Wall clock time and date at job start Tue Mar 31 2020 22:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 240.00188 * 3 2 1 6 6 H 1.48505 * 109.46857 * 120.00511 * 3 2 1 7 7 C 1.38814 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 204.22080 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.22367 * 7 2 1 10 10 C 1.46930 * 120.63047 * 29.24542 * 9 7 2 11 11 C 1.53187 * 108.77447 * 126.36972 * 10 9 7 12 12 C 1.53044 * 109.31450 * 54.63251 * 11 10 9 13 13 C 1.53042 * 109.53662 * 298.63496 * 12 11 10 14 14 H 1.08994 * 109.49679 * 301.40966 * 13 12 11 15 15 N 1.46499 * 109.49455 * 181.31498 * 13 12 11 16 16 C 1.34778 * 119.99533 * 154.99917 * 15 13 12 17 17 O 1.21273 * 120.00474 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99710 * 179.97438 * 16 15 13 19 19 C 1.50694 * 109.47106 * 179.97438 * 18 16 15 20 20 C 1.39386 * 119.48673 * 90.00428 * 19 18 16 21 21 C 1.36169 * 121.07993 * 179.97438 * 20 19 18 22 22 C 1.40374 * 119.52176 * 359.97438 * 21 20 19 23 23 C 1.40428 * 122.07419 * 180.02562 * 22 21 20 24 24 N 1.31253 * 119.87742 * 179.97438 * 23 22 21 25 25 C 1.32603 * 122.77334 * 359.97438 * 24 23 22 26 26 C 1.36172 * 121.88053 * 0.02562 * 25 24 23 27 27 C 1.40688 * 118.66835 * 359.97438 * 26 25 24 28 28 C 1.36216 * 119.49365 * 269.72766 * 19 18 16 29 29 C 1.46926 * 120.62610 * 208.96279 * 9 7 2 30 30 H 0.96998 * 119.99374 * 185.77013 * 1 2 3 31 31 H 1.09001 * 109.58218 * 246.15690 * 10 9 7 32 32 H 1.08998 * 109.58258 * 6.43678 * 10 9 7 33 33 H 1.09001 * 109.49858 * 174.58638 * 11 10 9 34 34 H 1.09006 * 109.49530 * 294.67981 * 11 10 9 35 35 H 1.09002 * 109.45884 * 58.65430 * 12 11 10 36 36 H 1.09004 * 109.46009 * 178.61596 * 12 11 10 37 37 H 0.97000 * 120.00026 * 335.00171 * 15 13 12 38 38 H 1.09008 * 109.47234 * 300.00277 * 18 16 15 39 39 H 1.09002 * 109.46745 * 60.00031 * 18 16 15 40 40 H 1.07998 * 119.45637 * 359.95415 * 20 19 18 41 41 H 1.08007 * 120.23508 * 180.02562 * 21 20 19 42 42 H 1.07996 * 120.06317 * 359.95654 * 23 22 21 43 43 H 1.08000 * 119.05538 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.66257 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.25748 * 0.02562 * 28 19 18 46 46 H 1.08991 * 109.58972 * 353.42219 * 29 9 7 47 47 H 1.09010 * 109.58337 * 113.84630 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0190 -1.2434 0.3831 9 7 1.4161 -2.3357 -0.4877 10 6 0.3974 -2.2524 -1.5432 11 6 0.8093 -3.1691 -2.6993 12 6 1.0461 -4.5833 -2.1644 13 6 2.1818 -4.5591 -1.1389 14 1 3.0862 -4.1702 -1.6068 15 7 2.4287 -5.9181 -0.6507 16 6 3.6400 -6.2483 -0.1606 17 8 4.5257 -5.4207 -0.1242 18 6 3.8939 -7.6462 0.3422 19 6 5.3149 -7.7535 0.8321 20 6 5.6045 -7.4680 2.1653 21 6 6.8768 -7.5550 2.6425 22 6 7.9148 -7.9388 1.7789 23 6 9.2456 -8.0463 2.2141 24 7 10.1823 -8.4095 1.3695 25 6 9.9331 -8.6875 0.0971 26 6 8.6766 -8.6132 -0.4225 27 6 7.6186 -8.2303 0.4220 28 6 6.2958 -8.1334 -0.0335 29 6 1.7895 -3.6586 0.0310 30 1 -0.4849 -0.8358 0.0845 31 1 -0.5660 -2.5739 -1.1474 32 1 0.3221 -1.2245 -1.8980 33 1 0.0162 -3.1908 -3.4467 34 1 1.7267 -2.7932 -3.1525 35 1 0.1357 -4.9490 -1.6894 36 1 1.3155 -5.2432 -2.9891 37 1 1.7204 -6.5802 -0.6801 38 1 3.2092 -7.8678 1.1609 39 1 3.7344 -8.3581 -0.4676 40 1 4.8066 -7.1726 2.8306 41 1 7.0857 -7.3310 3.6783 42 1 9.4979 -7.8303 3.2417 43 1 10.7501 -8.9811 -0.5453 44 1 8.4961 -8.8435 -1.4621 45 1 6.0569 -8.3557 -1.0630 46 1 2.6341 -3.5588 0.7127 47 1 0.9419 -4.0972 0.5578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007917516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:06 Heat of formation + Delta-G solvation = 28.974411 kcal Electronic energy + Delta-G solvation = -28401.984215 eV Core-core repulsion = 24549.472868 eV Total energy + Delta-G solvation = -3852.511347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07122 -39.81229 -38.00156 -37.23086 -34.51574 -33.33578 -32.88723 -32.45799 -30.45400 -30.03248 -29.25455 -27.64169 -25.12031 -24.20845 -23.40054 -22.52899 -22.30003 -21.76992 -20.25823 -19.38217 -18.02930 -17.41858 -17.34630 -16.95271 -16.80992 -15.78473 -15.25640 -15.12458 -14.54204 -14.46339 -14.33320 -14.21605 -13.94272 -13.74897 -13.66297 -13.56084 -13.39122 -12.87788 -12.76153 -12.46356 -12.16297 -12.10956 -12.04602 -11.91214 -11.27844 -11.20616 -10.76258 -10.71023 -10.42150 -10.39730 -10.13780 -10.07137 -9.99064 -9.74144 -9.69155 -9.33737 -9.09267 -8.93419 -8.32047 -8.27299 -6.88612 -6.06265 -3.24607 0.15263 0.67838 1.72382 2.73708 2.75880 3.35516 3.52526 3.55031 3.73165 3.89087 4.16743 4.25936 4.33983 4.58845 4.61010 4.63702 4.76122 4.84427 4.93611 5.06193 5.13773 5.17035 5.21431 5.30360 5.35081 5.37507 5.48586 5.53987 5.57173 5.58926 5.82852 5.84801 5.91101 6.01398 6.09565 6.13090 6.27151 6.34560 6.40512 6.41327 6.52253 6.55030 6.61426 6.68600 6.85446 7.03542 7.15410 7.64405 7.74684 8.04609 8.36742 8.58832 9.11222 9.84717 10.27213 11.21924 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.002429 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.237519 B =11525.895361 C =12559.012915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.023 4.023 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.348 4.348 8 H 0.056 0.944 9 N -0.594 5.594 10 C 0.147 3.853 11 C -0.135 4.135 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.085 0.915 15 N -0.724 5.724 16 C 0.510 3.490 17 O -0.526 6.526 18 C -0.109 4.109 19 C -0.036 4.036 20 C -0.100 4.100 21 C -0.087 4.087 22 C -0.113 4.113 23 C 0.146 3.854 24 N -0.493 5.493 25 C 0.071 3.929 26 C -0.153 4.153 27 C -0.021 4.021 28 C -0.102 4.102 29 C 0.145 3.855 30 H 0.268 0.732 31 H 0.018 0.982 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.395 0.605 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.163 0.837 43 H 0.151 0.849 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.058 0.942 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.153 -22.254 -0.173 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.225 4.225 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.477 4.477 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.174 4.174 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.104 0.896 15 N -0.375 5.375 16 C 0.294 3.706 17 O -0.401 6.401 18 C -0.149 4.149 19 C -0.037 4.037 20 C -0.118 4.118 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.025 4.025 24 N -0.201 5.201 25 C -0.072 4.072 26 C -0.173 4.173 27 C -0.026 4.026 28 C -0.120 4.120 29 C 0.018 3.982 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.228 0.772 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.180 0.820 43 H 0.168 0.832 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.077 0.923 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 10.557 -20.056 -0.061 22.665 hybrid contribution -1.118 -1.960 -0.296 2.276 sum 9.440 -22.016 -0.356 23.957 Atomic orbital electron populations 1.70792 1.06552 1.30220 1.48079 1.25875 0.96537 1.01456 0.98603 0.83530 0.74774 0.75931 0.76341 1.21076 1.21983 1.21923 1.19994 0.97132 0.88127 1.42442 0.92639 1.44044 1.46646 1.01136 1.40010 1.21002 0.90540 0.99052 0.87254 1.22063 1.01178 0.94818 0.99381 1.21670 0.97678 0.98365 0.97549 1.21616 0.99011 0.80747 0.96523 0.89644 1.46130 1.13054 1.14058 1.64272 1.20367 0.82621 0.89464 0.78100 1.90780 1.43796 1.51278 1.54244 1.20799 0.94977 0.95990 1.03088 1.19143 0.94315 0.96576 0.93708 1.20816 0.97305 0.98666 0.95054 1.20934 0.91986 0.98257 0.99481 1.19036 0.95776 1.02521 0.94147 1.23201 0.87364 0.92809 0.99175 1.67414 1.37030 1.11586 1.04075 1.22138 0.96026 0.97334 0.91679 1.21900 0.93460 1.01366 1.00586 1.18115 0.94149 0.97311 0.92994 1.20750 0.91145 1.00635 0.99437 1.21086 0.97619 0.86402 0.93137 0.92136 0.96433 0.90152 0.92472 0.92077 0.92226 0.92831 0.77197 0.87636 0.87870 0.85440 0.84756 0.82035 0.83155 0.84581 0.85303 0.92316 0.96788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.48 12.45 55.49 0.69 -26.79 16 2 C -0.02 -0.66 4.69 -17.43 -0.08 -0.74 16 3 Si 1.06 25.76 29.98 -169.99 -5.10 20.66 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.35 -9.98 9.48 -15.06 -0.14 -10.12 16 8 H 0.06 1.64 7.94 -52.49 -0.42 1.23 16 9 N -0.59 -15.07 2.84 -172.58 -0.49 -15.56 16 10 C 0.15 3.38 4.70 -3.71 -0.02 3.37 16 11 C -0.13 -2.43 6.08 -26.61 -0.16 -2.60 16 12 C -0.11 -1.76 5.36 -26.69 -0.14 -1.90 16 13 C 0.13 2.20 2.59 -68.03 -0.18 2.02 16 14 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 15 N -0.72 -9.50 5.08 -53.91 -0.27 -9.77 16 16 C 0.51 7.09 7.79 -10.98 -0.09 7.01 16 17 O -0.53 -10.09 15.70 5.56 0.09 -10.00 16 18 C -0.11 -0.98 5.80 -29.03 -0.17 -1.15 16 19 C -0.04 -0.39 4.34 -104.93 -0.46 -0.84 16 20 C -0.10 -1.06 9.58 -39.90 -0.38 -1.44 16 21 C -0.09 -0.87 9.81 -39.52 -0.39 -1.25 16 22 C -0.11 -1.26 5.74 -106.86 -0.61 -1.87 16 23 C 0.15 1.51 11.05 -16.98 -0.19 1.32 16 24 N -0.49 -5.69 10.30 -13.16 -0.14 -5.83 16 25 C 0.07 0.72 11.07 -17.96 -0.20 0.52 16 26 C -0.15 -1.53 9.88 -39.40 -0.39 -1.91 16 27 C -0.02 -0.24 5.75 -106.81 -0.61 -0.85 16 28 C -0.10 -1.11 9.41 -39.56 -0.37 -1.48 16 29 C 0.15 3.14 6.06 -3.93 -0.02 3.11 16 30 H 0.27 8.05 6.72 -40.82 -0.27 7.78 16 31 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 32 H 0.08 2.08 6.38 -51.93 -0.33 1.75 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.39 3.72 8.60 -40.82 -0.35 3.37 16 38 H 0.11 0.71 8.08 -51.92 -0.42 0.29 16 39 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.06 1.40 7.93 -51.93 -0.41 0.98 16 47 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -36.00 385.06 -10.89 -46.89 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.87 Total: 3.41 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -4.60 Total: -8.81 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.21 Total: -57.95 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.10 Total: 20.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.00 -10.89 -46.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007917516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.864 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds