Wall clock time and date at job start Tue Mar 31 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48504 * 109.47076 * 239.99844 * 3 2 1 5 5 H 1.48498 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47160 * 119.99973 * 3 2 1 7 7 C 1.38804 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00439 * 197.35400 * 7 2 1 9 9 N 1.36941 * 119.99955 * 17.35916 * 7 2 1 10 10 C 1.46922 * 120.63194 * 27.67426 * 9 7 2 11 11 C 1.53189 * 108.77644 * 126.41400 * 10 9 7 12 12 C 1.53035 * 109.31561 * 54.63676 * 11 10 9 13 13 C 1.53045 * 109.53437 * 298.63518 * 12 11 10 14 14 H 1.08997 * 109.49485 * 301.37483 * 13 12 11 15 15 N 1.46505 * 109.49430 * 181.31768 * 13 12 11 16 16 C 1.34779 * 119.99702 * 154.99999 * 15 13 12 17 17 O 1.21275 * 120.00220 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99486 * 180.26887 * 16 15 13 19 19 C 1.50706 * 109.46747 * 179.72218 * 18 16 15 20 20 C 1.36103 * 120.13013 * 264.72626 * 19 18 16 21 21 C 1.39317 * 121.06979 * 179.68215 * 20 19 18 22 22 C 1.36166 * 120.86717 * 0.64470 * 21 20 19 23 23 C 1.40392 * 119.61366 * 359.66567 * 22 21 20 24 24 C 1.40773 * 121.38145 * 179.97438 * 23 22 21 25 25 C 1.36572 * 118.15525 * 179.97438 * 24 23 22 26 26 C 1.39341 * 119.93264 * 0.02562 * 25 24 23 27 27 N 1.31081 * 121.75823 * 0.02562 * 26 25 24 28 28 C 1.33686 * 121.32204 * 359.97438 * 27 26 25 29 29 C 1.46933 * 120.62950 * 207.69632 * 9 7 2 30 30 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58731 * 6.62199 * 10 9 7 32 32 H 1.09004 * 109.70505 * 246.27041 * 10 9 7 33 33 H 1.08997 * 109.49793 * 294.68161 * 11 10 9 34 34 H 1.09007 * 109.49645 * 174.58625 * 11 10 9 35 35 H 1.08995 * 109.46581 * 178.61385 * 12 11 10 36 36 H 1.09000 * 109.45163 * 58.64566 * 12 11 10 37 37 H 0.97002 * 120.00060 * 334.99107 * 15 13 12 38 38 H 1.08992 * 109.48026 * 299.72600 * 18 16 15 39 39 H 1.09001 * 109.47039 * 59.73079 * 18 16 15 40 40 H 1.08010 * 119.46173 * 0.02562 * 20 19 18 41 41 H 1.08003 * 119.56477 * 180.31006 * 21 20 19 42 42 H 1.07995 * 120.19596 * 179.68528 * 22 21 20 43 43 H 1.08002 * 120.92493 * 0.02562 * 24 23 22 44 44 H 1.08001 * 120.03620 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.12112 * 179.97438 * 26 25 24 46 46 H 1.08991 * 109.58305 * 113.80116 * 29 9 7 47 47 H 1.08996 * 109.58466 * 353.37256 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2278 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8183 -4.6905 -1.8586 13 6 2.0740 -4.6104 -0.9875 14 1 2.9080 -4.2414 -1.5845 15 7 2.3954 -5.9425 -0.4693 16 6 3.6624 -6.2425 -0.1211 17 8 4.5365 -5.4098 -0.2371 18 6 3.9941 -7.6147 0.4062 19 6 5.4677 -7.6925 0.7124 20 6 6.3311 -8.2000 -0.2092 21 6 7.6978 -8.2750 0.0507 22 6 8.2066 -7.8538 1.2414 23 6 7.3444 -7.3304 2.2180 24 6 7.8303 -6.8846 3.4618 25 6 6.9331 -6.3868 4.3632 26 6 5.5791 -6.3320 4.0387 27 7 5.1299 -6.7488 2.8800 28 6 5.9547 -7.2470 1.9533 29 6 1.8191 -3.6546 0.1822 30 1 -0.4849 0.8401 -0.0004 31 1 0.0985 -1.3267 -1.6673 32 1 -0.6759 -2.6396 -0.7456 33 1 1.3491 -2.9482 -3.0102 34 1 -0.3804 -3.3680 -3.0660 35 1 0.9886 -5.3890 -2.6779 36 1 -0.0209 -5.0364 -1.2551 37 1 1.6963 -6.6086 -0.3768 38 1 3.4236 -7.8023 1.3157 39 1 3.7389 -8.3635 -0.3437 40 1 5.9513 -8.5451 -1.1596 41 1 8.3617 -8.6775 -0.7001 42 1 9.2672 -7.9216 1.4333 43 1 8.8833 -6.9341 3.6964 44 1 7.2727 -6.0367 5.3268 45 1 4.8811 -5.9362 4.7616 46 1 1.0467 -4.0683 0.8305 47 1 2.7398 -3.5171 0.7491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008113652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:07 Heat of formation + Delta-G solvation = 35.725023 kcal Electronic energy + Delta-G solvation = -29024.125065 eV Core-core repulsion = 25171.906447 eV Total energy + Delta-G solvation = -3852.218618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.02625 -39.43468 -37.50468 -36.98653 -34.28209 -34.05131 -32.37341 -31.43289 -30.63999 -30.39617 -28.97956 -27.14232 -25.21999 -24.29906 -23.69270 -22.42471 -22.01584 -21.12287 -19.93755 -19.20298 -18.39178 -17.08381 -16.94180 -16.71894 -16.65912 -15.51517 -15.12137 -14.70861 -14.67571 -14.40756 -14.22965 -14.08326 -13.82031 -13.43204 -13.39165 -13.15872 -13.04667 -13.00787 -12.35334 -12.32145 -11.97709 -11.84882 -11.78742 -11.64659 -11.35300 -11.02051 -10.81598 -10.73256 -10.57557 -10.21684 -10.18921 -9.85424 -9.83183 -9.56231 -9.53792 -9.36909 -8.85456 -8.70423 -8.32600 -8.26482 -6.60762 -5.72694 -3.14183 0.28150 0.74616 1.87650 2.82073 3.02543 3.44725 3.48822 3.50923 3.55955 4.04660 4.23307 4.37343 4.57507 4.60304 4.64010 4.77559 4.91205 5.01767 5.11683 5.19837 5.24377 5.31512 5.37788 5.45762 5.47909 5.60865 5.66746 5.70365 5.79702 5.87344 5.90152 5.95654 6.15900 6.24066 6.26082 6.30558 6.31794 6.41567 6.59232 6.67081 6.74842 6.77718 6.79756 6.92990 7.10818 7.41445 7.69980 7.86914 7.88532 7.90027 8.51103 8.63677 9.28476 9.90993 10.46860 11.36077 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.003041 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.965773 B = 9206.581580 C =10491.816253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.128 3.872 14 H 0.083 0.917 15 N -0.725 5.725 16 C 0.519 3.481 17 O -0.531 6.531 18 C -0.098 4.098 19 C -0.032 4.032 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.102 4.102 23 C -0.102 4.102 24 C -0.061 4.061 25 C -0.176 4.176 26 C 0.131 3.869 27 N -0.465 5.465 28 C 0.142 3.858 29 C 0.144 3.856 30 H 0.253 0.747 31 H 0.089 0.911 32 H 0.018 0.982 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.394 0.606 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.159 0.841 46 H 0.017 0.983 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.270 -21.227 2.746 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.152 4.152 13 C 0.022 3.978 14 H 0.102 0.898 15 N -0.376 5.376 16 C 0.304 3.696 17 O -0.406 6.406 18 C -0.138 4.138 19 C -0.033 4.033 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.104 4.104 24 C -0.087 4.087 25 C -0.196 4.196 26 C -0.041 4.041 27 N -0.172 5.172 28 C 0.021 3.979 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.227 0.773 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.176 0.824 46 H 0.035 0.965 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.897 -20.435 2.376 23.281 hybrid contribution 0.977 0.598 0.328 1.192 sum 11.874 -19.837 2.704 23.277 Atomic orbital electron populations 1.70036 1.05203 1.25508 1.54233 1.24999 0.95281 0.98310 1.01027 0.86363 0.78912 0.83279 0.78230 1.21012 1.21630 1.20883 1.19186 0.92776 0.84762 1.41107 0.91712 1.43999 1.35587 1.01113 1.50382 1.20829 0.88585 0.98526 0.87893 1.22179 1.00345 0.95304 1.00115 1.21671 0.96851 0.98465 0.98230 1.21687 0.97561 0.81527 0.97006 0.89849 1.46109 1.09159 1.15770 1.66563 1.20257 0.82666 0.89104 0.77568 1.90734 1.47009 1.49992 1.52891 1.20574 0.93627 0.96101 1.03480 1.18951 0.94933 0.97424 0.92013 1.20752 0.93181 0.99078 0.98627 1.20844 0.95221 0.99752 0.97114 1.20931 0.99109 0.98593 0.93432 1.18804 0.94329 1.01549 0.95747 1.21428 1.00144 0.94979 0.92107 1.21891 0.94789 1.01754 1.01142 1.22994 0.94076 0.93797 0.93261 1.68000 1.38340 1.09385 1.01471 1.18625 0.89031 0.96548 0.93736 1.21167 0.97834 0.86703 0.92657 0.93668 0.89314 0.96353 0.92501 0.92783 0.93186 0.92279 0.77341 0.87172 0.88379 0.85412 0.85522 0.85433 0.84592 0.84613 0.82387 0.96549 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.88 11.19 55.49 0.62 -26.26 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 22.62 29.59 -169.99 -5.03 17.59 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -7.25 9.59 -15.06 -0.14 -7.39 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 9 N -0.59 -15.53 3.00 -172.32 -0.52 -16.05 16 10 C 0.17 4.07 5.31 -3.71 -0.02 4.05 16 11 C -0.14 -2.69 6.08 -26.62 -0.16 -2.85 16 12 C -0.11 -1.90 5.35 -26.69 -0.14 -2.04 16 13 C 0.13 2.41 2.61 -67.81 -0.18 2.23 16 14 H 0.08 1.82 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -10.96 5.08 -53.69 -0.27 -11.23 16 16 C 0.52 8.44 7.79 -10.98 -0.09 8.36 16 17 O -0.53 -11.25 15.70 5.56 0.09 -11.16 16 18 C -0.10 -1.18 5.56 -29.03 -0.16 -1.34 16 19 C -0.03 -0.43 4.38 -104.51 -0.46 -0.89 16 20 C -0.10 -1.08 9.56 -39.95 -0.38 -1.46 16 21 C -0.11 -1.10 9.95 -39.93 -0.40 -1.50 16 22 C -0.10 -1.04 9.78 -39.52 -0.39 -1.42 16 23 C -0.10 -1.27 5.74 -106.80 -0.61 -1.88 16 24 C -0.06 -0.61 9.90 -39.23 -0.39 -1.00 16 25 C -0.18 -1.73 10.03 -39.77 -0.40 -2.13 16 26 C 0.13 1.58 11.15 -17.46 -0.19 1.38 16 27 N -0.46 -6.89 9.51 -10.97 -0.10 -7.00 16 28 C 0.14 2.06 6.58 -84.86 -0.56 1.50 16 29 C 0.14 3.32 6.09 -3.71 -0.02 3.29 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.39 4.53 8.60 -40.82 -0.35 4.18 16 38 H 0.11 1.26 7.71 -51.93 -0.40 0.86 16 39 H 0.10 0.83 8.03 -51.93 -0.42 0.42 16 40 H 0.13 1.12 8.04 -52.48 -0.42 0.70 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 1.43 7.93 -51.93 -0.41 1.02 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -36.30 385.01 -11.10 -47.40 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.91 Total: 4.02 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.78 Total: -3.11 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.27 Total: -60.54 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.30 -11.10 -47.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008113652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.128 kcal (2) G-P(sol) polarization free energy of solvation -36.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds