Wall clock time and date at job start Tue Mar 31 2020 22:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99983 * 2 1 4 4 H 1.48491 * 109.47228 * 269.99839 * 3 2 1 5 5 H 1.48499 * 109.47283 * 30.00310 * 3 2 1 6 6 H 1.48501 * 109.47105 * 149.99882 * 3 2 1 7 7 C 1.38813 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00333 * 197.36487 * 7 2 1 9 9 N 1.36940 * 119.99526 * 17.36249 * 7 2 1 10 10 C 1.46927 * 120.63148 * 207.66442 * 9 7 2 11 11 C 1.53187 * 108.77594 * 233.63309 * 10 9 7 12 12 C 1.53040 * 109.31333 * 305.36432 * 11 10 9 13 13 C 1.53038 * 109.53999 * 61.36507 * 12 11 10 14 14 H 1.08999 * 109.52476 * 58.60189 * 13 12 11 15 15 N 1.46501 * 109.50054 * 178.68345 * 13 12 11 16 16 C 1.34766 * 120.00095 * 204.83874 * 15 13 12 17 17 O 1.21285 * 120.00268 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00241 * 180.02562 * 16 15 13 19 19 C 1.50693 * 109.47492 * 180.02562 * 18 16 15 20 20 C 1.36119 * 120.12532 * 264.72533 * 19 18 16 21 21 C 1.39312 * 121.06512 * 179.75853 * 20 19 18 22 22 C 1.36169 * 120.86932 * 0.50027 * 21 20 19 23 23 C 1.40385 * 119.61742 * 359.76299 * 22 21 20 24 24 C 1.40776 * 121.38837 * 179.97438 * 23 22 21 25 25 C 1.36581 * 118.14957 * 180.02562 * 24 23 22 26 26 C 1.39334 * 119.94302 * 0.02562 * 25 24 23 27 27 N 1.31085 * 121.74869 * 0.02562 * 26 25 24 28 28 C 1.33689 * 121.31956 * 359.96216 * 27 26 25 29 29 C 1.46924 * 120.62999 * 27.68933 * 9 7 2 30 30 H 0.97000 * 119.99382 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58445 * 353.41927 * 10 9 7 32 32 H 1.08994 * 109.58743 * 113.84113 * 10 9 7 33 33 H 1.09002 * 109.50095 * 65.31837 * 11 10 9 34 34 H 1.08999 * 109.49830 * 185.38007 * 11 10 9 35 35 H 1.09001 * 109.45934 * 301.34743 * 12 11 10 36 36 H 1.08997 * 109.45853 * 181.38836 * 12 11 10 37 37 H 0.97000 * 119.99727 * 24.84262 * 15 13 12 38 38 H 1.09000 * 109.47126 * 300.00105 * 18 16 15 39 39 H 1.09005 * 109.47038 * 59.99736 * 18 16 15 40 40 H 1.08004 * 119.46293 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.56643 * 180.23667 * 21 20 19 42 42 H 1.08008 * 120.19055 * 179.79042 * 22 21 20 43 43 H 1.08000 * 120.92834 * 0.02562 * 24 23 22 44 44 H 1.08005 * 120.02816 * 180.02562 * 25 24 23 45 45 H 1.07997 * 119.12535 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.58874 * 6.57875 * 29 9 7 47 47 H 1.09004 * 109.58679 * 246.15672 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2797 9 7 1.3724 -2.3612 -0.3529 10 6 1.8196 -3.6547 0.1815 11 6 2.0753 -4.6098 -0.9886 12 6 0.8198 -4.6899 -1.8601 13 6 0.5016 -3.3048 -2.4279 14 1 1.3498 -2.9465 -3.0110 15 7 -0.6820 -3.3887 -3.2872 16 6 -0.8699 -2.4813 -4.2657 17 8 -0.0589 -1.5956 -4.4354 18 6 -2.0877 -2.5672 -5.1493 19 6 -2.0592 -1.4449 -6.1546 20 6 -2.7300 -0.2871 -5.9050 21 6 -2.7129 0.7648 -6.8183 22 6 -2.0314 0.6595 -7.9925 23 6 -1.3326 -0.5222 -8.2856 24 6 -0.6164 -0.6714 -9.4883 25 6 0.0395 -1.8495 -9.7058 26 6 -0.0134 -2.8618 -8.7497 27 7 -0.6822 -2.7199 -7.6313 28 6 -1.3456 -1.5922 -7.3565 29 6 0.2281 -2.3349 -1.2740 30 1 -0.4849 0.8401 -0.0004 31 1 2.7401 -3.5171 0.7487 32 1 1.0472 -4.0691 0.8294 33 1 2.9091 -4.2395 -1.5850 34 1 2.3153 -5.6008 -0.6035 35 1 -0.0193 -5.0367 -1.2571 36 1 0.9907 -5.3879 -2.6797 37 1 -1.3304 -4.0973 -3.1517 38 1 -2.0901 -3.5233 -5.6728 39 1 -2.9865 -2.4853 -4.5381 40 1 -3.2816 -0.1809 -4.9826 41 1 -3.2506 1.6742 -6.5939 42 1 -2.0283 1.4807 -8.6942 43 1 -0.5863 0.1236 -10.2187 44 1 0.5987 -1.9964 -10.6180 45 1 0.5097 -3.7881 -8.9355 46 1 0.0985 -1.3266 -1.6672 47 1 -0.6741 -2.6417 -0.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008113655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:10 Heat of formation + Delta-G solvation = 11.590279 kcal Electronic energy + Delta-G solvation = -29312.660866 eV Core-core repulsion = 25459.395687 eV Total energy + Delta-G solvation = -3853.265179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89239 -40.74688 -38.98721 -37.99559 -35.78072 -35.02912 -34.42826 -32.44774 -31.89129 -31.45545 -30.60546 -28.29250 -27.25094 -25.13250 -24.52178 -24.01980 -23.73243 -22.22877 -21.31642 -20.74599 -19.18770 -18.76812 -18.05929 -17.88156 -17.74634 -17.13672 -16.61914 -16.13373 -15.79626 -15.56964 -15.36525 -15.28527 -15.07165 -15.00346 -14.68079 -14.56019 -14.15733 -14.02856 -13.91890 -13.82462 -13.48304 -12.97382 -12.94676 -12.73452 -12.66780 -12.55484 -12.47131 -12.25646 -12.14256 -12.05915 -11.71127 -11.60610 -11.43849 -11.27543 -10.76989 -10.58517 -10.40614 -10.03812 -9.69668 -9.11646 -8.71094 -7.91311 -5.36838 -0.53153 -0.09677 1.02826 1.36880 1.42920 1.48374 1.78554 1.99089 2.34099 2.48097 3.15166 3.25038 3.40258 3.54502 3.73541 3.81224 3.88538 3.94117 4.05629 4.07787 4.13259 4.15739 4.27361 4.29564 4.39379 4.45728 4.48571 4.56545 4.61650 4.63408 4.80786 4.87527 4.91917 5.07031 5.07525 5.13946 5.15338 5.18658 5.23230 5.33277 5.45214 5.47589 5.49811 5.52638 5.60019 5.63311 5.78711 5.96029 6.34622 6.70635 7.00063 7.09955 7.43718 7.83310 8.32205 9.13378 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003468 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.902337 B = 8070.971722 C = 9318.108464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.048 4.048 3 Si 0.959 3.041 4 H -0.298 1.298 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.133 3.867 14 H 0.041 0.959 15 N -0.711 5.711 16 C 0.514 3.486 17 O -0.586 6.586 18 C -0.084 4.084 19 C -0.066 4.066 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.101 4.101 23 C -0.128 4.128 24 C -0.061 4.061 25 C -0.176 4.176 26 C 0.116 3.884 27 N -0.503 5.503 28 C 0.112 3.888 29 C 0.182 3.818 30 H 0.247 0.753 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.413 0.587 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.171 0.829 44 H 0.173 0.827 45 H 0.181 0.819 46 H 0.041 0.959 47 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 -8.036 -19.947 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.244 4.244 3 Si 0.787 3.213 4 H -0.226 1.226 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.335 5.335 10 C 0.011 3.989 11 C -0.161 4.161 12 C -0.144 4.144 13 C 0.027 3.973 14 H 0.059 0.941 15 N -0.363 5.363 16 C 0.302 3.698 17 O -0.466 6.466 18 C -0.123 4.123 19 C -0.067 4.067 20 C -0.125 4.125 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.087 4.087 25 C -0.196 4.196 26 C -0.056 4.056 27 N -0.211 5.211 28 C -0.009 4.009 29 C 0.055 3.945 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.250 0.750 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.154 0.846 41 H 0.170 0.830 42 H 0.179 0.821 43 H 0.188 0.812 44 H 0.191 0.809 45 H 0.198 0.802 46 H 0.060 0.940 47 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -6.267 -7.927 -19.313 21.797 hybrid contribution 0.151 1.608 -0.099 1.618 sum -6.116 -6.319 -19.412 21.311 Atomic orbital electron populations 1.70167 1.06599 1.25565 1.55070 1.25750 0.96060 1.01424 1.01142 0.85388 0.78757 0.80094 0.77044 1.22562 1.21380 1.18481 1.19514 0.93050 0.86349 1.40810 0.91517 1.44263 1.36064 1.02702 1.50444 1.21180 0.97585 0.85570 0.94602 1.21905 0.96939 1.00192 0.97075 1.21632 0.99116 0.93909 0.99723 1.21428 0.87076 0.97881 0.90925 0.94108 1.45865 1.25969 1.31538 1.32934 1.21043 0.87659 0.80650 0.80443 1.90712 1.47799 1.36311 1.71740 1.20529 0.96445 0.99972 0.95376 1.19195 0.97547 0.96501 0.93457 1.21112 0.98897 0.92525 0.99973 1.21219 0.99695 0.99236 0.93854 1.21352 0.95848 0.96612 0.98111 1.19199 1.01134 0.95906 0.96719 1.21890 0.93016 0.98779 0.94978 1.22257 1.01208 0.94000 1.02105 1.23551 0.93658 1.00198 0.88182 1.67938 1.08669 1.23780 1.20756 1.18890 0.96556 0.90689 0.94718 1.20767 0.88026 0.97435 0.88318 0.94365 0.92665 0.95812 0.93395 0.88320 0.90471 0.89874 0.74992 0.85935 0.85641 0.84628 0.82951 0.82102 0.81160 0.80933 0.80164 0.94035 0.98075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.82 11.19 21.65 0.24 -58.57 16 2 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 3 Si 0.96 48.87 29.59 68.60 2.03 50.90 16 4 H -0.30 -15.62 7.11 99.48 0.71 -14.92 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.27 -15.83 9.59 84.03 0.81 -15.03 16 8 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 9 N -0.61 -32.73 2.99 -699.11 -2.09 -34.82 16 10 C 0.14 5.69 6.52 86.36 0.56 6.25 16 11 C -0.12 -4.00 6.08 30.67 0.19 -3.81 16 12 C -0.11 -3.31 5.35 30.62 0.16 -3.15 16 13 C 0.13 5.53 2.60 45.07 0.12 5.65 16 14 H 0.04 2.02 7.58 -2.39 -0.02 2.00 16 15 N -0.71 -24.51 5.08 -442.17 -2.25 -26.76 16 16 C 0.51 19.80 7.79 87.66 0.68 20.49 16 17 O -0.59 -29.69 15.70 -3.04 -0.05 -29.74 16 18 C -0.08 -2.39 5.56 29.10 0.16 -2.22 16 19 C -0.07 -2.06 4.38 -19.79 -0.09 -2.15 16 20 C -0.11 -2.98 9.57 22.03 0.21 -2.77 16 21 C -0.12 -2.90 9.95 22.05 0.22 -2.68 16 22 C -0.10 -2.24 9.77 22.31 0.22 -2.02 16 23 C -0.13 -3.32 5.74 -21.28 -0.12 -3.45 16 24 C -0.06 -1.15 9.90 22.50 0.22 -0.93 16 25 C -0.18 -3.04 10.03 22.15 0.22 -2.81 16 26 C 0.12 2.59 11.15 85.07 0.95 3.54 16 27 N -0.50 -15.17 9.51 -188.64 -1.79 -16.96 16 28 C 0.11 3.52 6.58 40.28 0.27 3.79 16 29 C 0.18 9.49 4.89 86.36 0.42 9.91 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 37 H 0.41 10.44 8.60 -92.71 -0.80 9.64 16 38 H 0.12 3.04 7.71 -2.39 -0.02 3.02 16 39 H 0.13 2.79 8.04 -2.38 -0.02 2.77 16 40 H 0.14 3.46 8.04 -2.91 -0.02 3.43 16 41 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 42 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 44 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.18 2.79 8.06 -2.91 -0.02 2.76 16 46 H 0.04 2.61 6.03 -2.39 -0.01 2.59 16 47 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 Total: -1.00 -87.50 385.01 1.89 -85.61 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.18 Total: 24.22 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 5.62 Total: 6.13 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -5.89 Total: -137.12 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.05 Total: -29.74 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Total: -87.50 1.89 -85.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008113655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.200 kcal (2) G-P(sol) polarization free energy of solvation -87.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds