Wall clock time and date at job start Tue Mar 31 2020 22:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99657 * 2 1 4 4 H 1.48502 * 109.47354 * 269.99761 * 3 2 1 5 5 H 1.48499 * 109.47568 * 29.99903 * 3 2 1 6 6 H 1.48508 * 109.47185 * 149.99984 * 3 2 1 7 7 C 1.38806 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99472 * 165.37913 * 7 2 1 9 9 N 1.36931 * 120.00299 * 345.38179 * 7 2 1 10 10 C 1.46928 * 120.62930 * 328.40409 * 9 7 2 11 11 C 1.53192 * 108.77692 * 233.58666 * 10 9 7 12 12 C 1.53043 * 109.31359 * 305.36917 * 11 10 9 13 13 C 1.53039 * 109.54152 * 61.36083 * 12 11 10 14 14 C 1.46929 * 120.63218 * 148.38633 * 9 7 2 15 15 H 1.09006 * 109.70172 * 246.26896 * 14 9 7 16 16 C 1.53004 * 109.58621 * 6.62330 * 14 9 7 17 17 N 1.46499 * 109.46878 * 299.11093 * 16 14 9 18 18 C 1.34783 * 119.99805 * 179.97438 * 17 16 14 19 19 O 1.21559 * 119.99921 * 0.02562 * 18 17 16 20 20 C 1.47764 * 119.99699 * 180.02562 * 18 17 16 21 21 C 1.40634 * 119.81069 * 0.02562 * 20 18 17 22 22 C 1.35696 * 120.92570 * 180.02562 * 21 20 18 23 23 C 1.40759 * 120.10976 * 359.95777 * 22 21 20 24 24 N 1.33658 * 120.83298 * 180.31485 * 23 22 21 25 25 C 1.31121 * 121.39276 * 180.25604 * 24 23 22 26 26 C 1.39313 * 121.77039 * 359.44652 * 25 24 23 27 27 C 1.36581 * 119.90416 * 0.26853 * 26 25 24 28 28 C 1.40893 * 118.15917 * 0.02562 * 27 26 25 29 29 C 1.38553 * 119.80146 * 180.02562 * 20 18 17 30 30 H 0.96997 * 119.99984 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58430 * 113.80323 * 10 9 7 32 32 H 1.08996 * 109.70413 * 353.44759 * 10 9 7 33 33 H 1.08995 * 109.49918 * 185.41315 * 11 10 9 34 34 H 1.09000 * 109.49881 * 65.31569 * 11 10 9 35 35 H 1.09001 * 109.45666 * 301.34007 * 12 11 10 36 36 H 1.09001 * 109.44962 * 181.37909 * 12 11 10 37 37 H 1.08998 * 109.50034 * 178.68074 * 13 12 11 38 38 H 1.08999 * 109.51974 * 58.60568 * 13 12 11 39 39 H 1.08993 * 109.46695 * 179.11111 * 16 14 9 40 40 H 1.08996 * 109.47026 * 59.11020 * 16 14 9 41 41 H 0.96998 * 120.00644 * 359.97438 * 17 16 14 42 42 H 1.07999 * 119.53432 * 359.97438 * 21 20 18 43 43 H 1.07991 * 119.94452 * 179.97438 * 22 21 20 44 44 H 1.07995 * 119.11559 * 179.71901 * 25 24 23 45 45 H 1.07997 * 120.04789 * 180.24970 * 26 25 24 46 46 H 1.08005 * 120.92056 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.29836 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0640 -1.2173 -0.2356 9 7 1.3589 -2.3687 0.3003 10 6 0.2301 -2.3753 1.2408 11 6 0.5052 -3.4125 2.3341 12 6 0.7906 -4.7687 1.6849 13 6 2.0331 -4.6605 0.7981 14 6 1.7752 -3.6374 -0.3126 15 1 0.9873 -4.0036 -0.9709 16 6 3.0577 -3.4212 -1.1186 17 7 2.8070 -2.4458 -2.1826 18 6 3.8002 -2.0965 -3.0242 19 8 4.9037 -2.5912 -2.9006 20 6 3.5475 -1.1123 -4.0970 21 6 2.2695 -0.5422 -4.2359 22 6 2.0123 0.3633 -5.2133 23 6 3.0304 0.7466 -6.1065 24 7 2.7947 1.6419 -7.0705 25 6 3.7335 2.0031 -7.9116 26 6 5.0240 1.4833 -7.8379 27 6 5.3353 0.5679 -6.8732 28 6 4.3222 0.1777 -5.9751 29 6 4.5712 -0.7566 -4.9602 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6856 -2.6374 0.7107 32 1 0.1216 -1.3890 1.6918 33 1 -0.3659 -3.4962 2.9837 34 1 1.3691 -3.1015 2.9215 35 1 -0.0640 -5.0676 1.0778 36 1 0.9626 -5.5139 2.4616 37 1 2.2494 -5.6323 0.3545 38 1 2.8829 -4.3379 1.3996 39 1 3.3734 -4.3667 -1.5594 40 1 3.8418 -3.0473 -0.4603 41 1 1.9264 -2.0514 -2.2815 42 1 1.4815 -0.8297 -3.5557 43 1 1.0249 0.7909 -5.3057 44 1 3.5014 2.7262 -8.6794 45 1 5.7770 1.8035 -8.5427 46 1 6.3305 0.1546 -6.8008 47 1 5.5521 -1.1956 -4.8525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024631322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:38 Heat of formation + Delta-G solvation = 37.054852 kcal Electronic energy + Delta-G solvation = -29547.492762 eV Core-core repulsion = 25695.331810 eV Total energy + Delta-G solvation = -3852.160952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.85823 -39.34626 -37.82429 -36.52265 -34.30752 -33.51478 -33.09995 -31.32500 -30.22958 -30.01343 -29.89548 -26.29090 -25.18219 -24.02058 -23.77620 -22.20750 -22.05092 -20.85536 -20.42773 -19.18846 -18.13210 -17.70877 -16.91203 -16.44099 -15.71519 -15.58374 -15.31571 -14.57820 -14.44951 -14.23808 -14.08636 -13.93560 -13.73671 -13.54904 -13.41007 -13.31474 -13.12410 -12.86719 -12.47789 -12.10846 -11.98453 -11.89390 -11.49325 -11.37887 -11.20239 -10.98651 -10.78351 -10.64105 -10.58829 -10.32348 -10.18276 -10.02902 -9.66292 -9.57377 -9.50525 -9.32446 -8.83109 -8.62535 -8.35786 -8.17041 -6.69623 -5.89036 -3.35439 0.24917 0.68573 1.92104 2.57618 3.31033 3.39835 3.43434 3.57623 3.72832 4.18162 4.22373 4.40307 4.53965 4.63435 4.77961 4.94971 5.06623 5.18265 5.22687 5.27212 5.28429 5.42820 5.48201 5.60926 5.65597 5.73444 5.84996 5.92296 5.97105 6.01827 6.04918 6.11699 6.23437 6.33279 6.36475 6.38519 6.41145 6.46568 6.56672 6.67747 6.70360 6.78365 6.82440 6.93787 7.09953 7.33844 7.60034 7.75551 7.82712 8.16354 8.36321 8.74543 9.12015 9.73313 10.31961 11.17544 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.003511 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.289107 B = 7972.731361 C = 9038.548948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.013 3.987 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.685 5.685 18 C 0.549 3.451 19 O -0.560 6.560 20 C -0.118 4.118 21 C -0.063 4.063 22 C -0.100 4.100 23 C 0.141 3.859 24 N -0.476 5.476 25 C 0.132 3.868 26 C -0.186 4.186 27 C -0.047 4.047 28 C -0.114 4.114 29 C -0.037 4.037 30 H 0.255 0.745 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.415 0.585 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -2.144 -10.575 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.335 5.335 18 C 0.336 3.664 19 O -0.442 6.442 20 C -0.121 4.121 21 C -0.084 4.084 22 C -0.119 4.119 23 C 0.020 3.980 24 N -0.184 5.184 25 C -0.040 4.040 26 C -0.206 4.206 27 C -0.073 4.073 28 C -0.116 4.116 29 C -0.057 4.057 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.175 0.825 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.689 -2.054 -10.423 11.612 hybrid contribution 0.825 0.927 0.170 1.252 sum 5.514 -1.127 -10.252 11.696 Atomic orbital electron populations 1.70005 1.05089 1.25605 1.53302 1.25032 0.95118 0.97984 1.00543 0.86549 0.79506 0.84268 0.78160 1.20998 1.21490 1.20492 1.19158 0.92135 0.84102 1.42967 0.91381 1.44064 1.37256 1.02010 1.47876 1.20732 0.88693 0.97387 0.88308 1.22193 1.00041 0.96574 0.99547 1.21360 0.97642 0.97367 0.98122 1.21937 0.98311 0.98217 0.98232 1.20739 0.93286 0.88584 0.92102 0.95019 1.21337 0.98509 0.90629 0.88530 1.45948 1.14411 1.43247 1.29890 1.18094 0.84758 0.81770 0.81814 1.90708 1.23512 1.56134 1.73801 1.20113 0.94592 0.99677 0.97695 1.21197 0.96281 0.94391 0.96499 1.20696 0.99057 0.97947 0.94175 1.19015 0.92040 0.93135 0.93857 1.68063 1.34698 1.12043 1.03626 1.22980 0.88963 0.96436 0.95666 1.21842 0.98549 0.99631 1.00578 1.21537 0.98665 0.94607 0.92461 1.18792 0.94896 0.99788 0.98131 1.21393 0.99302 0.93604 0.91428 0.93527 0.96313 0.89953 0.93529 0.92821 0.92861 0.93703 0.93008 0.92057 0.92435 0.91339 0.74594 0.83893 0.84174 0.82505 0.84569 0.84228 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.62 11.31 55.49 0.63 -23.00 16 2 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 3 Si 0.89 21.02 29.58 -169.99 -5.03 15.99 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.19 6.99 -15.06 -0.11 -6.29 16 8 H 0.07 1.73 5.89 -52.49 -0.31 1.42 16 9 N -0.59 -13.05 2.97 -164.77 -0.49 -13.54 16 10 C 0.17 3.82 5.26 -3.71 -0.02 3.80 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 13 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 14 C 0.16 3.00 3.00 -67.60 -0.20 2.79 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.47 4.43 -4.04 -0.02 2.45 16 17 N -0.68 -12.92 3.83 -61.28 -0.23 -13.15 16 18 C 0.55 10.47 7.77 -12.36 -0.10 10.37 16 19 O -0.56 -11.84 16.31 5.31 0.09 -11.75 16 20 C -0.12 -2.01 5.87 -104.98 -0.62 -2.62 16 21 C -0.06 -1.04 9.44 -39.59 -0.37 -1.41 16 22 C -0.10 -1.57 9.95 -39.54 -0.39 -1.96 16 23 C 0.14 2.17 6.61 -84.77 -0.56 1.61 16 24 N -0.48 -6.86 10.33 -10.92 -0.11 -6.97 16 25 C 0.13 1.43 11.15 -17.46 -0.19 1.23 16 26 C -0.19 -1.74 10.03 -39.78 -0.40 -2.14 16 27 C -0.05 -0.51 9.89 -39.18 -0.39 -0.90 16 28 C -0.11 -1.62 5.74 -106.82 -0.61 -2.24 16 29 C -0.04 -0.57 9.35 -38.74 -0.36 -0.93 16 30 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 2.05 6.27 -51.93 -0.33 1.72 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.39 7.38 -51.93 -0.38 1.01 16 41 H 0.41 8.03 5.44 -40.82 -0.22 7.81 16 42 H 0.14 2.36 6.35 -52.49 -0.33 2.02 16 43 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 47 H 0.14 2.02 7.62 -52.49 -0.40 1.62 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -29.36 376.14 -10.97 -40.34 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.60 Total: 9.25 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -4.89 Total: -2.85 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.21 Total: -56.66 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.36 -10.97 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024631322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.394 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds