Wall clock time and date at job start Tue Mar 31 2020 23:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11 15 15 N 1.46495 * 109.49961 * 181.31820 * 13 12 11 16 16 C 1.34780 * 120.00548 * 154.99922 * 15 13 12 17 17 O 1.21283 * 119.99291 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00365 * 179.97438 * 16 15 13 19 19 C 1.50693 * 109.47227 * 179.97438 * 18 16 15 20 20 C 1.36218 * 120.66863 * 264.72108 * 19 18 16 21 21 N 1.32571 * 121.87685 * 179.75077 * 20 19 18 22 22 C 1.31270 * 122.77753 * 0.53895 * 21 20 19 23 23 C 1.40400 * 119.88134 * 359.73851 * 22 21 20 24 24 C 1.40380 * 122.08316 * 180.02562 * 23 22 21 25 25 C 1.36162 * 119.52052 * 180.02562 * 24 23 22 26 26 C 1.39385 * 121.08737 * 359.95288 * 25 24 23 27 27 C 1.36217 * 121.02430 * 0.02565 * 26 25 24 28 28 C 1.40241 * 119.47955 * 359.97438 * 27 26 25 29 29 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 30 30 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 31 31 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 32 32 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 33 33 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 34 34 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 35 35 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 36 36 H 1.09000 * 109.46120 * 178.61322 * 12 11 10 37 37 H 0.97005 * 119.99741 * 334.99221 * 15 13 12 38 38 H 1.09001 * 109.47273 * 299.99869 * 18 16 15 39 39 H 1.09006 * 109.47472 * 59.99517 * 18 16 15 40 40 H 1.07995 * 119.05860 * 359.97438 * 20 19 18 41 41 H 1.07995 * 120.06093 * 179.70529 * 22 21 20 42 42 H 1.08008 * 120.23754 * 359.97438 * 24 23 22 43 43 H 1.07993 * 119.45891 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.48918 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.26102 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.59046 * 353.41506 * 29 9 7 47 47 H 1.08998 * 109.58688 * 113.84707 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1958 -3.5676 1.4742 15 7 5.9544 -3.8747 0.3722 16 6 5.6075 -5.1011 -0.0661 17 8 4.4526 -5.4652 0.0020 18 6 6.6546 -6.0200 -0.6409 19 6 6.0115 -7.3191 -1.0526 20 6 6.0114 -8.3913 -0.2124 21 7 5.4486 -9.5437 -0.5480 22 6 4.8646 -9.7384 -1.7074 23 6 4.8145 -8.6980 -2.6488 24 6 4.2016 -8.8551 -3.9019 25 6 4.1835 -7.8110 -4.7757 26 6 4.7631 -6.5869 -4.4464 27 6 5.3663 -6.3976 -3.2397 28 6 5.4041 -7.4507 -2.3144 29 6 4.2482 -2.2197 -0.2010 30 1 -0.4850 -0.8368 -0.0738 31 1 4.5577 0.3873 0.9041 32 1 3.0150 0.2936 1.7896 33 1 5.0019 -0.3775 3.1898 34 1 3.7953 -1.6762 3.0220 35 1 6.3220 -1.3817 1.3344 36 1 6.1096 -2.5274 2.6796 37 1 6.8781 -3.5836 0.3180 38 1 7.1130 -5.5494 -1.5107 39 1 7.4188 -6.2156 0.1114 40 1 6.4801 -8.2987 0.7562 41 1 4.4239 -10.6972 -1.9370 42 1 3.7483 -9.7978 -4.1713 43 1 3.7121 -7.9331 -5.7395 44 1 4.7336 -5.7758 -5.1589 45 1 5.8119 -5.4441 -2.9976 46 1 3.6911 -2.9191 -0.8243 47 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007527467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:21 Heat of formation + Delta-G solvation = 34.575958 kcal Electronic energy + Delta-G solvation = -29112.125620 eV Core-core repulsion = 25259.857175 eV Total energy + Delta-G solvation = -3852.268445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17333 -39.65356 -37.71207 -37.42122 -34.54040 -34.21347 -32.59160 -31.36626 -30.76831 -30.62785 -29.49387 -27.67818 -25.02592 -24.18073 -23.71344 -22.86062 -21.80008 -21.48723 -20.17772 -19.58531 -18.14531 -17.75329 -17.30820 -17.01602 -16.60227 -15.91924 -15.31489 -15.01737 -14.84851 -14.53990 -14.39396 -14.15860 -13.89099 -13.68741 -13.56486 -13.49097 -13.46468 -12.92931 -12.82055 -12.38920 -12.27444 -12.15780 -12.10276 -11.91903 -11.56555 -11.24201 -11.10135 -10.90320 -10.63481 -10.27185 -10.08984 -9.87824 -9.70686 -9.62931 -9.57148 -9.20940 -9.12547 -8.98856 -8.43850 -8.17501 -7.03520 -6.21942 -3.33684 0.18893 0.77566 1.74247 2.73082 2.89633 3.27813 3.38580 3.52493 3.68755 3.95007 4.14303 4.35263 4.51471 4.56111 4.58577 4.70819 4.73625 4.87492 4.93623 5.02198 5.05782 5.09685 5.19469 5.26080 5.28368 5.40157 5.44706 5.53035 5.58698 5.69509 5.80669 5.84821 5.89083 5.93170 6.02079 6.18409 6.21817 6.29290 6.29619 6.40283 6.45845 6.51033 6.61303 6.65258 6.67128 6.76405 6.92361 7.62439 7.82810 8.07664 8.35982 8.47537 9.09459 9.60600 10.21541 11.16141 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002988 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.971345 B = 9368.383361 C =10477.913554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.286 1.286 7 C -0.343 4.343 8 H 0.064 0.936 9 N -0.600 5.600 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.087 0.913 15 N -0.724 5.724 16 C 0.509 3.491 17 O -0.523 6.523 18 C -0.100 4.100 19 C -0.095 4.095 20 C 0.086 3.914 21 N -0.486 5.486 22 C 0.141 3.859 23 C -0.112 4.112 24 C -0.089 4.089 25 C -0.119 4.119 26 C -0.097 4.097 27 C -0.107 4.107 28 C -0.007 4.007 29 C 0.144 3.856 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.395 0.605 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.061 0.939 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.404 -14.834 -5.101 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.217 4.217 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.472 4.472 8 H 0.082 0.918 9 N -0.325 5.325 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.105 0.895 15 N -0.376 5.376 16 C 0.294 3.706 17 O -0.397 6.397 18 C -0.141 4.141 19 C -0.097 4.097 20 C -0.058 4.058 21 N -0.193 5.193 22 C -0.030 4.030 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.125 4.125 28 C -0.013 4.013 29 C 0.017 3.983 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.228 0.772 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.167 0.833 41 H 0.179 0.821 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.080 0.920 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 17.419 -14.063 -4.290 22.795 hybrid contribution 0.568 -0.760 -0.652 1.151 sum 17.987 -14.823 -4.943 23.826 Atomic orbital electron populations 1.70890 1.06032 1.30030 1.49219 1.26261 0.96630 1.01225 0.97556 0.83713 0.74607 0.75632 0.75939 1.22138 1.22753 1.21214 1.20255 0.85415 0.95100 1.46398 0.91795 1.44273 1.07262 1.36798 1.44125 1.21437 0.97221 0.92386 0.89429 1.22003 0.97690 0.98646 0.98873 1.21669 0.98310 0.97262 0.98070 1.21616 0.89803 0.90426 0.96193 0.89533 1.46106 1.12072 1.15336 1.64058 1.20374 0.89671 0.82073 0.78509 1.90793 1.19960 1.74799 1.54194 1.20609 0.97837 0.92714 1.02923 1.19985 0.99791 0.95712 0.94230 1.21974 0.96921 0.88005 0.98863 1.67400 1.08785 1.24336 1.18756 1.23153 0.93883 0.97792 0.88156 1.19005 1.00988 0.94748 0.96615 1.20962 0.98036 0.99504 0.92375 1.20935 0.99599 0.93174 1.00012 1.21019 0.96362 0.97449 0.96748 1.20963 1.00062 0.97978 0.93452 1.17954 0.96009 0.93534 0.93754 1.21129 0.92572 0.91684 0.92964 0.92658 0.95570 0.90671 0.92157 0.91642 0.92050 0.92511 0.77168 0.87745 0.87561 0.83290 0.82082 0.84973 0.85552 0.85453 0.85409 0.92030 0.96296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.22 13.70 55.49 0.76 -28.45 16 2 C -0.02 -0.46 5.24 -17.43 -0.09 -0.55 16 3 Si 1.07 26.60 24.73 -169.99 -4.20 22.39 16 4 H -0.29 -6.79 6.57 56.52 0.37 -6.41 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 6 H -0.29 -6.75 6.80 56.52 0.38 -6.37 16 7 C -0.34 -9.99 9.87 -15.06 -0.15 -10.14 16 8 H 0.06 2.05 8.06 -52.49 -0.42 1.62 16 9 N -0.60 -14.73 2.73 -172.58 -0.47 -15.20 16 10 C 0.12 2.59 4.21 -3.71 -0.02 2.58 16 11 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 12 C -0.11 -1.67 5.36 -26.69 -0.14 -1.81 16 13 C 0.12 2.12 2.59 -68.03 -0.18 1.94 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 15 N -0.72 -9.30 5.08 -53.91 -0.27 -9.57 16 16 C 0.51 7.20 7.79 -10.99 -0.09 7.11 16 17 O -0.52 -10.30 15.70 5.55 0.09 -10.22 16 18 C -0.10 -0.97 5.31 -29.04 -0.15 -1.13 16 19 C -0.09 -1.16 4.40 -104.44 -0.46 -1.62 16 20 C 0.09 1.07 10.72 -17.96 -0.19 0.87 16 21 N -0.49 -6.36 10.30 -13.16 -0.14 -6.50 16 22 C 0.14 1.61 11.05 -16.98 -0.19 1.42 16 23 C -0.11 -1.33 5.74 -106.86 -0.61 -1.94 16 24 C -0.09 -0.86 9.81 -39.52 -0.39 -1.25 16 25 C -0.12 -1.13 9.94 -39.90 -0.40 -1.53 16 26 C -0.10 -1.01 9.95 -39.88 -0.40 -1.41 16 27 C -0.11 -1.27 9.33 -39.56 -0.37 -1.64 16 28 C -0.01 -0.10 5.75 -106.81 -0.61 -0.71 16 29 C 0.14 3.01 6.06 -3.93 -0.02 2.99 16 30 H 0.26 8.35 8.73 -40.82 -0.36 7.99 16 31 H 0.03 0.54 7.10 -51.93 -0.37 0.17 16 32 H 0.08 1.76 4.76 -51.93 -0.25 1.52 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 38 H 0.10 0.78 6.84 -51.93 -0.35 0.43 16 39 H 0.11 0.70 8.05 -51.93 -0.42 0.29 16 40 H 0.15 1.52 8.05 -52.49 -0.42 1.09 16 41 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.13 1.37 6.65 -52.49 -0.35 1.03 16 46 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -37.20 377.20 -9.91 -47.11 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.75 Total: 3.99 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -4.62 Total: -9.24 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.12 Total: -59.73 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -4.20 Total: 22.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.20 -9.91 -47.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007527467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.687 kcal (2) G-P(sol) polarization free energy of solvation -37.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds