Wall clock time and date at job start Tue Mar 31 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00116 * 2 1 4 4 H 1.48498 * 109.47325 * 240.00008 * 3 2 1 5 5 H 1.48496 * 109.46835 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46883 * 119.99908 * 3 2 1 7 7 C 1.38816 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99982 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.49298 * 127.10689 * 359.97086 * 9 7 2 11 11 C 1.56226 * 106.51246 * 188.66107 * 10 9 7 12 12 C 1.52145 * 100.80871 * 23.44837 * 11 10 9 13 13 N 1.46504 * 111.09649 * 73.98192 * 12 11 10 14 14 C 1.34773 * 120.00016 * 61.01104 * 13 12 11 15 15 O 1.21595 * 120.00064 * 359.97438 * 14 13 12 16 16 C 1.47503 * 120.00101 * 180.02562 * 14 13 12 17 17 C 1.39352 * 120.20670 * 359.97438 * 16 14 13 18 18 C 1.38314 * 120.49626 * 180.28320 * 17 16 14 19 19 C 1.37911 * 120.59246 * 359.47428 * 18 17 16 20 20 C 1.39537 * 119.99078 * 0.52452 * 19 18 17 21 21 C 1.46573 * 133.96036 * 179.74354 * 20 19 18 22 22 C 1.34207 * 106.89107 * 179.97438 * 21 20 19 23 23 N 1.36898 * 109.88689 * 359.97438 * 22 21 20 24 24 H 0.97006 * 125.01542 * 179.97438 * 23 22 21 25 25 C 1.37123 * 109.97078 * 0.02562 * 23 22 21 26 26 C 1.51236 * 122.08848 * 208.15481 * 12 11 10 27 27 C 1.56588 * 104.17398 * 141.04399 * 26 12 11 28 28 C 1.56288 * 106.06965 * 353.43152 * 27 26 12 29 29 C 1.42696 * 127.10119 * 179.97438 * 9 7 2 30 30 H 1.08996 * 108.16084 * 256.50346 * 29 9 7 31 31 H 0.97000 * 119.99800 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.04788 * 69.40032 * 10 9 7 33 33 H 1.08996 * 110.04834 * 307.92871 * 10 9 7 34 34 H 1.08996 * 111.15073 * 265.56462 * 11 10 9 35 35 H 1.08996 * 111.15229 * 141.33450 * 11 10 9 36 36 H 0.97000 * 119.99844 * 241.01326 * 13 12 11 37 37 H 1.08002 * 119.74788 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.70526 * 179.72519 * 18 17 16 39 39 H 1.08005 * 120.00955 * 180.28257 * 19 18 17 40 40 H 1.07997 * 126.55051 * 359.95909 * 21 20 19 41 41 H 1.08008 * 125.05515 * 180.02562 * 22 21 20 42 42 H 1.09000 * 110.40625 * 260.69339 * 26 12 11 43 43 H 1.08996 * 110.40982 * 23.13168 * 26 12 11 44 44 H 1.08990 * 110.45104 * 234.07366 * 27 26 12 45 45 H 1.08999 * 109.79383 * 112.42847 * 27 26 12 46 46 H 1.09000 * 110.96612 * 217.20290 * 28 27 26 47 47 H 1.08993 * 110.96946 * 93.43568 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1560 -2.5727 0.0006 11 6 -0.4135 -4.0970 0.2261 12 6 0.8805 -4.5062 0.9138 13 7 0.9156 -4.0290 2.2985 14 6 -0.0180 -4.4430 3.1779 15 8 -0.8898 -5.2124 2.8219 16 6 0.0170 -3.9620 4.5718 17 6 1.0137 -3.0799 4.9843 18 6 1.0556 -2.6296 6.2915 19 6 0.1063 -3.0373 7.2050 20 6 -0.9018 -3.9203 6.8163 21 6 -2.0328 -4.5426 7.5106 22 6 -2.6674 -5.3108 6.6116 23 7 -2.0346 -5.2296 5.4004 24 1 -2.3094 -5.6975 4.5963 25 6 -0.9543 -4.3900 5.4917 26 6 1.4384 -5.9079 0.8074 27 6 2.9852 -5.6968 0.6861 28 6 3.2027 -4.1542 0.5606 29 6 1.8807 -3.7026 0.0005 30 1 1.7902 -4.1096 -1.0065 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5714 -2.2614 -0.9578 33 1 -0.6046 -1.9944 0.8083 34 1 -0.5370 -4.6195 -0.7224 35 1 -1.2728 -4.2587 0.8768 36 1 1.6108 -3.4149 2.5823 37 1 1.7620 -2.7492 4.2792 38 1 1.8364 -1.9496 6.5985 39 1 0.1454 -2.6763 8.2222 40 1 -2.3035 -4.4086 8.5475 41 1 -3.5469 -5.9042 6.8135 42 1 1.1852 -6.4862 1.6960 43 1 1.0602 -6.4006 -0.0883 44 1 3.3705 -6.2037 -0.1985 45 1 3.4806 -6.0744 1.5806 46 1 4.0159 -3.9299 -0.1298 47 1 3.3867 -3.7055 1.5367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992213826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:37 Heat of formation + Delta-G solvation = 47.338349 kcal Electronic energy + Delta-G solvation = -30524.588232 eV Core-core repulsion = 26672.873205 eV Total energy + Delta-G solvation = -3851.715027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.40117 -41.74669 -39.45003 -37.69516 -36.17338 -34.44738 -33.68633 -32.86459 -31.54818 -30.39832 -29.61344 -28.56291 -27.33427 -25.96968 -24.99249 -22.75060 -22.56689 -22.10251 -21.44955 -21.18498 -20.15236 -19.07306 -18.38309 -18.03100 -17.37378 -17.06473 -16.42372 -16.30030 -15.94753 -15.80800 -15.73046 -15.46259 -15.12153 -14.86444 -14.76991 -14.17355 -14.08039 -13.93227 -13.66609 -13.44378 -13.07700 -12.97718 -12.86382 -12.73738 -12.62918 -12.53374 -12.34502 -12.17966 -12.14394 -12.05618 -11.79562 -11.56894 -11.37780 -11.13188 -10.73356 -10.70648 -10.59684 -9.93877 -9.22109 -8.88098 -8.68456 -7.83693 -5.19879 -0.25307 0.65356 1.47433 1.49768 1.56010 1.60133 2.12284 2.28215 2.31967 2.50660 2.98566 3.07411 3.36273 3.66797 3.75500 3.86041 3.87618 4.02237 4.09338 4.12666 4.26229 4.33483 4.37806 4.40267 4.47105 4.55187 4.61523 4.67469 4.78127 4.87892 4.92952 4.95296 4.97265 5.02508 5.06098 5.09368 5.21104 5.26678 5.36442 5.47438 5.53860 5.54715 5.58496 5.65753 5.75919 5.78264 5.82313 6.17208 6.17799 6.58719 6.69125 7.03479 7.27243 7.76777 8.49616 9.28103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010925 B = 0.004312 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.389877 B = 6492.216627 C = 7697.958560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.062 4.062 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.234 4.234 8 H 0.090 0.910 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.131 4.131 12 C 0.139 3.861 13 N -0.682 5.682 14 C 0.559 3.441 15 O -0.583 6.583 16 C -0.174 4.174 17 C -0.064 4.064 18 C -0.161 4.161 19 C -0.041 4.041 20 C -0.143 4.143 21 C -0.212 4.212 22 C 0.048 3.952 23 N -0.588 5.588 24 H 0.423 0.577 25 C 0.121 3.879 26 C -0.106 4.106 27 C -0.102 4.102 28 C -0.111 4.111 29 C 0.147 3.853 30 H 0.018 0.982 31 H 0.244 0.756 32 H -0.001 1.001 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.401 0.599 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.176 0.824 41 H 0.209 0.791 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 -12.285 14.032 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.205 1.205 5 H -0.229 1.229 6 H -0.197 1.197 7 C -0.362 4.362 8 H 0.108 0.892 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.170 4.170 12 C 0.051 3.949 13 N -0.331 5.331 14 C 0.349 3.651 15 O -0.467 6.467 16 C -0.180 4.180 17 C -0.083 4.083 18 C -0.180 4.180 19 C -0.059 4.059 20 C -0.148 4.148 21 C -0.236 4.236 22 C -0.077 4.077 23 N -0.190 5.190 24 H 0.262 0.738 25 C 0.009 3.991 26 C -0.145 4.145 27 C -0.140 4.140 28 C -0.150 4.150 29 C 0.037 3.963 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.238 0.762 37 H 0.148 0.852 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.194 0.806 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.184 -12.660 13.625 18.636 hybrid contribution 0.018 1.470 -0.893 1.720 sum 1.202 -11.190 12.732 16.993 Atomic orbital electron populations 1.70150 1.06547 1.25177 1.58252 1.25588 0.96277 1.00922 1.02689 0.85229 0.77109 0.79086 0.78384 1.20489 1.22864 1.19725 1.19378 0.90912 0.83121 1.42816 0.89183 1.43746 1.01675 1.00452 1.85963 1.21633 0.83581 0.90846 0.97140 1.22661 0.97799 0.96536 0.99969 1.21550 0.96776 0.95234 0.81344 1.45561 1.30379 1.47687 1.09452 1.18401 0.80982 0.80215 0.85523 1.90572 1.37583 1.38230 1.80271 1.19065 1.00153 1.06406 0.92339 1.21286 0.95815 0.93749 0.97497 1.21129 1.01472 1.03118 0.92327 1.21088 0.91074 0.93087 1.00670 1.19699 0.99964 1.02612 0.92495 1.22057 0.97025 1.03515 1.00965 1.22629 0.99815 1.01985 0.83278 1.42156 1.23743 1.40104 1.13019 0.73824 1.18258 0.90473 0.95124 0.95239 1.22039 0.96369 0.93878 1.02239 1.22901 0.94055 0.93924 1.03115 1.21880 0.95982 0.96197 1.00911 1.21042 0.94342 0.85291 0.95579 0.96498 0.94674 0.98307 0.95778 0.90309 0.91744 0.76210 0.85242 0.82739 0.82435 0.80616 0.77423 0.91917 0.90084 0.89541 0.90335 0.90708 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.60 10.55 21.65 0.23 -57.37 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 3 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.23 -12.46 10.29 84.04 0.86 -11.59 16 8 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.60 -29.45 3.16 -668.63 -2.11 -31.57 16 10 C 0.19 9.91 5.33 86.96 0.46 10.37 16 11 C -0.13 -5.49 6.10 31.43 0.19 -5.30 16 12 C 0.14 5.07 0.42 4.33 0.00 5.07 16 13 N -0.68 -24.92 4.43 -422.77 -1.87 -26.79 16 14 C 0.56 21.00 7.15 86.69 0.62 21.62 16 15 O -0.58 -23.48 13.28 -4.02 -0.05 -23.54 16 16 C -0.17 -5.90 5.88 -20.03 -0.12 -6.02 16 17 C -0.06 -1.88 9.52 22.56 0.21 -1.67 16 18 C -0.16 -3.88 10.00 22.21 0.22 -3.66 16 19 C -0.04 -0.93 10.09 22.51 0.23 -0.70 16 20 C -0.14 -3.79 6.37 -20.20 -0.13 -3.92 16 21 C -0.21 -4.33 11.09 23.53 0.26 -4.07 16 22 C 0.05 0.96 11.82 82.98 0.98 1.94 16 23 N -0.59 -16.04 5.87 -186.98 -1.10 -17.14 16 24 H 0.42 11.78 7.54 -92.70 -0.70 11.08 16 25 C 0.12 3.80 6.87 39.44 0.27 4.07 16 26 C -0.11 -3.13 6.24 31.27 0.20 -2.93 16 27 C -0.10 -2.49 6.95 32.99 0.23 -2.27 16 28 C -0.11 -3.40 6.46 30.93 0.20 -3.20 16 29 C 0.15 5.75 2.65 46.47 0.12 5.87 16 30 H 0.02 0.71 7.98 -2.39 -0.02 0.69 16 31 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.00 -0.07 7.98 -2.39 -0.02 -0.09 16 33 H 0.02 1.41 7.05 -2.39 -0.02 1.40 16 34 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.06 2.86 6.27 -2.39 -0.01 2.85 16 36 H 0.40 14.45 5.58 -92.71 -0.52 13.93 16 37 H 0.13 3.68 6.37 -2.91 -0.02 3.66 16 38 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.06 1.91 7.73 -2.39 -0.02 1.90 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 1.96 7.17 -2.39 -0.02 1.94 16 Total: -1.00 -71.47 369.65 2.20 -69.27 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -0.20 Total: 39.54 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.29 Total: 0.65 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -4.86 Total: -132.86 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.47 2.20 -69.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992213826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.610 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds