.64215 1.12127 1.18401 0.81889 0.76779 0.87517 1.90634 1.80895 1.56903 1.16853 1.18965 0.92842 1.11465 0.94770 1.21354 1.00110 0.95878 0.90765 1.21156 0.93295 1.02406 1.01182 1.21115 0.97048 0.94850 0.92799 1.19670 0.95127 1.05715 0.94263 1.22065 0.99277 1.10604 0.91741 1.22598 0.85407 0.99200 1.00537 1.42159 1.13708 1.54805 1.08321 0.73698 1.18260 0.93786 1.00583 0.86289 1.22148 0.98948 0.92679 1.00134 1.22633 0.93369 0.96835 1.01933 1.23075 0.97272 0.96176 0.99786 1.22070 0.87449 0.89027 0.96878 0.92595 0.94105 0.95349 0.94224 0.90098 0.90537 0.75531 0.84221 0.82581 0.82738 0.80907 0.77682 0.91451 0.91090 0.90350 0.90144 0.92937 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.56 13.70 21.65 0.30 -61.27 16 2 C -0.07 -4.39 5.42 84.86 0.46 -3.93 16 3 Si 1.10 54.79 24.69 68.60 1.69 56.48 16 4 H -0.28 -13.55 6.66 99.48 0.66 -12.89 16 5 H -0.27 -12.20 6.21 99.48 0.62 -11.58 16 6 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 7 C -0.30 -17.01 10.16 84.03 0.85 -16.15 16 8 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 9 N -0.62 -28.99 2.89 -663.26 -1.92 -30.91 16 10 C 0.10 4.48 4.70 86.93 0.41 4.89 16 11 C -0.12 -4.26 5.80 31.97 0.19 -4.07 16 12 C 0.17 5.56 0.73 5.19 0.00 5.56 16 13 N -0.70 -20.24 5.18 -418.92 -2.17 -22.41 16 14 C 0.56 16.62 6.91 86.69 0.60 17.22 16 15 O -0.57 -18.67 13.04 -4.01 -0.05 -18.73 16 16 C -0.17 -4.55 5.88 -20.03 -0.12 -4.66 16 17 C -0.06 -1.30 9.52 22.56 0.21 -1.08 16 18 C -0.16 -2.77 10.00 22.21 0.22 -2.54 16 19 C -0.04 -0.68 10.09 22.51 0.23 -0.45 16 20 C -0.14 -3.03 6.37 -20.21 -0.13 -3.16 16 21 C -0.21 -3.47 11.09 23.52 0.26 -3.21 16 22 C 0.05 0.75 11.82 82.98 0.98 1.73 16 23 N -0.59 -12.84 5.87 -186.99 -1.10 -13.94 16 24 H 0.42 9.43 7.54 -92.70 -0.70 8.73 16 25 C 0.12 3.09 6.87 39.44 0.27 3.36 16 26 C -0.10 -2.83 5.25 31.20 0.16 -2.66 16 27 C -0.11 -2.85 6.88 32.32 0.22 -2.63 16 28 C -0.12 -4.25 6.38 32.51 0.21 -4.04 16 29 C 0.15 5.70 3.59 46.24 0.17 5.87 16 30 H 0.06 2.06 7.98 -2.39 -0.02 2.04 16 31 H 0.25 16.01 8.73 -92.71 -0.81 15.21 16 32 H 0.03 1.27 5.54 -2.39 -0.01 1.26 16 33 H 0.04 1.89 6.32 -2.39 -0.02 1.87 16 34 H 0.08 2.87 7.65 -2.39 -0.02 2.85 16 35 H 0.08 2.75 6.82 -2.39 -0.02 2.73 16 36 H 0.41 10.51 6.51 -92.71 -0.60 9.90 16 37 H 0.14 2.50 6.38 -2.91 -0.02 2.48 16 38 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.07 1.87 7.40 -2.38 -0.02 1.85 16 43 H 0.07 2.03 7.41 -2.39 -0.02 2.01 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.34 363.90 1.50 -71.85 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.46 Total: 28.89 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.20 Total: -9.97 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -4.89 Total: -128.52 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 54.79 SS G_CDS: 1.69 Total: 56.48 kcal Total: -73.34 1.50 -71.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992213824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.522 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds