Wall clock time and date at job start Tue Mar 31 2020 22:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47073 * 91.06688 * 3 2 1 5 5 H 1.48506 * 109.46963 * 211.06412 * 3 2 1 6 6 H 1.48497 * 109.47524 * 331.06527 * 3 2 1 7 7 C 1.38812 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00150 * 16.95013 * 7 2 1 9 9 N 1.36936 * 119.99838 * 196.94831 * 7 2 1 10 10 C 1.46924 * 120.63309 * 31.18836 * 9 7 2 11 11 C 1.53188 * 108.77868 * 126.36359 * 10 9 7 12 12 C 1.53040 * 109.31071 * 54.63327 * 11 10 9 13 13 C 1.53031 * 109.53967 * 298.63524 * 12 11 10 14 14 C 1.46926 * 120.62944 * 210.90103 * 9 7 2 15 15 H 1.09004 * 109.58851 * 113.84369 * 14 9 7 16 16 C 1.53006 * 109.58776 * 353.42169 * 14 9 7 17 17 N 1.46500 * 109.46769 * 60.25341 * 16 14 9 18 18 C 1.34779 * 119.99800 * 179.97438 * 17 16 14 19 19 O 1.21563 * 119.99848 * 0.02562 * 18 17 16 20 20 C 1.47771 * 119.99994 * 180.02562 * 18 17 16 21 21 C 1.40634 * 119.80554 * 359.97438 * 20 18 17 22 22 C 1.35702 * 120.92220 * 179.97438 * 21 20 18 23 23 C 1.40761 * 120.11195 * 0.02562 * 22 21 20 24 24 N 1.33648 * 120.83731 * 180.02562 * 23 22 21 25 25 C 1.31124 * 121.39072 * 179.97438 * 24 23 22 26 26 C 1.39309 * 121.77655 * 0.02562 * 25 24 23 27 27 C 1.36583 * 119.90036 * 359.97438 * 26 25 24 28 28 C 1.40894 * 118.15738 * 0.02562 * 27 26 25 29 29 C 1.38545 * 119.80307 * 179.72800 * 20 18 17 30 30 H 0.96997 * 120.00015 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58359 * 246.15430 * 10 9 7 32 32 H 1.09008 * 109.58378 * 6.43352 * 10 9 7 33 33 H 1.08997 * 109.49784 * 174.58809 * 11 10 9 34 34 H 1.08997 * 109.50065 * 294.68440 * 11 10 9 35 35 H 1.09004 * 109.45714 * 58.66040 * 12 11 10 36 36 H 1.09001 * 109.45976 * 178.62486 * 12 11 10 37 37 H 1.09005 * 109.49786 * 181.31412 * 13 12 11 38 38 H 1.09001 * 109.50091 * 301.38053 * 13 12 11 39 39 H 1.09002 * 109.47047 * 180.25288 * 16 14 9 40 40 H 1.08992 * 109.46998 * 300.25739 * 16 14 9 41 41 H 0.97003 * 120.00443 * 359.97438 * 17 16 14 42 42 H 1.07998 * 119.53781 * 359.97438 * 21 20 18 43 43 H 1.08002 * 119.94154 * 180.02562 * 22 21 20 44 44 H 1.08006 * 119.11231 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.05345 * 179.97438 * 26 25 24 46 46 H 1.07990 * 120.91924 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.30015 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5202 2.0334 1.3999 5 1 3.5363 1.4468 -0.7225 6 1 1.4366 2.6591 -0.6773 7 6 2.0103 -1.2021 0.0005 8 1 1.5055 -2.1173 -0.2717 9 7 3.3350 -1.2277 0.3463 10 6 3.8736 -0.2670 1.3187 11 6 4.5937 -1.0396 2.4283 12 6 5.6460 -1.9589 1.8039 13 6 4.9607 -2.9676 0.8794 14 6 4.2436 -2.2204 -0.2435 15 1 4.9787 -1.7159 -0.8707 16 6 3.4409 -3.2133 -1.0867 17 7 2.7494 -2.4951 -2.1601 18 6 1.9770 -3.1705 -3.0341 19 8 1.8538 -4.3755 -2.9313 20 6 1.2799 -2.4462 -4.1172 21 6 1.4249 -1.0521 -4.2319 22 6 0.7956 -0.3643 -5.2180 23 6 -0.0169 -1.0438 -6.1451 24 7 -0.6430 -0.3810 -7.1223 25 6 -1.4020 -1.0030 -7.9920 26 6 -1.5954 -2.3817 -7.9432 27 6 -0.9852 -3.1208 -6.9702 28 6 -0.1705 -2.4489 -6.0375 29 6 0.4915 -3.1452 -5.0167 30 1 -0.4850 0.8400 -0.0004 31 1 4.5779 0.4001 0.8216 32 1 3.0580 0.3160 1.7466 33 1 5.0800 -0.3366 3.1045 34 1 3.8710 -1.6381 2.9829 35 1 6.3543 -1.3622 1.2291 36 1 6.1767 -2.4919 2.5929 37 1 5.7082 -3.6368 0.4533 38 1 4.2349 -3.5483 1.4488 39 1 4.1161 -3.9514 -1.5196 40 1 2.7084 -3.7167 -0.4558 41 1 2.8474 -1.5335 -2.2419 42 1 2.0458 -0.5214 -3.5253 43 1 0.9184 0.7062 -5.2916 44 1 -1.8904 -0.4310 -8.7672 45 1 -2.2269 -2.8655 -8.6737 46 1 -1.1240 -4.1904 -6.9167 47 1 0.3841 -4.2163 -4.9294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024631321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:33 Heat of formation + Delta-G solvation = 44.319561 kcal Electronic energy + Delta-G solvation = -29566.926399 eV Core-core repulsion = 25715.080468 eV Total energy + Delta-G solvation = -3851.845931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.80914 -39.36897 -38.08901 -36.49156 -34.39258 -33.47313 -33.09137 -31.40129 -30.77307 -30.23081 -29.94363 -26.42165 -25.12607 -23.96336 -23.72970 -22.72337 -22.02801 -20.93939 -20.42519 -19.47267 -18.09859 -17.67197 -16.87000 -16.53830 -15.83351 -15.55386 -15.31536 -14.99336 -14.44757 -14.40786 -13.95594 -13.91409 -13.76849 -13.70294 -13.55163 -13.29989 -13.24119 -13.07980 -12.54822 -12.18706 -12.11164 -11.96284 -11.70433 -11.50585 -11.34123 -11.27458 -10.86817 -10.69087 -10.59006 -10.47437 -10.23267 -9.98691 -9.67744 -9.53760 -9.52215 -9.37806 -8.79433 -8.72075 -8.35219 -8.13534 -6.98948 -6.01145 -3.43471 0.30462 0.73836 1.97640 2.62463 3.23813 3.38623 3.42217 3.59982 3.76673 4.23142 4.27203 4.43331 4.58967 4.68172 4.75783 4.83103 4.99468 5.11100 5.18857 5.25511 5.27423 5.31122 5.38468 5.47591 5.48717 5.71883 5.78030 5.80951 5.91260 5.93376 5.99718 6.07549 6.08629 6.15248 6.18386 6.34964 6.38644 6.39496 6.44218 6.44855 6.50993 6.53738 6.66399 6.71730 6.82642 6.94413 7.08463 7.87455 7.89687 8.16095 8.29724 8.76916 8.85782 9.62919 10.01655 11.13039 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.003482 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.063637 B = 8040.383393 C = 9251.440333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 0.877 3.123 4 H -0.287 1.287 5 H -0.271 1.271 6 H -0.304 1.304 7 C -0.267 4.267 8 H 0.094 0.906 9 N -0.604 5.604 10 C 0.125 3.875 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.129 4.129 14 C 0.163 3.837 15 H 0.037 0.963 16 C 0.135 3.865 17 N -0.685 5.685 18 C 0.554 3.446 19 O -0.559 6.559 20 C -0.113 4.113 21 C -0.060 4.060 22 C -0.101 4.101 23 C 0.142 3.858 24 N -0.477 5.477 25 C 0.132 3.868 26 C -0.186 4.186 27 C -0.046 4.046 28 C -0.113 4.113 29 C -0.036 4.036 30 H 0.263 0.737 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.411 0.589 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.157 0.843 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -3.658 -10.637 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.169 4.169 3 Si 0.707 3.293 4 H -0.215 1.215 5 H -0.196 1.196 6 H -0.232 1.232 7 C -0.395 4.395 8 H 0.111 0.889 9 N -0.330 5.330 10 C -0.001 4.001 11 C -0.175 4.175 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.057 3.943 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.335 5.335 18 C 0.341 3.659 19 O -0.440 6.440 20 C -0.116 4.116 21 C -0.080 4.080 22 C -0.120 4.120 23 C 0.020 3.980 24 N -0.185 5.185 25 C -0.041 4.041 26 C -0.206 4.206 27 C -0.072 4.072 28 C -0.115 4.115 29 C -0.056 4.056 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.249 0.751 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.174 0.826 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.991 -3.470 -10.506 11.762 hybrid contribution 0.163 0.719 0.280 0.788 sum 4.153 -2.752 -10.226 11.375 Atomic orbital electron populations 1.69802 1.05645 1.26555 1.52179 1.25335 0.95093 0.97290 0.99227 0.87085 0.79659 0.85031 0.77520 1.21488 1.19587 1.23177 1.19000 0.83295 0.94611 1.42623 0.88907 1.44409 1.06504 1.36106 1.45963 1.21394 0.96823 0.92043 0.89803 1.22003 0.98092 0.98827 0.98592 1.21365 0.97494 0.97448 0.98277 1.21864 0.99260 0.97818 0.97914 1.20665 0.91475 0.89922 0.92277 0.94566 1.21310 0.95387 0.93945 0.88273 1.45870 1.47142 1.12213 1.28311 1.18049 0.79320 0.86759 0.81815 1.90708 1.64194 1.14173 1.74935 1.20051 1.00517 0.93898 0.97162 1.21082 0.97503 0.93001 0.96421 1.20658 0.96726 1.00592 0.93979 1.18979 0.95574 0.89661 0.93750 1.68051 1.07799 1.39464 1.03166 1.22966 0.93309 0.92139 0.95670 1.21833 1.02555 0.95648 1.00591 1.21535 0.92949 1.00460 0.92285 1.18782 1.00401 0.94390 0.97886 1.21377 0.92542 1.00384 0.91301 0.92668 0.95847 0.90942 0.93067 0.91798 0.92746 0.93036 0.92473 0.91584 0.92184 0.90998 0.75096 0.84502 0.84336 0.82551 0.84597 0.84232 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 13.97 55.49 0.78 -25.19 16 2 C 0.03 0.81 5.27 -17.43 -0.09 0.72 16 3 Si 0.88 20.69 24.32 -169.99 -4.13 16.56 16 4 H -0.29 -6.73 6.52 56.52 0.37 -6.37 16 5 H -0.27 -6.13 6.74 56.52 0.38 -5.75 16 6 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 7 C -0.27 -6.64 7.44 -15.06 -0.11 -6.75 16 8 H 0.09 2.56 6.04 -52.48 -0.32 2.24 16 9 N -0.60 -12.81 2.72 -165.02 -0.45 -13.26 16 10 C 0.12 2.51 4.20 -3.71 -0.02 2.50 16 11 C -0.14 -2.26 6.08 -26.61 -0.16 -2.43 16 12 C -0.11 -1.57 5.88 -26.69 -0.16 -1.72 16 13 C -0.13 -1.95 5.34 -26.84 -0.14 -2.10 16 14 C 0.16 2.88 2.99 -67.82 -0.20 2.68 16 15 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 16 C 0.13 2.43 4.42 -4.04 -0.02 2.42 16 17 N -0.69 -12.92 3.79 -61.27 -0.23 -13.15 16 18 C 0.55 10.77 7.77 -12.36 -0.10 10.68 16 19 O -0.56 -12.05 16.31 5.31 0.09 -11.96 16 20 C -0.11 -1.98 5.87 -104.98 -0.62 -2.59 16 21 C -0.06 -0.99 9.44 -39.59 -0.37 -1.37 16 22 C -0.10 -1.60 9.95 -39.54 -0.39 -1.99 16 23 C 0.14 2.22 6.61 -84.78 -0.56 1.66 16 24 N -0.48 -6.98 10.33 -10.92 -0.11 -7.09 16 25 C 0.13 1.46 11.14 -17.46 -0.19 1.27 16 26 C -0.19 -1.80 10.03 -39.78 -0.40 -2.20 16 27 C -0.05 -0.52 9.89 -39.17 -0.39 -0.91 16 28 C -0.11 -1.64 5.74 -106.82 -0.61 -2.26 16 29 C -0.04 -0.57 9.35 -38.74 -0.36 -0.93 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.02 0.47 7.04 -51.93 -0.37 0.10 16 32 H 0.07 1.63 4.64 -51.92 -0.24 1.39 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.47 7.42 -51.93 -0.39 1.08 16 41 H 0.41 7.78 5.38 -40.82 -0.22 7.56 16 42 H 0.14 2.23 6.35 -52.49 -0.33 1.90 16 43 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 45 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 46 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 47 H 0.14 2.09 7.62 -52.49 -0.40 1.69 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -31.29 369.37 -9.92 -41.21 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.52 Total: 10.64 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -4.90 Total: -3.33 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.02 Total: -58.69 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.13 Total: 16.56 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.29 -9.92 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024631321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.533 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds