Wall clock time and date at job start Tue Mar 31 2020 22:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48503 * 109.47073 * 91.06688 * 3 2 1 5 5 H 1.48506 * 109.46963 * 211.06412 * 3 2 1 6 6 H 1.48497 * 109.47524 * 331.06527 * 3 2 1 7 7 C 1.38812 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00150 * 16.95013 * 7 2 1 9 9 N 1.36936 * 119.99838 * 196.94831 * 7 2 1 10 10 C 1.46924 * 120.63309 * 31.18836 * 9 7 2 11 11 C 1.53188 * 108.77868 * 126.36359 * 10 9 7 12 12 C 1.53040 * 109.31071 * 54.63327 * 11 10 9 13 13 C 1.53031 * 109.53967 * 298.63524 * 12 11 10 14 14 C 1.46926 * 120.62944 * 210.90103 * 9 7 2 15 15 H 1.09004 * 109.58851 * 113.84369 * 14 9 7 16 16 C 1.53006 * 109.58776 * 353.42169 * 14 9 7 17 17 N 1.46500 * 109.46769 * 60.25341 * 16 14 9 18 18 C 1.34779 * 119.99800 * 179.97438 * 17 16 14 19 19 O 1.21563 * 119.99848 * 0.02562 * 18 17 16 20 20 C 1.47771 * 119.99994 * 180.02562 * 18 17 16 21 21 C 1.40634 * 119.80554 * 359.97438 * 20 18 17 22 22 C 1.35702 * 120.92220 * 179.97438 * 21 20 18 23 23 C 1.40761 * 120.11195 * 0.02562 * 22 21 20 24 24 N 1.33648 * 120.83731 * 180.02562 * 23 22 21 25 25 C 1.31124 * 121.39072 * 179.97438 * 24 23 22 26 26 C 1.39309 * 121.77655 * 0.02562 * 25 24 23 27 27 C 1.36583 * 119.90036 * 359.97438 * 26 25 24 28 28 C 1.40894 * 118.15738 * 0.02562 * 27 26 25 29 29 C 1.38545 * 119.80307 * 179.72800 * 20 18 17 30 30 H 0.96997 * 120.00015 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58359 * 246.15430 * 10 9 7 32 32 H 1.09008 * 109.58378 * 6.43352 * 10 9 7 33 33 H 1.08997 * 109.49784 * 174.58809 * 11 10 9 34 34 H 1.08997 * 109.50065 * 294.68440 * 11 10 9 35 35 H 1.09004 * 109.45714 * 58.66040 * 12 11 10 36 36 H 1.09001 * 109.45976 * 178.62486 * 12 11 10 37 37 H 1.09005 * 109.49786 * 181.31412 * 13 12 11 38 38 H 1.09001 * 109.50091 * 301.38053 * 13 12 11 39 39 H 1.09002 * 109.47047 * 180.25288 * 16 14 9 40 40 H 1.08992 * 109.46998 * 300.25739 * 16 14 9 41 41 H 0.97003 * 120.00443 * 359.97438 * 17 16 14 42 42 H 1.07998 * 119.53781 * 359.97438 * 21 20 18 43 43 H 1.08002 * 119.94154 * 180.02562 * 22 21 20 44 44 H 1.08006 * 119.11231 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.05345 * 179.97438 * 26 25 24 46 46 H 1.07990 * 120.91924 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.30015 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5202 2.0334 1.3999 5 1 3.5363 1.4468 -0.7225 6 1 1.4366 2.6591 -0.6773 7 6 2.0103 -1.2021 0.0005 8 1 1.5055 -2.1173 -0.2717 9 7 3.3350 -1.2277 0.3463 10 6 3.8736 -0.2670 1.3187 11 6 4.5937 -1.0396 2.4283 12 6 5.6460 -1.9589 1.8039 13 6 4.9607 -2.9676 0.8794 14 6 4.2436 -2.2204 -0.2435 15 1 4.9787 -1.7159 -0.8707 16 6 3.4409 -3.2133 -1.0867 17 7 2.7494 -2.4951 -2.1601 18 6 1.9770 -3.1705 -3.0341 19 8 1.8538 -4.3755 -2.9313 20 6 1.2799 -2.4462 -4.1172 21 6 1.4249 -1.0521 -4.2319 22 6 0.7956 -0.3643 -5.2180 23 6 -0.0169 -1.0438 -6.1451 24 7 -0.6430 -0.3810 -7.1223 25 6 -1.4020 -1.0030 -7.9920 26 6 -1.5954 -2.3817 -7.9432 27 6 -0.9852 -3.1208 -6.9702 28 6 -0.1705 -2.4489 -6.0375 29 6 0.4915 -3.1452 -5.0167 30 1 -0.4850 0.8400 -0.0004 31 1 4.5779 0.4001 0.8216 32 1 3.0580 0.3160 1.7466 33 1 5.0800 -0.3366 3.1045 34 1 3.8710 -1.6381 2.9829 35 1 6.3543 -1.3622 1.2291 36 1 6.1767 -2.4919 2.5929 37 1 5.7082 -3.6368 0.4533 38 1 4.2349 -3.5483 1.4488 39 1 4.1161 -3.9514 -1.5196 40 1 2.7084 -3.7167 -0.4558 41 1 2.8474 -1.5335 -2.2419 42 1 2.0458 -0.5214 -3.5253 43 1 0.9184 0.7062 -5.2916 44 1 -1.8904 -0.4310 -8.7672 45 1 -2.2269 -2.8655 -8.6737 46 1 -1.1240 -4.1904 -6.9167 47 1 0.3841 -4.2163 -4.9294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024631321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:33 Heat of formation + Delta-G solvation = 24.797186 kcal Electronic energy + Delta-G solvation = -29567.772953 eV Core-core repulsion = 25715.080468 eV Total energy + Delta-G solvation = -3852.692485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.92066 -40.80526 -39.56076 -37.68985 -35.88114 -34.88161 -34.50021 -32.79046 -32.51087 -31.42999 -31.08768 -27.89950 -26.68080 -25.20701 -24.84809 -24.30925 -23.16145 -22.32923 -21.87508 -20.92224 -19.44298 -18.89677 -18.26352 -17.91917 -17.42579 -16.81451 -16.72347 -16.63465 -15.75827 -15.53079 -15.29823 -15.26204 -15.18197 -15.02173 -14.90405 -14.77525 -14.45103 -14.29909 -13.98509 -13.73232 -13.64113 -13.23794 -13.06631 -12.97591 -12.64796 -12.52845 -12.48810 -12.28645 -11.95395 -11.69369 -11.60238 -11.55650 -11.30073 -11.20652 -10.92943 -10.62420 -10.51200 -10.02177 -9.75993 -9.33214 -8.78969 -8.07382 -5.44628 -0.78748 -0.34266 0.88460 1.32968 1.41990 1.43453 1.51577 2.21394 2.41563 2.46109 3.07893 3.09649 3.27236 3.32149 3.54082 3.68956 3.75799 3.89447 3.97915 4.01751 4.06135 4.08033 4.18766 4.28439 4.32366 4.43509 4.52065 4.52582 4.62851 4.69678 4.75809 4.87199 4.88327 4.94448 4.97140 5.01959 5.06502 5.16811 5.20465 5.25161 5.26533 5.31289 5.31660 5.46709 5.56460 5.63899 5.76252 5.95935 6.26375 6.61956 6.89136 6.96752 7.23566 7.68194 8.09207 9.10926 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.003482 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.063637 B = 8040.383393 C = 9251.440333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.023 4.023 3 Si 0.934 3.066 4 H -0.284 1.284 5 H -0.252 1.252 6 H -0.319 1.319 7 C -0.231 4.231 8 H 0.058 0.942 9 N -0.617 5.617 10 C 0.118 3.882 11 C -0.131 4.131 12 C -0.103 4.103 13 C -0.125 4.125 14 C 0.162 3.838 15 H 0.055 0.945 16 C 0.137 3.863 17 N -0.687 5.687 18 C 0.551 3.449 19 O -0.588 6.588 20 C -0.144 4.144 21 C -0.071 4.071 22 C -0.110 4.110 23 C 0.125 3.875 24 N -0.511 5.511 25 C 0.138 3.862 26 C -0.169 4.169 27 C -0.051 4.051 28 C -0.129 4.129 29 C -0.028 4.028 30 H 0.257 0.743 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.409 0.591 42 H 0.130 0.870 43 H 0.144 0.856 44 H 0.196 0.804 45 H 0.183 0.817 46 H 0.170 0.830 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -4.113 -12.412 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.218 4.218 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.176 1.176 6 H -0.249 1.249 7 C -0.361 4.361 8 H 0.075 0.925 9 N -0.343 5.343 10 C -0.007 4.007 11 C -0.170 4.170 12 C -0.140 4.140 13 C -0.164 4.164 14 C 0.056 3.944 15 H 0.072 0.928 16 C 0.013 3.987 17 N -0.336 5.336 18 C 0.339 3.661 19 O -0.472 6.472 20 C -0.147 4.147 21 C -0.091 4.091 22 C -0.128 4.128 23 C 0.004 3.996 24 N -0.219 5.219 25 C -0.034 4.034 26 C -0.188 4.188 27 C -0.077 4.077 28 C -0.131 4.131 29 C -0.048 4.048 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.247 0.753 42 H 0.148 0.852 43 H 0.162 0.838 44 H 0.213 0.787 45 H 0.201 0.799 46 H 0.187 0.813 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.458 -3.934 -12.265 13.989 hybrid contribution -0.386 0.755 0.664 1.076 sum 5.072 -3.180 -11.601 13.055 Atomic orbital electron populations 1.69950 1.07458 1.26681 1.55887 1.25818 0.95412 1.00216 1.00349 0.86144 0.78888 0.81085 0.77492 1.21099 1.17562 1.24903 1.18742 0.84781 0.92926 1.39658 0.92480 1.44539 1.05700 1.37124 1.46899 1.21453 0.96356 0.92213 0.90677 1.21934 0.98300 0.99216 0.97567 1.21366 0.96839 0.96982 0.98858 1.21837 0.99468 0.98119 0.96961 1.20894 0.90989 0.89186 0.93301 0.92770 1.21349 0.94936 0.94486 0.87939 1.45902 1.47179 1.12116 1.28361 1.18402 0.78966 0.86562 0.82145 1.90663 1.65306 1.15258 1.75930 1.19974 1.02514 0.94310 0.97887 1.20979 0.98348 0.92814 0.96964 1.20784 0.96979 1.00943 0.94144 1.19119 0.95896 0.90342 0.94223 1.68094 1.09472 1.40302 1.04078 1.23801 0.91260 0.93483 0.94875 1.22346 1.01309 0.94938 1.00199 1.21948 0.91992 1.02122 0.91590 1.18998 1.01286 0.94238 0.98560 1.21539 0.91625 1.00679 0.90980 0.93421 0.94740 0.93742 0.90635 0.93381 0.91343 0.90289 0.89248 0.93111 0.89944 0.94149 0.75297 0.85233 0.83780 0.78715 0.79947 0.81301 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.19 13.97 21.65 0.30 -57.88 16 2 C -0.02 -1.25 5.27 84.86 0.45 -0.80 16 3 Si 0.93 44.06 24.32 68.60 1.67 45.73 16 4 H -0.28 -13.07 6.52 99.48 0.65 -12.43 16 5 H -0.25 -10.90 6.74 99.48 0.67 -10.23 16 6 H -0.32 -15.79 7.11 99.48 0.71 -15.09 16 7 C -0.23 -11.96 7.44 84.03 0.62 -11.34 16 8 H 0.06 3.36 6.04 -2.91 -0.02 3.34 16 9 N -0.62 -26.13 2.72 -676.00 -1.84 -27.97 16 10 C 0.12 4.60 4.20 86.36 0.36 4.96 16 11 C -0.13 -4.06 6.08 30.67 0.19 -3.88 16 12 C -0.10 -2.59 5.88 30.62 0.18 -2.41 16 13 C -0.12 -3.46 5.34 30.52 0.16 -3.29 16 14 C 0.16 5.52 2.99 44.83 0.13 5.66 16 15 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 16 C 0.14 5.03 4.42 86.38 0.38 5.41 16 17 N -0.69 -27.12 3.79 -466.04 -1.77 -28.89 16 18 C 0.55 22.68 7.77 86.76 0.67 23.35 16 19 O -0.59 -26.55 16.31 -3.91 -0.06 -26.61 16 20 C -0.14 -5.33 5.87 -20.10 -0.12 -5.45 16 21 C -0.07 -2.52 9.44 22.27 0.21 -2.31 16 22 C -0.11 -3.67 9.95 22.30 0.22 -3.45 16 23 C 0.12 3.96 6.61 40.36 0.27 4.22 16 24 N -0.51 -14.37 10.33 -188.45 -1.95 -16.31 16 25 C 0.14 2.59 11.14 85.06 0.95 3.54 16 26 C -0.17 -2.54 10.03 22.14 0.22 -2.32 16 27 C -0.05 -1.01 9.89 22.53 0.22 -0.78 16 28 C -0.13 -3.71 5.74 -21.29 -0.12 -3.83 16 29 C -0.03 -0.92 9.35 22.82 0.21 -0.70 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.03 1.29 7.04 -2.38 -0.02 1.27 16 32 H 0.04 1.99 4.64 -2.38 -0.01 1.98 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.04 1.73 7.42 -2.39 -0.02 1.72 16 41 H 0.41 16.27 5.38 -92.71 -0.50 15.77 16 42 H 0.13 4.61 6.35 -2.91 -0.02 4.59 16 43 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 44 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.17 2.28 8.06 -2.92 -0.02 2.25 16 47 H 0.15 4.48 7.62 -2.91 -0.02 4.45 16 Total: -1.00 -73.21 369.37 1.97 -71.24 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.40 Total: 34.13 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.22 Total: 6.58 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.25 Total: -131.05 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.06 Total: -26.61 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.73 kcal Total: -73.21 1.97 -71.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024631321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.034 kcal (2) G-P(sol) polarization free energy of solvation -73.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds