Wall clock time and date at job start Tue Mar 31 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48504 * 109.47076 * 239.99844 * 3 2 1 5 5 H 1.48498 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47160 * 119.99973 * 3 2 1 7 7 C 1.38804 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00439 * 197.35400 * 7 2 1 9 9 N 1.36941 * 119.99955 * 17.35916 * 7 2 1 10 10 C 1.46922 * 120.63194 * 27.67426 * 9 7 2 11 11 C 1.53189 * 108.77644 * 126.41400 * 10 9 7 12 12 C 1.53035 * 109.31561 * 54.63676 * 11 10 9 13 13 C 1.53045 * 109.53437 * 298.63518 * 12 11 10 14 14 H 1.08997 * 109.49485 * 301.37483 * 13 12 11 15 15 N 1.46505 * 109.49430 * 181.31768 * 13 12 11 16 16 C 1.34779 * 119.99702 * 154.99999 * 15 13 12 17 17 O 1.21275 * 120.00220 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99486 * 180.26887 * 16 15 13 19 19 C 1.50706 * 109.46747 * 179.72218 * 18 16 15 20 20 C 1.36103 * 120.13013 * 264.72626 * 19 18 16 21 21 C 1.39317 * 121.06979 * 179.68215 * 20 19 18 22 22 C 1.36166 * 120.86717 * 0.64470 * 21 20 19 23 23 C 1.40392 * 119.61366 * 359.66567 * 22 21 20 24 24 C 1.40773 * 121.38145 * 179.97438 * 23 22 21 25 25 C 1.36572 * 118.15525 * 179.97438 * 24 23 22 26 26 C 1.39341 * 119.93264 * 0.02562 * 25 24 23 27 27 N 1.31081 * 121.75823 * 0.02562 * 26 25 24 28 28 C 1.33686 * 121.32204 * 359.97438 * 27 26 25 29 29 C 1.46933 * 120.62950 * 207.69632 * 9 7 2 30 30 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58731 * 6.62199 * 10 9 7 32 32 H 1.09004 * 109.70505 * 246.27041 * 10 9 7 33 33 H 1.08997 * 109.49793 * 294.68161 * 11 10 9 34 34 H 1.09007 * 109.49645 * 174.58625 * 11 10 9 35 35 H 1.08995 * 109.46581 * 178.61385 * 12 11 10 36 36 H 1.09000 * 109.45163 * 58.64566 * 12 11 10 37 37 H 0.97002 * 120.00060 * 334.99107 * 15 13 12 38 38 H 1.08992 * 109.48026 * 299.72600 * 18 16 15 39 39 H 1.09001 * 109.47039 * 59.73079 * 18 16 15 40 40 H 1.08010 * 119.46173 * 0.02562 * 20 19 18 41 41 H 1.08003 * 119.56477 * 180.31006 * 21 20 19 42 42 H 1.07995 * 120.19596 * 179.68528 * 22 21 20 43 43 H 1.08002 * 120.92493 * 0.02562 * 24 23 22 44 44 H 1.08001 * 120.03620 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.12112 * 179.97438 * 26 25 24 46 46 H 1.08991 * 109.58305 * 113.80116 * 29 9 7 47 47 H 1.08996 * 109.58466 * 353.37256 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2278 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8183 -4.6905 -1.8586 13 6 2.0740 -4.6104 -0.9875 14 1 2.9080 -4.2414 -1.5845 15 7 2.3954 -5.9425 -0.4693 16 6 3.6624 -6.2425 -0.1211 17 8 4.5365 -5.4098 -0.2371 18 6 3.9941 -7.6147 0.4062 19 6 5.4677 -7.6925 0.7124 20 6 6.3311 -8.2000 -0.2092 21 6 7.6978 -8.2750 0.0507 22 6 8.2066 -7.8538 1.2414 23 6 7.3444 -7.3304 2.2180 24 6 7.8303 -6.8846 3.4618 25 6 6.9331 -6.3868 4.3632 26 6 5.5791 -6.3320 4.0387 27 7 5.1299 -6.7488 2.8800 28 6 5.9547 -7.2470 1.9533 29 6 1.8191 -3.6546 0.1822 30 1 -0.4849 0.8401 -0.0004 31 1 0.0985 -1.3267 -1.6673 32 1 -0.6759 -2.6396 -0.7456 33 1 1.3491 -2.9482 -3.0102 34 1 -0.3804 -3.3680 -3.0660 35 1 0.9886 -5.3890 -2.6779 36 1 -0.0209 -5.0364 -1.2551 37 1 1.6963 -6.6086 -0.3768 38 1 3.4236 -7.8023 1.3157 39 1 3.7389 -8.3635 -0.3437 40 1 5.9513 -8.5451 -1.1596 41 1 8.3617 -8.6775 -0.7001 42 1 9.2672 -7.9216 1.4333 43 1 8.8833 -6.9341 3.6964 44 1 7.2727 -6.0367 5.3268 45 1 4.8811 -5.9362 4.7616 46 1 1.0467 -4.0683 0.8305 47 1 2.7398 -3.5171 0.7491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008113652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:06 Heat of formation + Delta-G solvation = 12.045797 kcal Electronic energy + Delta-G solvation = -29025.151873 eV Core-core repulsion = 25171.906447 eV Total energy + Delta-G solvation = -3853.245426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88522 -40.78245 -39.01534 -37.98592 -35.91600 -35.01942 -34.13832 -32.38145 -32.35710 -31.44220 -30.47658 -28.24292 -27.28051 -25.13325 -24.51041 -23.95881 -23.81877 -22.26198 -21.32542 -20.78636 -19.17534 -18.74774 -18.03552 -17.88374 -17.73414 -17.11619 -16.60359 -16.26777 -15.79099 -15.58357 -15.36419 -15.30404 -15.10749 -14.89608 -14.77180 -14.56272 -14.21718 -14.04735 -13.90916 -13.79954 -13.41600 -13.06604 -12.92716 -12.76136 -12.64666 -12.57240 -12.51397 -12.16869 -12.12055 -11.99626 -11.77005 -11.58299 -11.43718 -11.32566 -10.79891 -10.63474 -10.40240 -10.07428 -9.68231 -9.09813 -8.72179 -7.93579 -5.39235 -0.52134 -0.08510 1.03927 1.40898 1.43482 1.51277 1.75017 2.00487 2.30229 2.49583 3.16390 3.19848 3.41388 3.57057 3.69559 3.82409 3.85208 3.90504 4.05419 4.07914 4.10788 4.17704 4.26013 4.30888 4.40811 4.46707 4.48553 4.55762 4.58627 4.65296 4.79138 4.90146 4.90943 5.00583 5.09033 5.11506 5.13700 5.15995 5.20293 5.26884 5.46225 5.48011 5.48805 5.59135 5.59593 5.65056 5.74387 5.98361 6.33556 6.67899 7.00447 7.09760 7.39860 7.79318 8.29403 9.11877 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.003041 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.965773 B = 9206.581580 C =10491.816253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.041 4.041 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.272 4.272 8 H 0.047 0.953 9 N -0.607 5.607 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.103 4.103 13 C 0.144 3.856 14 H 0.052 0.948 15 N -0.711 5.711 16 C 0.516 3.484 17 O -0.585 6.585 18 C -0.084 4.084 19 C -0.068 4.068 20 C -0.096 4.096 21 C -0.119 4.119 22 C -0.102 4.102 23 C -0.128 4.128 24 C -0.061 4.061 25 C -0.179 4.179 26 C 0.112 3.888 27 N -0.505 5.505 28 C 0.108 3.892 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.055 0.945 32 H 0.005 0.995 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.113 0.887 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.171 0.829 44 H 0.169 0.831 45 H 0.171 0.829 46 H 0.018 0.982 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.330 -23.271 1.868 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.237 4.237 3 Si 0.793 3.207 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.402 4.402 8 H 0.065 0.935 9 N -0.331 5.331 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.141 4.141 13 C 0.037 3.963 14 H 0.070 0.930 15 N -0.363 5.363 16 C 0.304 3.696 17 O -0.465 6.465 18 C -0.124 4.124 19 C -0.069 4.069 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.086 4.086 25 C -0.199 4.199 26 C -0.060 4.060 27 N -0.214 5.214 28 C -0.013 4.013 29 C 0.022 3.978 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.253 0.747 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.189 0.811 44 H 0.186 0.814 45 H 0.188 0.812 46 H 0.036 0.964 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 11.928 -22.543 1.499 25.548 hybrid contribution 0.699 1.227 0.680 1.567 sum 12.627 -21.317 2.180 24.872 Atomic orbital electron populations 1.70162 1.06326 1.26173 1.54651 1.25708 0.96150 1.01144 1.00720 0.85384 0.77793 0.79319 0.78225 1.20534 1.20785 1.20545 1.19325 0.92436 0.86571 1.41916 0.93491 1.44227 1.36092 1.01452 1.51361 1.20731 0.87435 0.98264 0.88970 1.22020 1.01365 0.95340 0.98211 1.21604 0.95753 0.97628 0.99075 1.21174 0.97784 0.82296 0.94999 0.92964 1.45896 1.09817 1.14682 1.65920 1.21078 0.82042 0.90269 0.76213 1.90707 1.48668 1.52015 1.55070 1.20545 0.93569 0.93878 1.04379 1.19222 0.95772 0.99354 0.92601 1.21148 0.93774 0.97817 0.98866 1.21275 0.95228 0.99334 0.97829 1.21356 1.00417 0.97314 0.92961 1.19218 0.94063 1.02340 0.97400 1.21893 1.01883 0.93697 0.91165 1.22212 0.93780 1.01331 1.02551 1.23441 0.95834 0.93702 0.93037 1.67944 1.39659 1.11077 1.02673 1.19046 0.90320 0.97524 0.94393 1.21164 0.95819 0.86662 0.94173 0.93714 0.92642 0.97655 0.93568 0.89492 0.89206 0.90565 0.74726 0.86938 0.84281 0.83185 0.82337 0.82300 0.81114 0.81394 0.81150 0.96422 0.96193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 11.19 21.65 0.24 -56.26 16 2 C -0.04 -2.44 4.91 84.86 0.42 -2.02 16 3 Si 0.97 47.59 29.59 68.60 2.03 49.62 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.27 -16.60 9.59 84.03 0.81 -15.79 16 8 H 0.05 2.95 7.89 -2.91 -0.02 2.93 16 9 N -0.61 -33.38 3.00 -699.11 -2.09 -35.47 16 10 C 0.17 8.49 5.31 86.36 0.46 8.95 16 11 C -0.13 -4.83 6.08 30.67 0.19 -4.65 16 12 C -0.10 -3.17 5.35 30.62 0.16 -3.01 16 13 C 0.14 5.44 2.61 45.07 0.12 5.56 16 14 H 0.05 2.33 7.58 -2.39 -0.02 2.32 16 15 N -0.71 -20.88 5.08 -442.16 -2.25 -23.12 16 16 C 0.52 16.88 7.79 87.66 0.68 17.57 16 17 O -0.59 -25.86 15.70 -3.01 -0.05 -25.91 16 18 C -0.08 -1.97 5.56 29.10 0.16 -1.81 16 19 C -0.07 -1.81 4.38 -19.79 -0.09 -1.90 16 20 C -0.10 -2.02 9.56 22.03 0.21 -1.80 16 21 C -0.12 -2.09 9.95 22.05 0.22 -1.87 16 22 C -0.10 -1.89 9.78 22.31 0.22 -1.67 16 23 C -0.13 -3.11 5.74 -21.27 -0.12 -3.23 16 24 C -0.06 -1.15 9.90 22.50 0.22 -0.92 16 25 C -0.18 -3.41 10.03 22.15 0.22 -3.19 16 26 C 0.11 2.79 11.15 85.07 0.95 3.74 16 27 N -0.51 -15.73 9.51 -188.63 -1.79 -17.52 16 28 C 0.11 3.21 6.58 40.29 0.27 3.47 16 29 C 0.15 7.14 6.09 86.36 0.53 7.67 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 31 H 0.06 3.10 6.04 -2.38 -0.01 3.09 16 32 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.42 8.57 8.60 -92.71 -0.80 7.77 16 38 H 0.11 2.56 7.71 -2.39 -0.02 2.54 16 39 H 0.14 1.98 8.03 -2.39 -0.02 1.97 16 40 H 0.15 2.27 8.04 -2.91 -0.02 2.25 16 41 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 43 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.02 1.06 7.93 -2.39 -0.02 1.04 16 Total: -1.00 -85.56 385.01 1.89 -83.66 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.18 Total: 19.92 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.62 Total: 5.09 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -5.89 Total: -132.39 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -85.56 1.89 -83.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008113652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.710 kcal (2) G-P(sol) polarization free energy of solvation -85.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds