Wall clock time and date at job start Tue Mar 31 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99846 * 2 1 4 4 H 1.48498 * 109.47059 * 92.96247 * 3 2 1 5 5 H 1.48503 * 109.47024 * 212.96488 * 3 2 1 6 6 H 1.48496 * 109.47060 * 332.96006 * 3 2 1 7 7 C 1.38807 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00373 * 19.01879 * 7 2 1 9 9 N 1.36940 * 120.00375 * 199.02082 * 7 2 1 10 10 C 1.46839 * 120.38082 * 210.43373 * 9 7 2 11 11 C 1.52875 * 109.07233 * 236.84841 * 10 9 7 12 12 C 1.53181 * 108.82510 * 308.91731 * 11 10 9 13 13 C 1.52844 * 117.65478 * 269.84625 * 12 11 10 14 14 C 1.52819 * 117.71305 * 200.99040 * 12 11 10 15 15 H 1.08994 * 117.49988 * 215.09830 * 14 12 11 16 16 N 1.46502 * 117.50227 * 0.13362 * 14 12 11 17 17 C 1.34771 * 120.00238 * 205.00330 * 16 14 12 18 18 O 1.21578 * 120.00070 * 359.97438 * 17 16 14 19 19 C 1.47656 * 120.00363 * 179.97438 * 17 16 14 20 20 C 1.40211 * 119.96919 * 359.72706 * 19 17 16 21 21 C 1.36322 * 120.66575 * 179.71122 * 20 19 17 22 22 C 1.39366 * 120.23694 * 0.56084 * 21 20 19 23 23 N 1.37396 * 133.25090 * 179.71923 * 22 21 20 24 24 H 0.97000 * 125.00478 * 359.97438 * 23 22 21 25 25 C 1.36854 * 109.98451 * 180.02562 * 23 22 21 26 26 C 1.34195 * 109.96117 * 359.97438 * 25 23 22 27 27 C 1.40884 * 119.63838 * 359.72127 * 22 21 20 28 28 C 1.39148 * 119.97757 * 179.97438 * 19 17 16 29 29 C 1.53180 * 115.07803 * 55.31602 * 12 11 10 30 30 C 1.46844 * 120.37606 * 30.69922 * 9 7 2 31 31 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58204 * 356.68377 * 10 9 7 33 33 H 1.09000 * 109.58060 * 117.09112 * 10 9 7 34 34 H 1.08998 * 109.66431 * 189.04710 * 11 10 9 35 35 H 1.08996 * 109.44712 * 68.65348 * 11 10 9 36 36 H 1.09005 * 117.50506 * 359.75868 * 13 12 11 37 37 H 1.09004 * 117.50864 * 144.78428 * 13 12 11 38 38 H 0.97005 * 120.00024 * 24.99898 * 16 14 12 39 39 H 1.07998 * 119.66608 * 359.97309 * 20 19 17 40 40 H 1.07997 * 119.87832 * 180.25496 * 21 20 19 41 41 H 1.07999 * 125.02252 * 180.02562 * 25 23 22 42 42 H 1.07998 * 126.54454 * 179.97438 * 26 25 23 43 43 H 1.08005 * 120.29998 * 0.02562 * 28 19 17 44 44 H 1.08998 * 109.59110 * 184.76466 * 29 12 11 45 45 H 1.08998 * 109.58959 * 64.33257 * 29 12 11 46 46 H 1.08999 * 109.57594 * 242.91248 * 30 9 7 47 47 H 1.08997 * 109.58075 * 3.30970 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5603 2.0103 1.3982 5 1 3.5150 1.4591 -0.7618 6 1 1.4177 2.6699 -0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5146 -2.1118 -0.3057 9 7 3.3236 -1.2347 0.3859 10 6 4.2427 -2.2248 -0.1895 11 6 4.8639 -3.0458 0.9405 12 6 5.4357 -2.0882 1.9906 13 6 6.8891 -1.6438 1.8289 14 6 6.5076 -2.6285 2.9364 15 1 6.5075 -2.2579 3.9614 16 7 6.9152 -4.0258 2.7693 17 6 7.4352 -4.7051 3.8107 18 8 7.5666 -4.1583 4.8886 19 6 7.8456 -6.1135 3.6425 20 6 7.6885 -6.7453 2.4007 21 6 8.0679 -8.0432 2.2280 22 6 8.6079 -8.7640 3.2916 23 7 9.0645 -10.0535 3.4194 24 1 9.0749 -10.7132 2.7083 25 6 9.5015 -10.2704 4.6981 26 6 9.3487 -9.1558 5.4296 27 6 8.7654 -8.1422 4.5459 28 6 8.3829 -6.8143 4.7178 29 6 4.4388 -1.0694 2.5514 30 6 3.8275 -0.2837 1.3849 31 1 -0.4850 0.8400 -0.0004 32 1 3.6941 -2.8861 -0.8602 33 1 5.0313 -1.7135 -0.7418 34 1 5.6630 -3.6715 0.5429 35 1 4.0982 -3.6732 1.3966 36 1 7.4434 -2.0356 0.9759 37 1 7.1400 -0.6252 2.1248 38 1 6.8107 -4.4620 1.9092 39 1 7.2667 -6.1968 1.5715 40 1 7.9450 -8.5161 1.2648 41 1 9.9098 -11.2008 5.0641 42 1 9.6057 -9.0298 6.4710 43 1 8.5016 -6.3329 5.6774 44 1 4.9557 -0.3836 3.2227 45 1 3.6501 -1.5903 3.0942 46 1 4.5895 0.3513 0.9330 47 1 3.0057 0.3322 1.7501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016802350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:14 Heat of formation + Delta-G solvation = 54.438820 kcal Electronic energy + Delta-G solvation = -28376.990559 eV Core-core repulsion = 24525.583432 eV Total energy + Delta-G solvation = -3851.407127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24758 -41.16934 -39.89175 -37.60564 -37.22463 -34.57328 -33.60657 -32.97054 -32.05124 -30.85508 -30.07969 -29.66934 -26.03384 -25.21532 -24.49194 -23.35245 -23.05799 -22.46116 -21.73726 -21.24356 -19.89329 -19.17349 -18.65523 -18.13374 -17.59119 -17.03667 -16.84844 -16.01061 -15.92980 -15.82068 -15.47405 -15.32877 -15.24333 -14.96136 -14.80173 -14.56438 -14.35965 -14.07780 -14.01176 -13.87171 -13.63867 -13.44041 -13.40784 -12.92659 -12.68269 -12.52601 -12.36949 -12.25389 -12.11286 -11.91273 -11.63925 -11.46049 -11.32700 -11.10145 -10.81555 -10.74870 -10.61982 -9.73227 -9.24864 -8.81340 -8.74258 -8.15187 -5.49031 -0.08721 0.25386 1.31768 1.42140 1.52033 1.78018 1.85675 2.03957 2.22693 2.43620 2.83577 3.02194 3.09851 3.37841 3.66458 3.69841 3.76692 3.81674 3.92174 3.95066 4.04050 4.17456 4.28097 4.39258 4.42134 4.52460 4.58822 4.69183 4.71752 4.73082 4.81926 4.89921 4.94870 4.95131 4.96658 5.02435 5.06969 5.12786 5.22774 5.32036 5.32894 5.37806 5.50761 5.53455 5.63083 5.72591 5.92034 6.07459 6.15923 6.51596 6.68461 6.97012 7.18903 7.66039 8.07432 9.04901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.002161 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.706065 B =12955.809502 C =13498.448850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.037 4.037 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.262 1.262 6 H -0.312 1.312 7 C -0.247 4.247 8 H 0.049 0.951 9 N -0.619 5.619 10 C 0.147 3.853 11 C -0.087 4.087 12 C -0.118 4.118 13 C -0.162 4.162 14 C 0.081 3.919 15 H 0.119 0.881 16 N -0.681 5.681 17 C 0.563 3.437 18 O -0.587 6.587 19 C -0.180 4.180 20 C -0.073 4.073 21 C -0.127 4.127 22 C 0.105 3.895 23 N -0.581 5.581 24 H 0.434 0.566 25 C 0.068 3.932 26 C -0.227 4.227 27 C -0.147 4.147 28 C -0.020 4.020 29 C -0.092 4.092 30 C 0.126 3.874 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.412 0.588 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.215 0.785 42 H 0.158 0.842 43 H 0.121 0.879 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.038 0.962 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.855 -21.969 5.230 33.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.231 4.231 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.187 1.187 6 H -0.241 1.241 7 C -0.377 4.377 8 H 0.066 0.934 9 N -0.344 5.344 10 C 0.022 3.978 11 C -0.126 4.126 12 C -0.120 4.120 13 C -0.200 4.200 14 C -0.025 4.025 15 H 0.137 0.863 16 N -0.332 5.332 17 C 0.353 3.647 18 O -0.469 6.469 19 C -0.184 4.184 20 C -0.092 4.092 21 C -0.148 4.148 22 C -0.005 4.005 23 N -0.184 5.184 24 H 0.274 0.726 25 C -0.058 4.058 26 C -0.251 4.251 27 C -0.152 4.152 28 C -0.040 4.040 29 C -0.132 4.132 30 C 0.001 3.999 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.252 0.748 39 H 0.168 0.832 40 H 0.175 0.825 41 H 0.231 0.769 42 H 0.175 0.825 43 H 0.139 0.861 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 24.848 -21.654 5.873 33.478 hybrid contribution -0.586 0.778 -0.465 1.079 sum 24.262 -20.875 5.408 32.460 Atomic orbital electron populations 1.69965 1.07480 1.27181 1.55903 1.26008 0.95860 1.01162 1.00118 0.85895 0.78379 0.79924 0.77959 1.19771 1.18656 1.24119 1.18849 0.86300 0.93113 1.39435 0.93361 1.44408 1.06667 1.38335 1.44941 1.20976 0.92020 0.90719 0.94070 1.21395 0.99616 0.96336 0.95224 1.21785 0.90520 0.99884 0.99798 1.23680 0.95987 0.99970 1.00398 1.21656 1.02276 0.81656 0.96921 0.86335 1.45162 1.62532 1.11598 1.13874 1.18532 0.76205 0.86593 0.83326 1.90726 1.57258 1.71117 1.27765 1.19515 1.09344 0.93083 0.96476 1.20844 0.97962 0.94755 0.95676 1.19999 1.02522 0.93979 0.98259 1.18650 0.99796 0.86356 0.95705 1.41892 1.53870 1.10151 1.12532 0.72565 1.22496 0.99608 1.00845 0.82842 1.22065 1.09771 0.92590 1.00658 1.19469 1.06164 0.94282 0.95253 1.20670 0.93119 0.92215 0.97985 1.21532 0.97368 0.97060 0.97219 1.21366 0.96545 0.92188 0.89838 0.93046 0.92464 0.94180 0.89047 0.92977 0.86675 0.87414 0.74845 0.83199 0.82463 0.76871 0.82475 0.86132 0.90336 0.93224 0.94449 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.02 13.97 21.65 0.30 -60.72 16 2 C -0.04 -2.18 5.24 84.86 0.44 -1.73 16 3 Si 0.95 46.99 24.44 68.60 1.68 48.67 16 4 H -0.27 -12.64 6.39 99.48 0.64 -12.00 16 5 H -0.26 -12.37 7.02 99.48 0.70 -11.67 16 6 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 7 C -0.25 -14.06 9.98 84.03 0.84 -13.22 16 8 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 9 N -0.62 -28.73 2.68 -699.84 -1.87 -30.61 16 10 C 0.15 5.32 6.48 86.27 0.56 5.88 16 11 C -0.09 -2.48 5.36 30.61 0.16 -2.31 16 12 C -0.12 -3.38 1.94 -52.17 -0.10 -3.48 16 13 C -0.16 -3.73 9.86 30.55 0.30 -3.43 16 14 C 0.08 2.13 6.14 44.94 0.28 2.40 16 15 H 0.12 3.56 7.40 -2.39 -0.02 3.54 16 16 N -0.68 -15.94 5.29 -445.83 -2.36 -18.30 16 17 C 0.56 15.74 7.76 86.73 0.67 16.41 16 18 O -0.59 -21.08 15.90 -3.96 -0.06 -21.14 16 19 C -0.18 -4.18 5.87 -20.09 -0.12 -4.30 16 20 C -0.07 -1.19 9.46 22.30 0.21 -0.98 16 21 C -0.13 -1.73 10.00 22.09 0.22 -1.51 16 22 C 0.11 1.62 7.27 39.19 0.28 1.90 16 23 N -0.58 -4.88 6.05 -187.48 -1.13 -6.02 16 24 H 0.43 0.64 8.96 -92.71 -0.83 -0.19 16 25 C 0.07 0.53 11.81 82.99 0.98 1.51 16 26 C -0.23 -3.24 11.09 23.52 0.26 -2.98 16 27 C -0.15 -2.92 6.36 -20.21 -0.13 -3.05 16 28 C -0.02 -0.49 9.64 22.73 0.22 -0.27 16 29 C -0.09 -3.21 5.83 30.77 0.18 -3.03 16 30 C 0.13 5.29 4.23 86.43 0.37 5.66 16 31 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.06 2.11 7.92 -2.39 -0.02 2.09 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.84 6.75 -2.39 -0.02 1.82 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.41 7.24 5.12 -92.70 -0.47 6.77 16 39 H 0.15 1.67 6.36 -2.91 -0.02 1.65 16 40 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.21 -0.23 8.06 -2.91 -0.02 -0.26 16 42 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.12 3.12 7.64 -2.91 -0.02 3.10 16 44 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.04 1.49 7.44 -2.39 -0.02 1.47 16 47 H 0.05 2.26 4.36 -2.39 -0.01 2.24 16 Total: -1.00 -80.33 374.51 1.81 -78.52 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.37 Total: 16.12 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 5.63 Total: -6.53 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -5.07 Total: -115.64 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.06 Total: -21.14 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.68 Total: 48.67 kcal Total: -80.33 1.81 -78.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016802350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.961 kcal (2) G-P(sol) polarization free energy of solvation -80.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds