Wall clock time and date at job start Tue Mar 31 2020 22:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00116 * 2 1 4 4 H 1.48498 * 109.47325 * 240.00008 * 3 2 1 5 5 H 1.48496 * 109.46835 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46883 * 119.99908 * 3 2 1 7 7 C 1.38816 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99982 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.49298 * 127.10689 * 359.97086 * 9 7 2 11 11 C 1.56226 * 106.51246 * 188.66107 * 10 9 7 12 12 C 1.52145 * 100.80871 * 23.44837 * 11 10 9 13 13 N 1.46504 * 111.09649 * 73.98192 * 12 11 10 14 14 C 1.34773 * 120.00016 * 61.01104 * 13 12 11 15 15 O 1.21595 * 120.00064 * 359.97438 * 14 13 12 16 16 C 1.47503 * 120.00101 * 180.02562 * 14 13 12 17 17 C 1.39352 * 120.20670 * 359.97438 * 16 14 13 18 18 C 1.38314 * 120.49626 * 180.28320 * 17 16 14 19 19 C 1.37911 * 120.59246 * 359.47428 * 18 17 16 20 20 C 1.39537 * 119.99078 * 0.52452 * 19 18 17 21 21 C 1.46573 * 133.96036 * 179.74354 * 20 19 18 22 22 C 1.34207 * 106.89107 * 179.97438 * 21 20 19 23 23 N 1.36898 * 109.88689 * 359.97438 * 22 21 20 24 24 H 0.97006 * 125.01542 * 179.97438 * 23 22 21 25 25 C 1.37123 * 109.97078 * 0.02562 * 23 22 21 26 26 C 1.51236 * 122.08848 * 208.15481 * 12 11 10 27 27 C 1.56588 * 104.17398 * 141.04399 * 26 12 11 28 28 C 1.56288 * 106.06965 * 353.43152 * 27 26 12 29 29 C 1.42696 * 127.10119 * 179.97438 * 9 7 2 30 30 H 1.08996 * 108.16084 * 256.50346 * 29 9 7 31 31 H 0.97000 * 119.99800 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.04788 * 69.40032 * 10 9 7 33 33 H 1.08996 * 110.04834 * 307.92871 * 10 9 7 34 34 H 1.08996 * 111.15073 * 265.56462 * 11 10 9 35 35 H 1.08996 * 111.15229 * 141.33450 * 11 10 9 36 36 H 0.97000 * 119.99844 * 241.01326 * 13 12 11 37 37 H 1.08002 * 119.74788 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.70526 * 179.72519 * 18 17 16 39 39 H 1.08005 * 120.00955 * 180.28257 * 19 18 17 40 40 H 1.07997 * 126.55051 * 359.95909 * 21 20 19 41 41 H 1.08008 * 125.05515 * 180.02562 * 22 21 20 42 42 H 1.09000 * 110.40625 * 260.69339 * 26 12 11 43 43 H 1.08996 * 110.40982 * 23.13168 * 26 12 11 44 44 H 1.08990 * 110.45104 * 234.07366 * 27 26 12 45 45 H 1.08999 * 109.79383 * 112.42847 * 27 26 12 46 46 H 1.09000 * 110.96612 * 217.20290 * 28 27 26 47 47 H 1.08993 * 110.96946 * 93.43568 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1560 -2.5727 0.0006 11 6 -0.4135 -4.0970 0.2261 12 6 0.8805 -4.5062 0.9138 13 7 0.9156 -4.0290 2.2985 14 6 -0.0180 -4.4430 3.1779 15 8 -0.8898 -5.2124 2.8219 16 6 0.0170 -3.9620 4.5718 17 6 1.0137 -3.0799 4.9843 18 6 1.0556 -2.6296 6.2915 19 6 0.1063 -3.0373 7.2050 20 6 -0.9018 -3.9203 6.8163 21 6 -2.0328 -4.5426 7.5106 22 6 -2.6674 -5.3108 6.6116 23 7 -2.0346 -5.2296 5.4004 24 1 -2.3094 -5.6975 4.5963 25 6 -0.9543 -4.3900 5.4917 26 6 1.4384 -5.9079 0.8074 27 6 2.9852 -5.6968 0.6861 28 6 3.2027 -4.1542 0.5606 29 6 1.8807 -3.7026 0.0005 30 1 1.7902 -4.1096 -1.0065 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5714 -2.2614 -0.9578 33 1 -0.6046 -1.9944 0.8083 34 1 -0.5370 -4.6195 -0.7224 35 1 -1.2728 -4.2587 0.8768 36 1 1.6108 -3.4149 2.5823 37 1 1.7620 -2.7492 4.2792 38 1 1.8364 -1.9496 6.5985 39 1 0.1454 -2.6763 8.2222 40 1 -2.3035 -4.4086 8.5475 41 1 -3.5469 -5.9042 6.8135 42 1 1.1852 -6.4862 1.6960 43 1 1.0602 -6.4006 -0.0883 44 1 3.3705 -6.2037 -0.1985 45 1 3.4806 -6.0744 1.5806 46 1 4.0159 -3.9299 -0.1298 47 1 3.3867 -3.7055 1.5367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992213826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:38 Heat of formation + Delta-G solvation = 65.238266 kcal Electronic energy + Delta-G solvation = -30523.812033 eV Core-core repulsion = 26672.873205 eV Total energy + Delta-G solvation = -3850.938828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30969 -40.34001 -38.04818 -36.63258 -34.43284 -33.05934 -32.07492 -31.49577 -29.94853 -29.33857 -28.58609 -26.95970 -25.81503 -24.14155 -23.74771 -21.70797 -21.33339 -20.59072 -20.31654 -19.60922 -18.70378 -17.92334 -16.91213 -16.48907 -16.04687 -15.72956 -14.95251 -14.84635 -14.65664 -14.51408 -14.22432 -13.92721 -13.86968 -13.74857 -13.34128 -13.09765 -12.70164 -12.47591 -12.32231 -11.95129 -11.75106 -11.56833 -11.42819 -11.36022 -11.27136 -11.01672 -10.92642 -10.83887 -10.49315 -10.30789 -10.04117 -9.98405 -9.70841 -9.68025 -9.60297 -9.10315 -8.67376 -8.49151 -8.19561 -7.69154 -6.87589 -5.75379 -3.10420 0.82509 1.70391 2.58795 3.27694 3.31847 3.37203 3.42128 3.43830 3.63370 4.11821 4.43928 4.61032 4.70673 4.88534 5.04392 5.11397 5.19380 5.21124 5.29396 5.45276 5.46443 5.55704 5.59232 5.69550 5.81121 5.84725 5.91447 5.93266 5.95041 6.00430 6.12071 6.24545 6.28366 6.33650 6.36786 6.41028 6.48169 6.57505 6.67645 6.69575 6.75726 6.82735 6.88956 7.15210 7.20638 7.51002 7.59889 7.62556 7.77219 8.05261 8.18879 8.67379 9.11880 9.78698 10.47970 11.36627 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010925 B = 0.004312 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.389877 B = 6492.216627 C = 7697.958560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.179 3.821 11 C -0.142 4.142 12 C 0.131 3.869 13 N -0.680 5.680 14 C 0.564 3.436 15 O -0.563 6.563 16 C -0.143 4.143 17 C -0.055 4.055 18 C -0.157 4.157 19 C -0.048 4.048 20 C -0.125 4.125 21 C -0.207 4.207 22 C 0.047 3.953 23 N -0.578 5.578 24 H 0.427 0.573 25 C 0.151 3.849 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.116 4.116 29 C 0.159 3.841 30 H 0.022 0.978 31 H 0.254 0.746 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.401 0.599 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -11.139 12.020 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.306 5.306 10 C 0.055 3.945 11 C -0.180 4.180 12 C 0.043 3.957 13 N -0.330 5.330 14 C 0.352 3.648 15 O -0.445 6.445 16 C -0.149 4.149 17 C -0.075 4.075 18 C -0.176 4.176 19 C -0.067 4.067 20 C -0.130 4.130 21 C -0.232 4.232 22 C -0.080 4.080 23 N -0.181 5.181 24 H 0.267 0.733 25 C 0.040 3.960 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.154 4.154 29 C 0.048 3.952 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.238 0.762 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.187 0.813 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.470 -11.479 11.597 16.324 hybrid contribution 0.579 1.135 -0.298 1.309 sum 0.109 -10.344 11.299 15.319 Atomic orbital electron populations 1.69910 1.04935 1.25289 1.56206 1.24788 0.95579 0.97614 1.01919 0.86260 0.78515 0.83420 0.77897 1.21198 1.21647 1.21113 1.18951 0.90210 0.82277 1.44767 0.90370 1.43637 1.01700 0.99152 1.86092 1.21998 0.83154 0.88675 1.00634 1.22822 0.96793 0.99351 0.99080 1.21571 0.99020 0.93617 0.81464 1.45561 1.30198 1.47540 1.09656 1.18044 0.81493 0.80589 0.84697 1.90607 1.36945 1.37224 1.79680 1.19053 0.98313 1.04449 0.93064 1.21139 0.96155 0.93886 0.96343 1.20800 1.00616 1.02976 0.93200 1.20649 0.92312 0.94492 0.99254 1.19204 0.98757 1.02208 0.92838 1.21636 0.98029 1.04019 0.99559 1.21894 0.99232 1.02235 0.84653 1.41975 1.23778 1.40240 1.12127 0.73349 1.17947 0.89750 0.93980 0.94366 1.22044 0.95010 0.96122 1.01832 1.22968 0.95629 0.95890 1.01015 1.21857 0.98013 0.94497 1.01060 1.20812 0.91538 0.87507 0.95294 0.96100 0.93612 0.94793 0.91787 0.91836 0.90551 0.76223 0.85157 0.85408 0.85820 0.83638 0.81337 0.91614 0.91200 0.91859 0.92254 0.91632 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.55 55.49 0.59 -25.85 16 2 C 0.00 -0.05 5.49 -17.43 -0.10 -0.15 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.16 10.29 -15.06 -0.15 -6.32 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.58 -14.06 3.16 -162.69 -0.51 -14.57 16 10 C 0.18 4.35 5.33 -0.76 0.00 4.35 16 11 C -0.14 -2.87 6.10 -25.44 -0.16 -3.02 16 12 C 0.13 2.39 0.42 -130.69 -0.06 2.34 16 13 N -0.68 -12.17 4.43 -47.60 -0.21 -12.38 16 14 C 0.56 10.23 7.15 -12.49 -0.09 10.14 16 15 O -0.56 -10.93 13.28 5.28 0.07 -10.86 16 16 C -0.14 -2.36 5.88 -104.87 -0.62 -2.98 16 17 C -0.06 -0.81 9.52 -39.14 -0.37 -1.18 16 18 C -0.16 -1.99 10.00 -39.67 -0.40 -2.39 16 19 C -0.05 -0.60 10.09 -39.22 -0.40 -1.00 16 20 C -0.13 -1.75 6.37 -105.15 -0.67 -2.42 16 21 C -0.21 -2.38 11.09 -37.64 -0.42 -2.80 16 22 C 0.05 0.51 11.82 -16.71 -0.20 0.31 16 23 N -0.58 -7.92 5.87 -10.45 -0.06 -7.98 16 24 H 0.43 5.79 7.54 -40.82 -0.31 5.48 16 25 C 0.15 2.36 6.87 -83.76 -0.58 1.79 16 26 C -0.11 -1.73 6.24 -25.69 -0.16 -1.89 16 27 C -0.12 -1.61 6.95 -23.03 -0.16 -1.77 16 28 C -0.12 -1.88 6.46 -26.21 -0.17 -2.05 16 29 C 0.16 3.14 2.65 -68.72 -0.18 2.96 16 30 H 0.02 0.45 7.98 -51.93 -0.41 0.03 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.03 0.90 7.98 -51.93 -0.41 0.49 16 33 H 0.06 1.75 7.05 -51.93 -0.37 1.39 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.61 6.27 -51.93 -0.33 1.29 16 36 H 0.40 7.06 5.58 -40.82 -0.23 6.84 16 37 H 0.13 1.81 6.37 -52.49 -0.33 1.47 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 1.04 7.17 -51.93 -0.37 0.66 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -31.21 369.65 -10.97 -42.18 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -6.52 Total: 13.49 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -4.87 Total: -6.08 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.20 Total: -60.78 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.21 -10.97 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992213826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.420 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds