Wall clock time and date at job start Tue Mar 31 2020 23:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.49453 * 325.00019 * 10 9 7 12 12 C 1.53043 * 109.49889 * 204.93418 * 10 9 7 13 13 C 1.53041 * 109.53788 * 178.68066 * 12 10 9 14 14 C 1.53183 * 109.31293 * 61.36577 * 13 12 10 15 15 N 1.46929 * 108.77910 * 305.36396 * 14 13 12 16 16 C 1.34769 * 120.63241 * 233.61041 * 15 14 13 17 17 O 1.21283 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00116 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.36209 * 120.66764 * 264.99532 * 19 18 16 21 21 N 1.32580 * 121.87374 * 180.02562 * 20 19 18 22 22 C 1.31270 * 122.77676 * 0.02562 * 21 20 19 23 23 C 1.40385 * 119.88089 * 359.97438 * 22 21 20 24 24 C 1.40383 * 122.07132 * 179.97438 * 23 22 21 25 25 C 1.36171 * 119.51167 * 180.02562 * 24 23 22 26 26 C 1.39383 * 121.08862 * 0.02562 * 25 24 23 27 27 C 1.36210 * 121.02610 * 0.02562 * 26 25 24 28 28 C 1.40240 * 119.47914 * 359.68133 * 27 26 25 29 29 C 1.46933 * 118.76219 * 53.58375 * 15 14 13 30 30 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.45828 * 298.70214 * 12 10 9 33 33 H 1.09004 * 109.45670 * 58.67707 * 12 10 9 34 34 H 1.09003 * 109.49409 * 181.32068 * 13 12 10 35 35 H 1.09002 * 109.49549 * 301.38135 * 13 12 10 36 36 H 1.09003 * 109.58721 * 65.14912 * 14 13 12 37 37 H 1.09004 * 109.58828 * 185.43274 * 14 13 12 38 38 H 1.09003 * 109.47034 * 299.99749 * 18 16 15 39 39 H 1.09003 * 109.47140 * 59.99578 * 18 16 15 40 40 H 1.07994 * 119.06445 * 0.03233 * 20 19 18 41 41 H 1.08001 * 120.05469 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.24660 * 0.04990 * 24 23 22 43 43 H 1.08002 * 119.45153 * 179.97438 * 25 24 23 44 44 H 1.08004 * 119.48202 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.25985 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.61577 * 186.64475 * 29 15 14 47 47 H 1.08999 * 109.55901 * 66.21882 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9665 -3.5523 -0.5884 12 6 1.1780 -4.7546 -0.5977 13 6 1.9540 -6.0733 -0.6283 14 6 2.3210 -6.4786 0.8026 15 7 3.0432 -5.3682 1.4383 16 6 4.2487 -5.5688 2.0063 17 8 4.8351 -4.6438 2.5274 18 6 4.8684 -6.9425 1.9938 19 6 6.2055 -6.8967 2.6873 20 6 7.3534 -6.7322 1.9728 21 7 8.5423 -6.6891 2.5581 22 6 8.6996 -6.8010 3.8565 23 6 7.5792 -6.9741 4.6844 24 6 7.6943 -7.0993 6.0779 25 6 6.5724 -7.2658 6.8314 26 6 5.3103 -7.3147 6.2420 27 6 5.1603 -7.1978 4.8932 28 6 6.2929 -7.0189 4.0858 29 6 2.4268 -4.0344 1.4428 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3880 0.0092 32 1 0.2810 -4.8751 0.0097 33 1 0.8946 -4.4766 -1.6128 34 1 1.3351 -6.8492 -1.0789 35 1 2.8635 -5.9466 -1.2156 36 1 1.4128 -6.6937 1.3657 37 1 2.9555 -7.3647 0.7802 38 1 4.2129 -7.6414 2.5134 39 1 5.0049 -7.2701 0.9632 40 1 7.2935 -6.6341 0.8990 41 1 9.6892 -6.7592 4.2870 42 1 8.6655 -7.0634 6.5490 43 1 6.6621 -7.3624 7.9034 44 1 4.4377 -7.4482 6.8644 45 1 4.1765 -7.2379 4.4495 46 1 3.1329 -3.3063 1.8421 47 1 1.5275 -4.0501 2.0585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999406513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:56 Heat of formation + Delta-G solvation = 29.695930 kcal Electronic energy + Delta-G solvation = -28943.655107 eV Core-core repulsion = 25091.175048 eV Total energy + Delta-G solvation = -3852.480059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20200 -39.82305 -37.57220 -37.28665 -34.54423 -34.24036 -32.32813 -31.40319 -31.21159 -30.52564 -28.82065 -27.66848 -25.04491 -24.13388 -23.88833 -23.68044 -21.91378 -21.75097 -20.14158 -18.76231 -18.16381 -17.75080 -17.12091 -17.08864 -16.55823 -15.66958 -15.41094 -14.92915 -14.69092 -14.50230 -14.40031 -14.20287 -13.99186 -13.81551 -13.62861 -13.39693 -13.21987 -13.00455 -12.76864 -12.47608 -12.35702 -12.29433 -12.08009 -11.87270 -11.39023 -11.26152 -11.03919 -10.83764 -10.68839 -10.59956 -10.27770 -10.23594 -9.84992 -9.76020 -9.61540 -9.53589 -9.24109 -9.07493 -8.36218 -8.19023 -7.00912 -5.79385 -3.09204 0.17231 0.75121 1.72169 2.77100 2.87571 3.19902 3.46078 3.49578 3.51976 3.91138 4.14507 4.35257 4.50241 4.54075 4.57345 4.63250 4.67443 4.77334 4.87722 4.91775 4.98564 5.04330 5.08659 5.21896 5.27555 5.38430 5.46949 5.51785 5.56091 5.60425 5.67282 5.76790 5.82301 5.86948 5.90470 6.00676 6.13932 6.17007 6.19031 6.25758 6.32187 6.44317 6.47737 6.63728 6.71146 6.81554 6.99177 7.62975 7.70971 7.83734 8.36096 8.39808 9.50724 10.04409 10.39600 11.42803 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.002799 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.450200 B =10000.539166 C =10775.441224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.607 5.607 16 C 0.510 3.490 17 O -0.531 6.531 18 C -0.100 4.100 19 C -0.094 4.094 20 C 0.088 3.912 21 N -0.484 5.484 22 C 0.140 3.860 23 C -0.112 4.112 24 C -0.088 4.088 25 C -0.122 4.122 26 C -0.099 4.099 27 C -0.106 4.106 28 C -0.007 4.007 29 C 0.093 3.907 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.090 0.910 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -23.149 8.716 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.018 4.018 15 N -0.341 5.341 16 C 0.297 3.703 17 O -0.407 6.407 18 C -0.140 4.140 19 C -0.097 4.097 20 C -0.056 4.056 21 N -0.191 5.191 22 C -0.031 4.031 23 C -0.114 4.114 24 C -0.107 4.107 25 C -0.140 4.140 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.012 4.012 29 C -0.031 4.031 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.191 -22.339 8.308 26.330 hybrid contribution -0.801 0.911 0.569 1.340 sum 10.390 -21.427 8.877 25.414 Atomic orbital electron populations 1.69651 1.05120 1.25894 1.57404 1.24739 0.95511 0.97744 1.02599 0.86270 0.78575 0.83367 0.78037 1.21157 1.21639 1.21114 1.19226 0.91066 0.83999 1.43168 0.91130 1.42366 1.05778 0.99586 1.88129 1.20486 0.94861 0.86451 0.92454 0.93186 1.21825 0.98679 0.94098 1.01859 1.21884 1.00965 0.98264 0.95794 1.21752 0.96954 0.88965 0.94090 1.48298 1.18551 1.11084 1.56158 1.20348 0.81120 0.90078 0.78789 1.90749 1.61285 1.44040 1.44620 1.20651 0.94051 0.96702 1.02605 1.20037 0.95659 1.00997 0.92974 1.22014 0.86904 0.96281 1.00352 1.67415 1.26791 1.12216 1.12650 1.23156 0.97831 0.93366 0.88773 1.19004 0.93990 1.03272 0.95130 1.20967 0.99303 0.98473 0.92000 1.20915 0.92476 1.00345 1.00235 1.20981 0.97720 0.98203 0.94917 1.20952 0.97732 0.99821 0.93931 1.17951 0.93254 0.97092 0.92917 1.22785 0.97732 0.81594 1.01032 0.93404 0.78080 0.92045 0.91389 0.90967 0.91540 0.91362 0.90320 0.87936 0.87526 0.83154 0.82089 0.84990 0.85636 0.85603 0.85497 0.89198 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.84 9.93 -15.06 -0.15 -6.99 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.83 5.12 -53.31 -0.27 -18.10 16 10 C 0.17 3.31 2.92 -67.81 -0.20 3.11 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.92 5.36 -26.69 -0.14 -2.06 16 13 C -0.13 -1.44 6.08 -26.62 -0.16 -1.60 16 14 C 0.11 1.08 6.34 -3.71 -0.02 1.06 16 15 N -0.61 -8.83 2.97 -172.77 -0.51 -9.34 16 16 C 0.51 7.73 7.69 -10.99 -0.08 7.64 16 17 O -0.53 -10.69 15.45 5.56 0.09 -10.60 16 18 C -0.10 -1.04 3.66 -29.04 -0.11 -1.15 16 19 C -0.09 -1.18 4.40 -104.44 -0.46 -1.63 16 20 C 0.09 1.12 10.72 -17.96 -0.19 0.93 16 21 N -0.48 -6.40 10.30 -13.16 -0.14 -6.53 16 22 C 0.14 1.56 11.05 -16.98 -0.19 1.38 16 23 C -0.11 -1.28 5.74 -106.86 -0.61 -1.90 16 24 C -0.09 -0.78 9.81 -39.52 -0.39 -1.17 16 25 C -0.12 -1.03 9.94 -39.90 -0.40 -1.43 16 26 C -0.10 -0.92 9.95 -39.89 -0.40 -1.32 16 27 C -0.11 -1.17 9.33 -39.56 -0.37 -1.54 16 28 C -0.01 -0.09 5.75 -106.81 -0.61 -0.70 16 29 C 0.09 1.74 6.02 -3.71 -0.02 1.72 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.39 10.03 7.80 -40.82 -0.32 9.71 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.56 5.95 -51.93 -0.31 0.25 16 38 H 0.10 0.82 6.63 -51.93 -0.34 0.47 16 39 H 0.11 0.85 7.61 -51.93 -0.40 0.45 16 40 H 0.15 1.65 8.05 -52.49 -0.42 1.22 16 41 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 45 H 0.13 1.26 6.65 -52.49 -0.35 0.91 16 46 H 0.09 2.02 7.01 -51.93 -0.36 1.65 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -35.48 382.94 -10.66 -46.14 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.70 Total: 8.22 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -4.60 Total: -6.03 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.20 Total: -61.36 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.48 -10.66 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999406513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.837 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds