Wall clock time and date at job start Tue Mar 31 2020 23:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47184 * 299.99610 * 3 2 1 6 6 H 1.48495 * 109.47270 * 59.99855 * 3 2 1 7 7 C 1.38804 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 197.36743 * 7 2 1 9 9 N 1.36945 * 120.00062 * 17.36975 * 7 2 1 10 10 C 1.46923 * 120.62717 * 27.66767 * 9 7 2 11 11 C 1.53193 * 108.77640 * 126.41569 * 10 9 7 12 12 C 1.53043 * 109.31126 * 54.63033 * 11 10 9 13 13 C 1.53037 * 109.53952 * 298.63764 * 12 11 10 14 14 H 1.09008 * 109.49766 * 301.38093 * 13 12 11 15 15 N 1.46499 * 109.50004 * 181.31859 * 13 12 11 16 16 C 1.34775 * 120.00308 * 154.99769 * 15 13 12 17 17 O 1.21279 * 119.99929 * 0.02562 * 16 15 13 18 18 C 1.50708 * 119.99906 * 180.27264 * 16 15 13 19 19 C 1.50695 * 109.46836 * 179.72459 * 18 16 15 20 20 C 1.36169 * 120.19847 * 265.00342 * 19 18 16 21 21 C 1.39316 * 120.87456 * 179.97438 * 20 19 18 22 22 C 1.36111 * 121.06395 * 0.02562 * 21 20 19 23 23 C 1.40553 * 119.74869 * 359.97438 * 22 21 20 24 24 N 1.33694 * 121.07951 * 179.97438 * 23 22 21 25 25 C 1.31078 * 121.31783 * 180.02562 * 24 23 22 26 26 C 1.39343 * 121.75967 * 359.97438 * 25 24 23 27 27 C 1.36576 * 119.93170 * 0.02562 * 26 25 24 28 28 C 1.40393 * 120.19235 * 84.72354 * 19 18 16 29 29 C 1.46919 * 120.63036 * 207.68831 * 9 7 2 30 30 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58968 * 6.62720 * 10 9 7 32 32 H 1.08998 * 109.70662 * 246.26971 * 10 9 7 33 33 H 1.09001 * 109.49528 * 294.68622 * 11 10 9 34 34 H 1.08992 * 109.50168 * 174.58530 * 11 10 9 35 35 H 1.08999 * 109.45806 * 178.61541 * 12 11 10 36 36 H 1.09002 * 109.45111 * 58.65378 * 12 11 10 37 37 H 0.97006 * 119.99723 * 334.99586 * 15 13 12 38 38 H 1.08993 * 109.47175 * 299.72879 * 18 16 15 39 39 H 1.09001 * 109.46617 * 59.73130 * 18 16 15 40 40 H 1.08005 * 119.56480 * 359.97438 * 20 19 18 41 41 H 1.07990 * 119.46790 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.12707 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.12231 * 180.02562 * 25 24 23 44 44 H 1.07991 * 120.03134 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.91855 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.58645 * 113.80074 * 29 9 7 47 47 H 1.08998 * 109.59125 * 353.37764 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3724 -2.3612 -0.3530 10 6 0.2279 -2.3348 -1.2740 11 6 0.5007 -3.3053 -2.4275 12 6 0.8185 -4.6903 -1.8592 13 6 2.0741 -4.6103 -0.9880 14 1 2.9082 -4.2411 -1.5848 15 7 2.3956 -5.9424 -0.4699 16 6 3.6626 -6.2424 -0.1217 17 8 4.5365 -5.4094 -0.2367 18 6 3.9943 -7.6148 0.4054 19 6 5.4677 -7.6925 0.7117 20 6 6.3336 -8.1946 -0.2114 21 6 7.6985 -8.2725 0.0567 22 6 8.2056 -7.8504 1.2472 23 6 7.3437 -7.3259 2.2257 24 7 7.8131 -6.9040 3.4043 25 6 7.0134 -6.4146 4.3204 26 6 5.6394 -6.3087 4.1140 27 6 5.0941 -6.7216 2.9318 28 6 5.9565 -7.2423 1.9484 29 6 1.8192 -3.6546 0.1818 30 1 -0.4849 0.8401 -0.0004 31 1 0.0987 -1.3266 -1.6675 32 1 -0.6757 -2.6395 -0.7461 33 1 1.3495 -2.9478 -3.0105 34 1 -0.3800 -3.3675 -3.0666 35 1 0.9889 -5.3886 -2.6786 36 1 -0.0207 -5.0364 -1.2558 37 1 1.6965 -6.6085 -0.3776 38 1 3.4236 -7.8024 1.3149 39 1 3.7391 -8.3634 -0.3446 40 1 5.9574 -8.5370 -1.1642 41 1 8.3648 -8.6751 -0.6918 42 1 9.2663 -7.9181 1.4392 43 1 7.4308 -6.0837 5.2600 44 1 5.0065 -5.9007 4.8880 45 1 4.0314 -6.6465 2.7547 46 1 1.0467 -4.0685 0.8300 47 1 2.7398 -3.5172 0.7488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007916406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:00 Heat of formation + Delta-G solvation = 13.075748 kcal Electronic energy + Delta-G solvation = -29048.606792 eV Core-core repulsion = 25195.406027 eV Total energy + Delta-G solvation = -3853.200764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96868 -40.80939 -39.04677 -38.03241 -35.91914 -35.07213 -34.14004 -32.37570 -32.34546 -31.47540 -30.49894 -28.31367 -27.27137 -25.21049 -24.55744 -23.95909 -23.82627 -22.22592 -21.30782 -20.76937 -19.08417 -18.74080 -18.12421 -18.00767 -17.89219 -17.14668 -16.62929 -16.22824 -15.78235 -15.56546 -15.38158 -15.30598 -15.14327 -14.97341 -14.71206 -14.57963 -14.23758 -14.12917 -13.98012 -13.83935 -13.41086 -13.06435 -12.95972 -12.79544 -12.62235 -12.55588 -12.51001 -12.14896 -12.11401 -11.99093 -11.76412 -11.57228 -11.48220 -11.30810 -10.83876 -10.63645 -10.50042 -10.07899 -9.70801 -9.14463 -8.71308 -7.93453 -5.38476 -0.57683 -0.11485 0.98773 1.40344 1.42505 1.53752 1.70340 1.94227 2.29013 2.49340 3.13665 3.20549 3.37692 3.47061 3.70123 3.81094 3.84386 3.88098 3.88647 4.05426 4.12223 4.14114 4.24843 4.26763 4.34666 4.48048 4.49946 4.56250 4.58301 4.63908 4.81358 4.87065 4.91748 5.01820 5.03423 5.07959 5.12736 5.14505 5.19476 5.28137 5.41334 5.47737 5.49373 5.58949 5.60931 5.61319 5.75764 5.93832 6.34353 6.66954 6.91959 7.10606 7.38316 7.80851 8.29578 9.12009 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003036 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.623417 B = 9220.966687 C =10512.142085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.041 4.041 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.268 4.268 8 H 0.049 0.951 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.143 3.857 14 H 0.052 0.948 15 N -0.707 5.707 16 C 0.508 3.492 17 O -0.582 6.582 18 C -0.096 4.096 19 C -0.055 4.055 20 C -0.112 4.112 21 C -0.094 4.094 22 C -0.117 4.117 23 C 0.095 3.905 24 N -0.505 5.505 25 C 0.121 3.879 26 C -0.180 4.180 27 C -0.069 4.069 28 C -0.107 4.107 29 C 0.146 3.854 30 H 0.253 0.747 31 H 0.053 0.947 32 H 0.007 0.993 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.418 0.582 38 H 0.128 0.872 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.141 0.859 43 H 0.187 0.813 44 H 0.163 0.837 45 H 0.147 0.853 46 H 0.023 0.977 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -23.213 0.782 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.237 4.237 3 Si 0.789 3.211 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.398 4.398 8 H 0.067 0.933 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.141 4.141 13 C 0.036 3.964 14 H 0.070 0.930 15 N -0.360 5.360 16 C 0.295 3.705 17 O -0.461 6.461 18 C -0.135 4.135 19 C -0.056 4.056 20 C -0.130 4.130 21 C -0.113 4.113 22 C -0.136 4.136 23 C -0.025 4.025 24 N -0.213 5.213 25 C -0.051 4.051 26 C -0.199 4.199 27 C -0.094 4.094 28 C -0.109 4.109 29 C 0.020 3.980 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.256 0.744 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.178 0.822 42 H 0.159 0.841 43 H 0.203 0.797 44 H 0.181 0.819 45 H 0.165 0.835 46 H 0.041 0.959 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.784 -22.599 0.763 23.914 hybrid contribution -0.717 1.424 0.279 1.618 sum 7.067 -21.175 1.042 22.348 Atomic orbital electron populations 1.70165 1.06261 1.25938 1.54899 1.25660 0.96093 1.01021 1.00930 0.85307 0.78249 0.80157 0.77348 1.20221 1.20854 1.21273 1.19379 0.92443 0.86525 1.41437 0.93334 1.44226 1.36025 1.01577 1.51358 1.20719 0.87538 0.98177 0.88999 1.22023 1.01261 0.95539 0.98224 1.21601 0.95936 0.97416 0.99141 1.21186 0.97707 0.82402 0.95127 0.93007 1.45887 1.09832 1.14640 1.65644 1.21153 0.82095 0.90239 0.76971 1.90772 1.48539 1.51966 1.54851 1.20788 0.92899 0.94205 1.05597 1.19363 0.95750 0.97668 0.92816 1.21178 0.93345 0.98977 0.99469 1.21231 0.95854 0.97604 0.96625 1.21016 1.00067 0.99393 0.93089 1.19256 0.91480 0.98646 0.93137 1.68047 1.39715 1.11764 1.01793 1.23494 0.90636 0.92675 0.98315 1.22233 0.97161 1.01384 0.99154 1.21760 1.00713 0.94238 0.92727 1.18904 0.94345 1.01339 0.96279 1.21208 0.96185 0.86455 0.94197 0.93807 0.92878 0.97536 0.93699 0.89715 0.89327 0.90368 0.74429 0.85431 0.83500 0.82857 0.82208 0.84140 0.79661 0.81925 0.83536 0.95889 0.95651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 11.19 21.65 0.24 -54.81 16 2 C -0.04 -2.36 4.91 84.86 0.42 -1.95 16 3 Si 0.96 46.66 29.59 68.60 2.03 48.69 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.27 -15.70 9.59 84.03 0.81 -14.89 16 8 H 0.05 2.95 7.89 -2.91 -0.02 2.92 16 9 N -0.61 -31.67 2.99 -699.13 -2.09 -33.76 16 10 C 0.17 8.10 5.31 86.36 0.46 8.56 16 11 C -0.13 -4.60 6.08 30.67 0.19 -4.41 16 12 C -0.10 -2.87 5.35 30.62 0.16 -2.70 16 13 C 0.14 4.80 2.60 45.07 0.12 4.92 16 14 H 0.05 2.13 7.58 -2.38 -0.02 2.11 16 15 N -0.71 -16.80 5.08 -442.16 -2.25 -19.04 16 16 C 0.51 13.46 7.79 87.66 0.68 14.14 16 17 O -0.58 -22.76 15.70 -3.03 -0.05 -22.81 16 18 C -0.10 -1.55 5.24 29.10 0.15 -1.40 16 19 C -0.05 -1.22 4.38 -19.82 -0.09 -1.30 16 20 C -0.11 -2.15 9.58 22.05 0.21 -1.94 16 21 C -0.09 -1.78 9.94 22.03 0.22 -1.56 16 22 C -0.12 -2.78 9.98 22.34 0.22 -2.56 16 23 C 0.10 2.71 6.60 40.28 0.27 2.97 16 24 N -0.50 -14.26 10.34 -188.63 -1.95 -16.21 16 25 C 0.12 2.77 11.15 85.07 0.95 3.71 16 26 C -0.18 -3.89 10.03 22.15 0.22 -3.67 16 27 C -0.07 -1.65 9.36 22.50 0.21 -1.44 16 28 C -0.11 -2.84 5.74 -21.27 -0.12 -2.97 16 29 C 0.15 6.38 6.09 86.36 0.53 6.91 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.05 2.88 6.04 -2.39 -0.01 2.87 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.42 6.12 8.60 -92.70 -0.80 5.32 16 38 H 0.13 1.46 6.73 -2.39 -0.02 1.45 16 39 H 0.15 1.19 8.04 -2.39 -0.02 1.17 16 40 H 0.15 1.99 8.05 -2.91 -0.02 1.97 16 41 H 0.16 1.90 8.06 -2.92 -0.02 1.88 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 45 H 0.15 2.98 6.57 -2.91 -0.02 2.96 16 46 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.02 1.23 7.93 -2.39 -0.02 1.21 16 Total: -1.00 -82.57 382.76 1.72 -80.85 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.19 Total: 16.68 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.60 Total: 0.43 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -6.05 Total: -123.83 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -82.57 1.72 -80.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007916406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.921 kcal (2) G-P(sol) polarization free energy of solvation -82.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds