Wall clock time and date at job start Tue Mar 31 2020 22:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 240.00188 * 3 2 1 6 6 H 1.48505 * 109.46857 * 120.00511 * 3 2 1 7 7 C 1.38814 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 204.22080 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.22367 * 7 2 1 10 10 C 1.46930 * 120.63047 * 29.24542 * 9 7 2 11 11 C 1.53187 * 108.77447 * 126.36972 * 10 9 7 12 12 C 1.53044 * 109.31450 * 54.63251 * 11 10 9 13 13 C 1.53042 * 109.53662 * 298.63496 * 12 11 10 14 14 H 1.08994 * 109.49679 * 301.40966 * 13 12 11 15 15 N 1.46499 * 109.49455 * 181.31498 * 13 12 11 16 16 C 1.34778 * 119.99533 * 154.99917 * 15 13 12 17 17 O 1.21273 * 120.00474 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99710 * 179.97438 * 16 15 13 19 19 C 1.50694 * 109.47106 * 179.97438 * 18 16 15 20 20 C 1.39386 * 119.48673 * 90.00428 * 19 18 16 21 21 C 1.36169 * 121.07993 * 179.97438 * 20 19 18 22 22 C 1.40374 * 119.52176 * 359.97438 * 21 20 19 23 23 C 1.40428 * 122.07419 * 180.02562 * 22 21 20 24 24 N 1.31253 * 119.87742 * 179.97438 * 23 22 21 25 25 C 1.32603 * 122.77334 * 359.97438 * 24 23 22 26 26 C 1.36172 * 121.88053 * 0.02562 * 25 24 23 27 27 C 1.40688 * 118.66835 * 359.97438 * 26 25 24 28 28 C 1.36216 * 119.49365 * 269.72766 * 19 18 16 29 29 C 1.46926 * 120.62610 * 208.96279 * 9 7 2 30 30 H 0.96998 * 119.99374 * 185.77013 * 1 2 3 31 31 H 1.09001 * 109.58218 * 246.15690 * 10 9 7 32 32 H 1.08998 * 109.58258 * 6.43678 * 10 9 7 33 33 H 1.09001 * 109.49858 * 174.58638 * 11 10 9 34 34 H 1.09006 * 109.49530 * 294.67981 * 11 10 9 35 35 H 1.09002 * 109.45884 * 58.65430 * 12 11 10 36 36 H 1.09004 * 109.46009 * 178.61596 * 12 11 10 37 37 H 0.97000 * 120.00026 * 335.00171 * 15 13 12 38 38 H 1.09008 * 109.47234 * 300.00277 * 18 16 15 39 39 H 1.09002 * 109.46745 * 60.00031 * 18 16 15 40 40 H 1.07998 * 119.45637 * 359.95415 * 20 19 18 41 41 H 1.08007 * 120.23508 * 180.02562 * 21 20 19 42 42 H 1.07996 * 120.06317 * 359.95654 * 23 22 21 43 43 H 1.08000 * 119.05538 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.66257 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.25748 * 0.02562 * 28 19 18 46 46 H 1.08991 * 109.58972 * 353.42219 * 29 9 7 47 47 H 1.09010 * 109.58337 * 113.84630 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0190 -1.2434 0.3831 9 7 1.4161 -2.3357 -0.4877 10 6 0.3974 -2.2524 -1.5432 11 6 0.8093 -3.1691 -2.6993 12 6 1.0461 -4.5833 -2.1644 13 6 2.1818 -4.5591 -1.1389 14 1 3.0862 -4.1702 -1.6068 15 7 2.4287 -5.9181 -0.6507 16 6 3.6400 -6.2483 -0.1606 17 8 4.5257 -5.4207 -0.1242 18 6 3.8939 -7.6462 0.3422 19 6 5.3149 -7.7535 0.8321 20 6 5.6045 -7.4680 2.1653 21 6 6.8768 -7.5550 2.6425 22 6 7.9148 -7.9388 1.7789 23 6 9.2456 -8.0463 2.2141 24 7 10.1823 -8.4095 1.3695 25 6 9.9331 -8.6875 0.0971 26 6 8.6766 -8.6132 -0.4225 27 6 7.6186 -8.2303 0.4220 28 6 6.2958 -8.1334 -0.0335 29 6 1.7895 -3.6586 0.0310 30 1 -0.4849 -0.8358 0.0845 31 1 -0.5660 -2.5739 -1.1474 32 1 0.3221 -1.2245 -1.8980 33 1 0.0162 -3.1908 -3.4467 34 1 1.7267 -2.7932 -3.1525 35 1 0.1357 -4.9490 -1.6894 36 1 1.3155 -5.2432 -2.9891 37 1 1.7204 -6.5802 -0.6801 38 1 3.2092 -7.8678 1.1609 39 1 3.7344 -8.3581 -0.4676 40 1 4.8066 -7.1726 2.8306 41 1 7.0857 -7.3310 3.6783 42 1 9.4979 -7.8303 3.2417 43 1 10.7501 -8.9811 -0.5453 44 1 8.4961 -8.8435 -1.4621 45 1 6.0569 -8.3557 -1.0630 46 1 2.6341 -3.5588 0.7127 47 1 0.9419 -4.0972 0.5578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007917516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:05 Heat of formation + Delta-G solvation = 5.852872 kcal Electronic energy + Delta-G solvation = -28402.986840 eV Core-core repulsion = 24549.472868 eV Total energy + Delta-G solvation = -3853.513972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84841 -40.98268 -39.32549 -38.30629 -36.12854 -34.31423 -34.04553 -33.54544 -32.30794 -30.91183 -30.51724 -28.65618 -27.11840 -24.99764 -24.43141 -23.98358 -23.40328 -23.03964 -21.47077 -20.95502 -19.43364 -18.78421 -18.20970 -17.96368 -17.63238 -17.04768 -16.41402 -16.15534 -15.94903 -15.86677 -15.48789 -15.29947 -15.26890 -15.17186 -14.87109 -14.67687 -14.41751 -14.31454 -14.08831 -13.65898 -13.59706 -13.07060 -12.95568 -12.86288 -12.72762 -12.63001 -12.41221 -11.98429 -11.96203 -11.89072 -11.85233 -11.69669 -11.25957 -11.18521 -10.94783 -10.62623 -10.49825 -10.12703 -9.90795 -9.02612 -8.96118 -8.29638 -5.47686 -0.59982 -0.11766 0.95628 1.54068 1.60790 1.66343 1.80996 1.91644 2.32452 2.62074 3.09919 3.16332 3.46503 3.54111 3.54607 3.61124 3.77317 3.86234 3.90731 3.99575 4.01248 4.08650 4.14179 4.22382 4.32095 4.35368 4.44569 4.49060 4.58863 4.68220 4.68677 4.72359 4.77400 4.84106 4.90484 4.99780 5.06129 5.10509 5.11532 5.14589 5.23678 5.36442 5.39360 5.50401 5.54046 5.68540 5.78733 5.87812 6.35702 6.61578 6.98414 7.01641 7.33593 7.72362 8.13821 8.93941 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.002429 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.237519 B =11525.895361 C =12559.012915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.068 4.068 3 Si 1.112 2.888 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.360 4.360 8 H 0.034 0.966 9 N -0.616 5.616 10 C 0.150 3.850 11 C -0.126 4.126 12 C -0.103 4.103 13 C 0.143 3.857 14 H 0.050 0.950 15 N -0.708 5.708 16 C 0.507 3.493 17 O -0.585 6.585 18 C -0.095 4.095 19 C -0.050 4.050 20 C -0.118 4.118 21 C -0.091 4.091 22 C -0.132 4.132 23 C 0.140 3.860 24 N -0.517 5.517 25 C 0.059 3.941 26 C -0.158 4.158 27 C -0.044 4.044 28 C -0.113 4.113 29 C 0.148 3.852 30 H 0.256 0.744 31 H 0.015 0.985 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.419 0.581 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.158 0.842 42 H 0.187 0.813 43 H 0.174 0.826 44 H 0.159 0.841 45 H 0.145 0.855 46 H 0.023 0.977 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.657 -24.462 -1.052 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.265 4.265 3 Si 0.936 3.064 4 H -0.209 1.209 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.490 4.490 8 H 0.052 0.948 9 N -0.341 5.341 10 C 0.025 3.975 11 C -0.166 4.166 12 C -0.141 4.141 13 C 0.036 3.964 14 H 0.068 0.932 15 N -0.361 5.361 16 C 0.295 3.705 17 O -0.464 6.464 18 C -0.134 4.134 19 C -0.051 4.051 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.134 4.134 23 C -0.031 4.031 24 N -0.225 5.225 25 C -0.083 4.083 26 C -0.177 4.177 27 C -0.050 4.050 28 C -0.130 4.130 29 C 0.021 3.979 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.256 0.744 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.204 0.796 43 H 0.191 0.809 44 H 0.177 0.823 45 H 0.162 0.838 46 H 0.042 0.958 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 10.031 -22.345 -0.948 24.512 hybrid contribution -0.933 -1.307 0.031 1.606 sum 9.098 -23.653 -0.917 25.359 Atomic orbital electron populations 1.70900 1.07179 1.29498 1.50031 1.27157 0.96689 1.04463 0.98163 0.82904 0.73965 0.72366 0.77180 1.20905 1.20757 1.20597 1.20105 0.96422 0.89986 1.42510 0.94816 1.44257 1.47106 1.01597 1.41130 1.20945 0.89956 0.98301 0.88282 1.21939 1.01426 0.95352 0.97879 1.21611 0.97427 0.97101 0.97995 1.21060 0.98314 0.82065 0.94955 0.93189 1.45880 1.13904 1.12678 1.63641 1.21263 0.81712 0.90870 0.76660 1.90768 1.45668 1.53511 1.56491 1.20833 0.94536 0.92921 1.05135 1.19423 0.95324 0.96497 0.93904 1.21114 0.97958 0.98976 0.95566 1.21253 0.91684 0.97533 1.00576 1.19310 0.96471 1.03048 0.94560 1.23626 0.87056 0.92242 1.00207 1.67454 1.37671 1.12447 1.04915 1.22568 0.96975 0.97122 0.91674 1.22175 0.93063 1.00921 1.01583 1.18484 0.95020 0.97822 0.93631 1.21011 0.91029 1.00735 1.00275 1.21124 0.96381 0.85900 0.94493 0.93398 0.96678 0.93889 0.89206 0.93565 0.90130 0.89043 0.74356 0.84653 0.84193 0.84326 0.82452 0.79632 0.80938 0.82336 0.83760 0.95804 0.95888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 12.45 21.65 0.27 -57.16 16 2 C -0.07 -3.98 4.69 84.86 0.40 -3.58 16 3 Si 1.11 52.97 29.98 68.60 2.06 55.02 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.36 -21.47 9.48 84.03 0.80 -20.67 16 8 H 0.03 2.11 7.94 -2.91 -0.02 2.09 16 9 N -0.62 -32.10 2.84 -699.93 -1.99 -34.09 16 10 C 0.15 6.97 4.70 86.36 0.41 7.38 16 11 C -0.13 -4.36 6.08 30.67 0.19 -4.17 16 12 C -0.10 -2.83 5.36 30.62 0.16 -2.67 16 13 C 0.14 4.83 2.59 44.93 0.12 4.94 16 14 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 15 N -0.71 -16.81 5.08 -442.86 -2.25 -19.06 16 16 C 0.51 13.30 7.79 87.66 0.68 13.99 16 17 O -0.59 -22.74 15.70 -3.01 -0.05 -22.78 16 18 C -0.10 -1.43 5.80 29.10 0.17 -1.26 16 19 C -0.05 -1.01 4.34 -20.06 -0.09 -1.09 16 20 C -0.12 -2.39 9.58 22.06 0.21 -2.18 16 21 C -0.09 -1.76 9.81 22.31 0.22 -1.54 16 22 C -0.13 -2.90 5.74 -21.32 -0.12 -3.03 16 23 C 0.14 2.84 11.05 85.31 0.94 3.78 16 24 N -0.52 -11.74 10.30 -195.53 -2.01 -13.76 16 25 C 0.06 1.16 11.07 84.10 0.93 2.09 16 26 C -0.16 -3.02 9.88 22.39 0.22 -2.80 16 27 C -0.04 -1.00 5.75 -21.28 -0.12 -1.12 16 28 C -0.11 -2.33 9.41 22.28 0.21 -2.12 16 29 C 0.15 6.49 6.06 86.22 0.52 7.01 16 30 H 0.26 15.88 6.72 -92.71 -0.62 15.26 16 31 H 0.02 0.70 7.85 -2.39 -0.02 0.68 16 32 H 0.04 2.29 6.38 -2.39 -0.02 2.27 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.42 6.07 8.60 -92.71 -0.80 5.27 16 38 H 0.14 1.27 8.08 -2.38 -0.02 1.25 16 39 H 0.14 1.11 8.07 -2.39 -0.02 1.09 16 40 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 43 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 46 H 0.02 1.17 7.93 -2.39 -0.02 1.16 16 47 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -83.97 385.06 2.20 -81.76 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.33 Total: 17.10 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.85 Total: -7.05 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -5.98 Total: -124.06 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 52.97 SS G_CDS: 2.06 Total: 55.02 kcal Total: -83.97 2.20 -81.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007917516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.615 kcal (2) G-P(sol) polarization free energy of solvation -83.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds