Wall clock time and date at job start Tue Mar 31 2020 23:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48498 * 109.47546 * 270.00825 * 3 2 1 5 5 H 1.48504 * 109.46586 * 30.00781 * 3 2 1 6 6 H 1.48498 * 109.47392 * 150.00382 * 3 2 1 7 7 C 1.38817 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99754 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99814 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.45852 * 155.00267 * 10 9 7 12 12 C 1.53189 * 109.30967 * 181.38718 * 11 10 9 13 13 N 1.46927 * 108.77511 * 305.36073 * 12 11 10 14 14 C 1.34776 * 120.63132 * 233.58665 * 13 12 11 15 15 O 1.21285 * 119.99818 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00131 * 180.02562 * 14 13 12 17 17 C 1.50702 * 109.47160 * 180.02562 * 16 14 13 18 18 C 1.36214 * 120.66184 * 264.99818 * 17 16 14 19 19 N 1.32572 * 121.87374 * 180.23643 * 18 17 16 20 20 C 1.31259 * 122.77954 * 359.45676 * 19 18 17 21 21 C 1.40401 * 119.87776 * 0.52759 * 20 19 18 22 22 C 1.40385 * 122.07398 * 179.70767 * 21 20 19 23 23 C 1.36168 * 119.51200 * 180.02562 * 22 21 20 24 24 C 1.39388 * 121.09018 * 359.97438 * 23 22 21 25 25 C 1.36211 * 121.02308 * 0.02562 * 24 23 22 26 26 C 1.40232 * 119.48152 * 359.97438 * 25 24 23 27 27 C 1.46920 * 118.73751 * 53.86534 * 13 12 11 28 28 C 1.53037 * 109.45918 * 275.06809 * 10 9 7 29 29 H 0.96998 * 120.00000 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00485 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.45916 * 35.02491 * 10 9 7 32 32 H 1.08996 * 109.49805 * 61.43321 * 11 10 9 33 33 H 1.09006 * 109.52199 * 301.35087 * 11 10 9 34 34 H 1.09001 * 109.58405 * 185.57634 * 12 11 10 35 35 H 1.09003 * 109.70894 * 65.22242 * 12 11 10 36 36 H 1.08998 * 109.47275 * 59.99862 * 16 14 13 37 37 H 1.09005 * 109.46693 * 299.99455 * 16 14 13 38 38 H 1.08002 * 119.05898 * 359.94895 * 18 17 16 39 39 H 1.08002 * 120.06389 * 180.25972 * 20 19 18 40 40 H 1.07999 * 120.24568 * 0.02562 * 22 21 20 41 41 H 1.07992 * 119.45431 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.48399 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.25984 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.58854 * 65.92448 * 27 13 12 45 45 H 1.09003 * 109.58996 * 186.35321 * 27 13 12 46 46 H 1.08999 * 109.50043 * 298.56470 * 28 10 9 47 47 H 1.08998 * 109.49911 * 58.62895 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6525 0.7002 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.1803 -4.7522 0.6092 12 6 1.9618 -6.0694 0.6393 13 7 2.4413 -6.3659 -0.7175 14 6 2.1734 -7.5532 -1.2963 15 8 1.5312 -8.3891 -0.6965 16 6 2.6727 -7.8425 -2.6885 17 6 2.2406 -9.2265 -3.0996 18 6 3.0732 -10.2918 -2.9345 19 7 2.7196 -11.5186 -3.2919 20 6 1.5489 -11.7964 -3.8164 21 6 0.6161 -10.7687 -4.0290 22 6 -0.6464 -11.0127 -4.5921 23 6 -1.5107 -9.9766 -4.7756 24 6 -1.1630 -8.6764 -4.4129 25 6 0.0531 -8.4022 -3.8640 26 6 0.9691 -9.4442 -3.6601 27 6 3.2237 -5.3459 -1.4288 28 6 2.4233 -4.0346 -1.4379 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.9684 -3.5505 0.5893 32 1 0.2813 -4.8763 0.0055 33 1 0.9007 -4.4718 1.6248 34 1 1.3096 -6.8735 0.9802 35 1 2.8120 -5.9771 1.3153 36 1 3.7608 -7.7815 -2.7042 37 1 2.2576 -7.1115 -3.3825 38 1 4.0509 -10.1318 -2.5045 39 1 1.3051 -12.8129 -4.0878 40 1 -0.9303 -12.0149 -4.8777 41 1 -2.4816 -10.1653 -5.2092 42 1 -1.8684 -7.8740 -4.5704 43 1 0.3095 -7.3902 -3.5872 44 1 4.1748 -5.1932 -0.9186 45 1 3.4044 -5.6723 -2.4530 46 1 1.5126 -4.1655 -2.0223 47 1 3.0284 -3.2429 -1.8795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996685815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:39 Heat of formation + Delta-G solvation = 28.678866 kcal Electronic energy + Delta-G solvation = -28789.672864 eV Core-core repulsion = 24937.148702 eV Total energy + Delta-G solvation = -3852.524162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.25150 -39.93735 -37.61073 -37.35554 -34.53249 -34.38317 -32.15686 -31.42717 -31.06053 -30.37919 -29.36058 -27.98875 -24.94315 -24.13810 -23.74874 -23.06387 -22.73230 -21.58816 -20.23778 -18.84693 -18.18683 -17.79743 -17.29256 -17.05421 -16.57376 -15.79324 -15.38256 -14.98781 -14.88479 -14.58486 -14.40360 -14.01139 -13.83768 -13.81010 -13.68386 -13.43963 -13.36701 -13.13712 -12.91897 -12.44135 -12.32380 -12.11292 -12.04571 -11.86754 -11.61317 -11.26766 -11.01974 -10.93189 -10.86407 -10.53662 -10.32643 -10.28126 -9.88754 -9.75619 -9.70013 -9.65327 -9.26336 -8.96337 -8.54570 -8.22379 -7.03540 -5.82738 -3.12211 0.14015 0.72154 1.69213 2.61721 2.83700 3.07187 3.38559 3.43988 3.45805 3.87511 4.10209 4.31012 4.47250 4.51247 4.52452 4.55818 4.66811 4.74134 4.89111 4.96636 5.02112 5.08656 5.24054 5.27481 5.28843 5.35814 5.37309 5.48544 5.54119 5.57836 5.65628 5.67286 5.79805 5.84451 5.89401 5.95751 6.16545 6.17371 6.25194 6.30167 6.33400 6.41342 6.45440 6.56512 6.61856 6.83341 6.97466 7.45119 7.63256 7.77984 8.18377 8.35443 9.46732 10.03940 10.38488 11.39774 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.002400 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.583055 B =11663.677512 C =12382.454072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.116 3.884 13 N -0.606 5.606 14 C 0.516 3.484 15 O -0.539 6.539 16 C -0.101 4.101 17 C -0.094 4.094 18 C 0.086 3.914 19 N -0.485 5.485 20 C 0.140 3.860 21 C -0.111 4.111 22 C -0.090 4.090 23 C -0.119 4.119 24 C -0.098 4.098 25 C -0.106 4.106 26 C -0.008 4.008 27 C 0.105 3.895 28 C -0.151 4.151 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 -21.619 -10.046 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.339 5.339 14 C 0.303 3.697 15 O -0.416 6.416 16 C -0.141 4.141 17 C -0.096 4.096 18 C -0.058 4.058 19 N -0.192 5.192 20 C -0.031 4.031 21 C -0.113 4.113 22 C -0.109 4.109 23 C -0.137 4.137 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.013 4.013 27 C -0.019 4.019 28 C -0.192 4.192 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.162 -22.467 -9.496 24.595 hybrid contribution -0.491 1.904 -0.177 1.974 sum 2.670 -20.563 -9.673 22.881 Atomic orbital electron populations 1.69661 1.05140 1.25728 1.57491 1.24757 0.95502 0.97736 1.02913 0.86207 0.78674 0.83887 0.77513 1.21720 1.21771 1.20745 1.19222 0.90954 0.84076 1.42922 0.91163 1.42437 1.05806 0.99703 1.88495 1.20158 0.94467 0.86084 0.92413 1.22201 0.99164 0.94116 1.02252 1.21613 0.98745 0.98045 0.82217 1.48178 1.53915 1.14784 1.17049 1.20344 0.80069 0.81623 0.87644 1.90711 1.40055 1.45972 1.64909 1.20644 1.03297 0.94744 0.95419 1.20035 0.94206 0.95887 0.99462 1.21980 0.99748 0.87099 0.96951 1.67399 1.18722 1.22492 1.10605 1.23149 0.88159 0.98527 0.93282 1.19003 0.96508 0.93922 1.01912 1.20960 0.92351 0.99631 0.98007 1.20937 0.99884 0.92780 1.00139 1.21025 0.96494 0.97106 0.97057 1.20996 0.93830 0.98689 0.98904 1.17957 0.93697 0.93216 0.96409 1.22002 0.94603 0.88863 0.96398 1.22756 0.99950 0.94673 1.01820 0.93463 0.78271 0.93400 0.91901 0.90559 0.89448 0.91562 0.87423 0.87534 0.83247 0.82103 0.84997 0.85579 0.85428 0.85346 0.91226 0.90482 0.92200 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.27 5.12 -53.38 -0.27 -17.54 16 10 C 0.18 3.27 2.73 -67.89 -0.19 3.08 16 11 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 12 C 0.12 1.62 6.43 -3.71 -0.02 1.60 16 13 N -0.61 -7.91 2.97 -172.50 -0.51 -8.42 16 14 C 0.52 6.97 7.69 -10.99 -0.08 6.89 16 15 O -0.54 -9.32 15.45 5.55 0.09 -9.23 16 16 C -0.10 -1.02 3.65 -29.03 -0.11 -1.13 16 17 C -0.09 -1.10 4.40 -104.44 -0.46 -1.56 16 18 C 0.09 1.00 10.72 -17.96 -0.19 0.81 16 19 N -0.49 -5.92 10.30 -13.16 -0.14 -6.05 16 20 C 0.14 1.45 11.05 -16.98 -0.19 1.26 16 21 C -0.11 -1.22 5.74 -106.85 -0.61 -1.83 16 22 C -0.09 -0.77 9.81 -39.52 -0.39 -1.16 16 23 C -0.12 -1.01 9.94 -39.90 -0.40 -1.40 16 24 C -0.10 -0.94 9.95 -39.88 -0.40 -1.34 16 25 C -0.11 -1.20 9.33 -39.56 -0.37 -1.57 16 26 C -0.01 -0.09 5.75 -106.82 -0.61 -0.71 16 27 C 0.10 1.21 6.37 -3.49 -0.02 1.19 16 28 C -0.15 -2.34 5.67 -26.39 -0.15 -2.49 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 31 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.29 7.01 -51.93 -0.36 0.93 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.81 7.85 -51.93 -0.41 0.40 16 37 H 0.11 0.94 6.39 -51.93 -0.33 0.60 16 38 H 0.15 1.44 8.05 -52.49 -0.42 1.02 16 39 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.38 6.65 -52.48 -0.35 1.04 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -33.74 382.96 -10.64 -44.38 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.69 Total: 8.85 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -4.58 Total: -7.69 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.20 Total: -58.83 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.74 -10.64 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996685815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.063 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds