Wall clock time and date at job start Tue Mar 31 2020 22:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00352 * 2 1 4 4 H 1.48493 * 109.47136 * 270.00261 * 3 2 1 5 5 H 1.48502 * 109.46693 * 30.00143 * 3 2 1 6 6 H 1.48500 * 109.47189 * 149.99805 * 3 2 1 7 7 C 1.38814 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00589 * 190.27248 * 7 2 1 9 9 N 1.36936 * 119.99750 * 10.27756 * 7 2 1 10 10 C 1.46923 * 120.63357 * 32.62583 * 9 7 2 11 11 C 1.53193 * 108.77589 * 126.37339 * 10 9 7 12 12 C 1.53038 * 109.31181 * 54.63653 * 11 10 9 13 13 C 1.53044 * 109.53847 * 298.63221 * 12 11 10 14 14 C 1.46926 * 120.62978 * 212.35232 * 9 7 2 15 15 H 1.09000 * 109.58791 * 113.83798 * 14 9 7 16 16 C 1.53007 * 109.58770 * 353.41465 * 14 9 7 17 17 N 1.46507 * 109.46934 * 60.12387 * 16 14 9 18 18 C 1.34774 * 120.00141 * 180.02562 * 17 16 14 19 19 O 1.21605 * 119.99625 * 0.02562 * 18 17 16 20 20 C 1.47427 * 120.00139 * 180.02562 * 18 17 16 21 21 C 1.38737 * 120.33415 * 0.02562 * 20 18 17 22 22 C 1.38869 * 120.72595 * 180.02562 * 21 20 18 23 23 C 1.36347 * 121.05884 * 359.95092 * 22 21 20 24 24 C 1.40442 * 120.08805 * 0.02562 * 23 22 21 25 25 C 1.40806 * 121.27209 * 179.97438 * 24 23 22 26 26 C 1.36636 * 118.15111 * 179.97438 * 25 24 23 27 27 C 1.39232 * 119.91165 * 0.02562 * 26 25 24 28 28 N 1.31226 * 121.69600 * 359.97438 * 27 26 25 29 29 C 1.33350 * 121.35296 * 359.79768 * 28 27 26 30 30 H 0.97008 * 119.99462 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58868 * 246.16087 * 10 9 7 32 32 H 1.08995 * 109.58777 * 6.44336 * 10 9 7 33 33 H 1.08995 * 109.49775 * 174.59138 * 11 10 9 34 34 H 1.09007 * 109.49482 * 294.68471 * 11 10 9 35 35 H 1.09000 * 109.46495 * 58.65849 * 12 11 10 36 36 H 1.09006 * 109.46085 * 178.62983 * 12 11 10 37 37 H 1.09005 * 109.49790 * 181.31273 * 13 12 11 38 38 H 1.08991 * 109.50067 * 301.41988 * 13 12 11 39 39 H 1.08995 * 109.47386 * 180.12155 * 16 14 9 40 40 H 1.08997 * 109.46602 * 300.12742 * 16 14 9 41 41 H 0.97005 * 119.99514 * 0.02562 * 17 16 14 42 42 H 1.08002 * 119.64189 * 359.97438 * 21 20 18 43 43 H 1.07999 * 119.47200 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.96165 * 180.02562 * 23 22 21 45 45 H 1.07994 * 120.92078 * 0.02562 * 25 24 23 46 46 H 1.08004 * 120.03782 * 180.02562 * 26 25 24 47 47 H 1.07995 * 119.14808 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0773 -1.2098 0.1662 9 7 1.3420 -2.3784 -0.2127 10 6 0.1673 -2.4237 -1.0940 11 6 0.3854 -3.5111 -2.1508 12 6 0.7005 -4.8372 -1.4549 13 6 1.9863 -4.6934 -0.6374 14 6 1.7897 -3.6205 0.4321 15 1 1.0363 -3.9537 1.1459 16 6 3.1140 -3.3734 1.1575 17 7 2.9264 -2.3384 2.1773 18 6 3.9646 -1.9536 2.9458 19 8 5.0571 -2.4651 2.7923 20 6 3.7757 -0.9125 3.9724 21 6 2.5322 -0.3247 4.1538 22 6 2.3453 0.6571 5.1180 23 6 3.3748 1.0687 5.9115 24 6 4.6501 0.4999 5.7618 25 6 5.7310 0.9066 6.5674 26 6 6.9440 0.3101 6.3677 27 6 7.0830 -0.6699 5.3886 28 7 6.0724 -1.0453 4.6404 29 6 4.8619 -0.5058 4.7880 30 1 -0.4850 0.8402 0.0004 31 1 -0.7210 -2.6574 -0.5072 32 1 0.0391 -1.4575 -1.5819 33 1 -0.5175 -3.6209 -2.7514 34 1 1.2193 -3.2308 -2.7945 35 1 -0.1229 -5.1045 -0.7926 36 1 0.8321 -5.6181 -2.2039 37 1 2.2228 -5.6448 -0.1608 38 1 2.8050 -4.4020 -1.2953 39 1 3.4454 -4.2963 1.6332 40 1 3.8654 -3.0443 0.4397 41 1 2.0550 -1.9302 2.2994 42 1 1.7005 -0.6334 3.5378 43 1 1.3687 1.1013 5.2416 44 1 3.2095 1.8333 6.6561 45 1 5.6046 1.6682 7.3225 46 1 7.7937 0.5985 6.9688 47 1 8.0475 -1.1329 5.2410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024536513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:29 Heat of formation + Delta-G solvation = 47.122841 kcal Electronic energy + Delta-G solvation = -29974.993661 eV Core-core repulsion = 26123.269289 eV Total energy + Delta-G solvation = -3851.724372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82083 -38.94646 -37.63143 -36.75868 -34.06308 -33.32207 -33.06259 -31.09593 -30.40364 -29.96334 -29.67805 -26.05996 -24.96106 -24.29478 -23.36203 -22.73073 -22.10535 -20.67026 -19.80252 -19.08641 -18.10985 -17.60521 -16.78353 -16.38560 -15.68234 -15.53481 -15.13899 -14.57533 -14.53978 -14.09574 -14.01822 -13.81499 -13.72484 -13.43818 -13.38027 -12.98367 -12.91534 -12.70790 -12.39463 -11.99140 -11.96766 -11.77562 -11.56740 -11.29907 -11.14631 -10.92515 -10.80025 -10.53992 -10.41165 -10.26269 -10.11876 -9.98129 -9.62858 -9.48517 -9.38195 -8.83376 -8.74608 -8.57015 -8.27136 -8.01111 -6.63874 -5.84852 -3.33220 0.26459 0.87878 1.85531 2.89565 3.31746 3.39572 3.45336 3.67171 3.85590 4.35254 4.39608 4.42539 4.62158 4.76407 4.85506 4.91805 5.12908 5.20460 5.25727 5.32285 5.35797 5.51248 5.55128 5.65262 5.70361 5.76829 5.91966 5.97977 6.01553 6.06482 6.11663 6.19877 6.29033 6.35322 6.38039 6.43520 6.45317 6.52740 6.62343 6.72962 6.75152 6.85367 6.87712 7.01570 7.28148 7.39848 7.67510 7.79750 8.10822 8.38408 8.42251 9.02100 9.16893 9.76909 10.35660 11.21494 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.003971 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.020560 B = 7049.191920 C = 8194.000955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.010 3.990 3 Si 0.886 3.114 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.161 3.839 15 H 0.032 0.968 16 C 0.137 3.863 17 N -0.693 5.693 18 C 0.546 3.454 19 O -0.523 6.523 20 C -0.099 4.099 21 C -0.058 4.058 22 C -0.118 4.118 23 C -0.084 4.084 24 C -0.112 4.112 25 C -0.061 4.061 26 C -0.180 4.180 27 C 0.123 3.877 28 N -0.432 5.432 29 C 0.160 3.840 30 H 0.254 0.746 31 H 0.018 0.982 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.411 0.589 42 H 0.144 0.856 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 -0.604 11.172 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.189 4.189 3 Si 0.716 3.284 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.346 5.346 18 C 0.331 3.669 19 O -0.401 6.401 20 C -0.102 4.102 21 C -0.079 4.079 22 C -0.136 4.136 23 C -0.103 4.103 24 C -0.114 4.114 25 C -0.087 4.087 26 C -0.200 4.200 27 C -0.050 4.050 28 N -0.138 5.138 29 C 0.037 3.963 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.352 -1.496 10.363 11.759 hybrid contribution -0.147 1.966 0.548 2.047 sum 5.205 0.471 10.911 12.098 Atomic orbital electron populations 1.69982 1.05021 1.25377 1.54125 1.25071 0.95196 0.97865 1.00735 0.86518 0.79574 0.84265 0.78071 1.21386 1.21542 1.20197 1.19234 0.91246 0.83521 1.43643 0.91254 1.44071 1.32936 1.03241 1.51040 1.20776 0.88081 0.96917 0.89453 1.22203 0.99808 0.96846 0.99536 1.21362 0.97405 0.97382 0.98332 1.21870 0.98057 0.98158 0.98661 1.20653 0.93064 0.88556 0.92359 0.95090 1.21264 0.98121 0.89517 0.89765 1.45945 1.13141 1.40379 1.35121 1.17833 0.84891 0.82605 0.81569 1.90781 1.24484 1.55443 1.69375 1.20064 0.92669 0.99521 0.97983 1.21691 0.96636 0.93789 0.95772 1.20907 0.99767 0.97323 0.95601 1.21093 0.91476 0.98754 0.98977 1.18825 0.95392 0.98766 0.98452 1.21405 0.92072 0.98019 0.97249 1.21903 0.98443 0.99027 1.00611 1.23134 0.98055 0.93298 0.90513 1.68332 0.98447 1.24306 1.22707 1.18652 0.91632 0.92676 0.93314 0.93629 0.96400 0.89590 0.93584 0.92881 0.92893 0.93756 0.92987 0.92097 0.92652 0.91625 0.75052 0.83816 0.84791 0.85133 0.84559 0.84790 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.87 11.12 55.49 0.62 -23.26 16 2 C 0.01 0.27 5.05 -17.43 -0.09 0.18 16 3 Si 0.89 21.19 29.57 -169.99 -5.03 16.16 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.14 6.92 -15.06 -0.10 -6.25 16 8 H 0.07 1.82 5.91 -52.49 -0.31 1.51 16 9 N -0.59 -13.40 2.97 -165.03 -0.49 -13.89 16 10 C 0.17 3.88 5.25 -3.71 -0.02 3.86 16 11 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 12 C -0.11 -1.76 5.89 -26.69 -0.16 -1.92 16 13 C -0.13 -2.17 5.35 -26.83 -0.14 -2.31 16 14 C 0.16 3.12 3.00 -67.82 -0.20 2.92 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.69 4.42 -4.03 -0.02 2.67 16 17 N -0.69 -13.95 3.81 -61.38 -0.23 -14.18 16 18 C 0.55 11.52 7.76 -12.52 -0.10 11.42 16 19 O -0.52 -12.38 15.19 5.27 0.08 -12.30 16 20 C -0.10 -1.86 5.90 -104.62 -0.62 -2.48 16 21 C -0.06 -0.95 9.52 -39.16 -0.37 -1.32 16 22 C -0.12 -1.57 9.93 -40.03 -0.40 -1.97 16 23 C -0.08 -1.03 9.75 -39.43 -0.38 -1.42 16 24 C -0.11 -1.61 5.74 -106.82 -0.61 -2.22 16 25 C -0.06 -0.68 9.90 -39.19 -0.39 -1.07 16 26 C -0.18 -1.93 10.03 -39.79 -0.40 -2.32 16 27 C 0.12 1.67 11.15 -17.44 -0.19 1.48 16 28 N -0.43 -7.93 8.44 -10.76 -0.09 -8.02 16 29 C 0.16 2.88 6.61 -84.58 -0.56 2.33 16 30 H 0.25 6.62 8.31 -40.82 -0.34 6.29 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 2.18 6.18 -51.93 -0.32 1.86 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.41 7.42 -51.93 -0.39 1.03 16 41 H 0.41 8.32 5.41 -40.82 -0.22 8.10 16 42 H 0.14 2.35 6.37 -52.49 -0.33 2.02 16 43 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 47 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -31.31 373.82 -11.06 -42.37 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.63 Total: 8.77 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -4.92 Total: -1.29 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.20 Total: -59.34 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.31 -11.06 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024536513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.489 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds