Wall clock time and date at job start Tue Mar 31 2020 23:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11 15 15 N 1.46495 * 109.49961 * 181.31820 * 13 12 11 16 16 C 1.34780 * 120.00548 * 154.99922 * 15 13 12 17 17 O 1.21283 * 119.99291 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00365 * 179.97438 * 16 15 13 19 19 C 1.50693 * 109.47227 * 179.97438 * 18 16 15 20 20 C 1.36218 * 120.66863 * 264.72108 * 19 18 16 21 21 N 1.32571 * 121.87685 * 179.75077 * 20 19 18 22 22 C 1.31270 * 122.77753 * 0.53895 * 21 20 19 23 23 C 1.40400 * 119.88134 * 359.73851 * 22 21 20 24 24 C 1.40380 * 122.08316 * 180.02562 * 23 22 21 25 25 C 1.36162 * 119.52052 * 180.02562 * 24 23 22 26 26 C 1.39385 * 121.08737 * 359.95288 * 25 24 23 27 27 C 1.36217 * 121.02430 * 0.02565 * 26 25 24 28 28 C 1.40241 * 119.47955 * 359.97438 * 27 26 25 29 29 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 30 30 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 31 31 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 32 32 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 33 33 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 34 34 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 35 35 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 36 36 H 1.09000 * 109.46120 * 178.61322 * 12 11 10 37 37 H 0.97005 * 119.99741 * 334.99221 * 15 13 12 38 38 H 1.09001 * 109.47273 * 299.99869 * 18 16 15 39 39 H 1.09006 * 109.47472 * 59.99517 * 18 16 15 40 40 H 1.07995 * 119.05860 * 359.97438 * 20 19 18 41 41 H 1.07995 * 120.06093 * 179.70529 * 22 21 20 42 42 H 1.08008 * 120.23754 * 359.97438 * 24 23 22 43 43 H 1.07993 * 119.45891 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.48918 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.26102 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.59046 * 353.41506 * 29 9 7 47 47 H 1.08998 * 109.58688 * 113.84707 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1958 -3.5676 1.4742 15 7 5.9544 -3.8747 0.3722 16 6 5.6075 -5.1011 -0.0661 17 8 4.4526 -5.4652 0.0020 18 6 6.6546 -6.0200 -0.6409 19 6 6.0115 -7.3191 -1.0526 20 6 6.0114 -8.3913 -0.2124 21 7 5.4486 -9.5437 -0.5480 22 6 4.8646 -9.7384 -1.7074 23 6 4.8145 -8.6980 -2.6488 24 6 4.2016 -8.8551 -3.9019 25 6 4.1835 -7.8110 -4.7757 26 6 4.7631 -6.5869 -4.4464 27 6 5.3663 -6.3976 -3.2397 28 6 5.4041 -7.4507 -2.3144 29 6 4.2482 -2.2197 -0.2010 30 1 -0.4850 -0.8368 -0.0738 31 1 4.5577 0.3873 0.9041 32 1 3.0150 0.2936 1.7896 33 1 5.0019 -0.3775 3.1898 34 1 3.7953 -1.6762 3.0220 35 1 6.3220 -1.3817 1.3344 36 1 6.1096 -2.5274 2.6796 37 1 6.8781 -3.5836 0.3180 38 1 7.1130 -5.5494 -1.5107 39 1 7.4188 -6.2156 0.1114 40 1 6.4801 -8.2987 0.7562 41 1 4.4239 -10.6972 -1.9370 42 1 3.7483 -9.7978 -4.1713 43 1 3.7121 -7.9331 -5.7395 44 1 4.7336 -5.7758 -5.1589 45 1 5.8119 -5.4441 -2.9976 46 1 3.6911 -2.9191 -0.8243 47 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007527467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:20 Heat of formation + Delta-G solvation = 8.036674 kcal Electronic energy + Delta-G solvation = -29113.276450 eV Core-core repulsion = 25259.857175 eV Total energy + Delta-G solvation = -3853.419275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.03880 -40.86824 -39.19370 -38.27431 -36.06755 -35.16363 -34.38153 -32.62802 -32.20120 -31.58517 -30.74063 -28.67888 -26.93064 -25.07811 -24.57235 -24.16044 -23.55388 -22.55681 -21.44177 -21.04470 -19.39909 -18.94533 -18.58990 -18.11511 -17.57451 -17.17599 -16.72176 -16.34416 -15.97223 -15.72293 -15.44203 -15.42629 -15.35456 -15.07372 -14.82021 -14.61269 -14.48516 -14.31479 -14.02511 -13.70982 -13.67662 -13.43631 -13.11568 -12.97410 -12.74885 -12.68841 -12.52149 -12.06136 -12.00464 -11.72758 -11.58444 -11.37841 -11.30474 -11.20438 -10.85232 -10.67512 -10.49594 -10.17786 -10.05601 -9.14362 -9.00836 -8.52740 -5.64449 -0.63892 -0.08199 0.90121 1.39984 1.55795 1.62404 1.74652 2.02027 2.22928 2.51844 3.05351 3.09209 3.34502 3.39159 3.55081 3.74021 3.76368 3.78671 3.88299 3.94898 4.01724 4.05804 4.13654 4.21029 4.29229 4.30513 4.36582 4.42405 4.54182 4.64172 4.64879 4.70060 4.77272 4.89781 4.91760 4.99257 5.03531 5.06486 5.09258 5.10754 5.19095 5.36605 5.42790 5.46835 5.53592 5.64287 5.71210 5.89619 6.19197 6.59588 6.88361 6.95629 7.31631 7.49754 8.01321 8.77491 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002988 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.971345 B = 9368.383361 C =10477.913554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 1.117 2.883 4 H -0.261 1.261 5 H -0.307 1.307 6 H -0.260 1.260 7 C -0.337 4.337 8 H 0.008 0.992 9 N -0.619 5.619 10 C 0.110 3.890 11 C -0.128 4.128 12 C -0.104 4.104 13 C 0.138 3.862 14 H 0.041 0.959 15 N -0.705 5.705 16 C 0.508 3.492 17 O -0.587 6.587 18 C -0.087 4.087 19 C -0.110 4.110 20 C 0.069 3.931 21 N -0.513 5.513 22 C 0.138 3.862 23 C -0.134 4.134 24 C -0.088 4.088 25 C -0.127 4.127 26 C -0.103 4.103 27 C -0.131 4.131 28 C -0.033 4.033 29 C 0.146 3.854 30 H 0.243 0.757 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.421 0.579 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.192 0.808 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.144 0.856 45 H 0.132 0.868 46 H 0.016 0.984 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.592 -13.957 -4.961 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.264 4.264 3 Si 0.940 3.060 4 H -0.187 1.187 5 H -0.235 1.235 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.026 0.974 9 N -0.345 5.345 10 C -0.013 4.013 11 C -0.168 4.168 12 C -0.142 4.142 13 C 0.032 3.968 14 H 0.060 0.940 15 N -0.358 5.358 16 C 0.295 3.705 17 O -0.466 6.466 18 C -0.127 4.127 19 C -0.112 4.112 20 C -0.074 4.074 21 N -0.220 5.220 22 C -0.033 4.033 23 C -0.136 4.136 24 C -0.108 4.108 25 C -0.144 4.144 26 C -0.122 4.122 27 C -0.149 4.149 28 C -0.038 4.038 29 C 0.019 3.981 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.259 0.741 38 H 0.149 0.851 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.209 0.791 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.035 0.965 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 21.709 -13.209 -4.129 25.745 hybrid contribution -0.815 -1.185 -0.781 1.636 sum 20.894 -14.394 -4.910 25.842 Atomic orbital electron populations 1.71029 1.07451 1.28831 1.52405 1.27768 0.96443 1.05239 0.96973 0.83152 0.74132 0.70804 0.77884 1.18693 1.23549 1.18477 1.20019 0.87905 0.93170 1.45586 0.97364 1.44347 1.05992 1.38375 1.45752 1.21635 0.97223 0.92438 0.90049 1.21941 0.97861 0.99119 0.97843 1.21643 0.97711 0.96462 0.98395 1.21129 0.90232 0.90635 0.94846 0.94041 1.45828 1.12493 1.14383 1.63110 1.21190 0.89624 0.82484 0.77193 1.90781 1.23059 1.76095 1.56696 1.20649 0.96730 0.90577 1.04752 1.20246 1.00169 0.96664 0.94142 1.22323 0.97244 0.88177 0.99635 1.67420 1.09905 1.24985 1.19685 1.23683 0.93140 0.98893 0.87581 1.19358 1.01630 0.94809 0.97841 1.21367 0.97108 1.00950 0.91367 1.21319 0.99264 0.92645 1.01223 1.21382 0.95613 0.98551 0.96632 1.21132 1.01425 0.98158 0.94158 1.18322 0.96616 0.94351 0.94498 1.21169 0.92044 0.90636 0.94203 0.94768 0.92924 0.93022 0.87992 0.94107 0.88876 0.89120 0.74092 0.85060 0.83597 0.81732 0.79122 0.81837 0.82754 0.83826 0.85032 0.96514 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.52 13.70 21.65 0.30 -63.22 16 2 C -0.07 -4.32 5.24 84.86 0.44 -3.87 16 3 Si 1.12 53.16 24.73 68.60 1.70 54.86 16 4 H -0.26 -11.05 6.57 99.48 0.65 -10.40 16 5 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 6 H -0.26 -11.18 6.80 99.48 0.68 -10.50 16 7 C -0.34 -20.72 9.87 84.03 0.83 -19.89 16 8 H 0.01 0.60 8.06 -2.91 -0.02 0.57 16 9 N -0.62 -30.66 2.73 -699.92 -1.91 -32.57 16 10 C 0.11 4.48 4.21 86.36 0.36 4.84 16 11 C -0.13 -3.95 6.08 30.67 0.19 -3.76 16 12 C -0.10 -2.56 5.36 30.62 0.16 -2.39 16 13 C 0.14 4.55 2.59 44.93 0.12 4.66 16 14 H 0.04 1.76 7.58 -2.39 -0.02 1.74 16 15 N -0.71 -16.51 5.08 -442.85 -2.25 -18.76 16 16 C 0.51 14.06 7.79 87.65 0.68 14.74 16 17 O -0.59 -24.31 15.70 -3.04 -0.05 -24.36 16 18 C -0.09 -1.53 5.31 29.10 0.15 -1.37 16 19 C -0.11 -2.67 4.40 -19.75 -0.09 -2.76 16 20 C 0.07 1.71 10.72 84.11 0.90 2.62 16 21 N -0.51 -13.51 10.30 -195.54 -2.01 -15.53 16 22 C 0.14 3.11 11.05 85.30 0.94 4.05 16 23 C -0.13 -3.20 5.74 -21.31 -0.12 -3.32 16 24 C -0.09 -1.61 9.81 22.31 0.22 -1.39 16 25 C -0.13 -2.25 9.94 22.06 0.22 -2.03 16 26 C -0.10 -2.12 9.95 22.07 0.22 -1.90 16 27 C -0.13 -3.14 9.33 22.29 0.21 -2.93 16 28 C -0.03 -0.86 5.75 -21.28 -0.12 -0.98 16 29 C 0.15 6.14 6.06 86.22 0.52 6.66 16 30 H 0.24 16.59 8.73 -92.71 -0.81 15.78 16 31 H 0.05 1.89 7.10 -2.39 -0.02 1.87 16 32 H 0.05 2.33 4.76 -2.39 -0.01 2.32 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.42 5.61 8.60 -92.70 -0.80 4.82 16 38 H 0.13 1.60 6.84 -2.39 -0.02 1.59 16 39 H 0.15 1.39 8.05 -2.38 -0.02 1.37 16 40 H 0.17 3.26 8.05 -2.91 -0.02 3.23 16 41 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.13 2.84 6.65 -2.91 -0.02 2.82 16 46 H 0.02 0.82 7.93 -2.39 -0.02 0.80 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -91.02 377.20 1.69 -89.33 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.07 Total: 19.29 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.84 Total: -9.04 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -5.87 Total: -130.07 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 53.16 SS G_CDS: 1.70 Total: 54.86 kcal Total: -91.02 1.69 -89.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007527467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.372 kcal (2) G-P(sol) polarization free energy of solvation -91.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds