Wall clock time and date at job start Tue Mar 31 2020 22:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99657 * 2 1 4 4 H 1.48502 * 109.47354 * 269.99761 * 3 2 1 5 5 H 1.48499 * 109.47568 * 29.99903 * 3 2 1 6 6 H 1.48508 * 109.47185 * 149.99984 * 3 2 1 7 7 C 1.38806 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99472 * 165.37913 * 7 2 1 9 9 N 1.36931 * 120.00299 * 345.38179 * 7 2 1 10 10 C 1.46928 * 120.62930 * 328.40409 * 9 7 2 11 11 C 1.53192 * 108.77692 * 233.58666 * 10 9 7 12 12 C 1.53043 * 109.31359 * 305.36917 * 11 10 9 13 13 C 1.53039 * 109.54152 * 61.36083 * 12 11 10 14 14 C 1.46929 * 120.63218 * 148.38633 * 9 7 2 15 15 H 1.09006 * 109.70172 * 246.26896 * 14 9 7 16 16 C 1.53004 * 109.58621 * 6.62330 * 14 9 7 17 17 N 1.46499 * 109.46878 * 299.11093 * 16 14 9 18 18 C 1.34783 * 119.99805 * 179.97438 * 17 16 14 19 19 O 1.21559 * 119.99921 * 0.02562 * 18 17 16 20 20 C 1.47764 * 119.99699 * 180.02562 * 18 17 16 21 21 C 1.40634 * 119.81069 * 0.02562 * 20 18 17 22 22 C 1.35696 * 120.92570 * 180.02562 * 21 20 18 23 23 C 1.40759 * 120.10976 * 359.95777 * 22 21 20 24 24 N 1.33658 * 120.83298 * 180.31485 * 23 22 21 25 25 C 1.31121 * 121.39276 * 180.25604 * 24 23 22 26 26 C 1.39313 * 121.77039 * 359.44652 * 25 24 23 27 27 C 1.36581 * 119.90416 * 0.26853 * 26 25 24 28 28 C 1.40893 * 118.15917 * 0.02562 * 27 26 25 29 29 C 1.38553 * 119.80146 * 180.02562 * 20 18 17 30 30 H 0.96997 * 119.99984 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58430 * 113.80323 * 10 9 7 32 32 H 1.08996 * 109.70413 * 353.44759 * 10 9 7 33 33 H 1.08995 * 109.49918 * 185.41315 * 11 10 9 34 34 H 1.09000 * 109.49881 * 65.31569 * 11 10 9 35 35 H 1.09001 * 109.45666 * 301.34007 * 12 11 10 36 36 H 1.09001 * 109.44962 * 181.37909 * 12 11 10 37 37 H 1.08998 * 109.50034 * 178.68074 * 13 12 11 38 38 H 1.08999 * 109.51974 * 58.60568 * 13 12 11 39 39 H 1.08993 * 109.46695 * 179.11111 * 16 14 9 40 40 H 1.08996 * 109.47026 * 59.11020 * 16 14 9 41 41 H 0.96998 * 120.00644 * 359.97438 * 17 16 14 42 42 H 1.07999 * 119.53432 * 359.97438 * 21 20 18 43 43 H 1.07991 * 119.94452 * 179.97438 * 22 21 20 44 44 H 1.07995 * 119.11559 * 179.71901 * 25 24 23 45 45 H 1.07997 * 120.04789 * 180.24970 * 26 25 24 46 46 H 1.08005 * 120.92056 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.29836 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0640 -1.2173 -0.2356 9 7 1.3589 -2.3687 0.3003 10 6 0.2301 -2.3753 1.2408 11 6 0.5052 -3.4125 2.3341 12 6 0.7906 -4.7687 1.6849 13 6 2.0331 -4.6605 0.7981 14 6 1.7752 -3.6374 -0.3126 15 1 0.9873 -4.0036 -0.9709 16 6 3.0577 -3.4212 -1.1186 17 7 2.8070 -2.4458 -2.1826 18 6 3.8002 -2.0965 -3.0242 19 8 4.9037 -2.5912 -2.9006 20 6 3.5475 -1.1123 -4.0970 21 6 2.2695 -0.5422 -4.2359 22 6 2.0123 0.3633 -5.2133 23 6 3.0304 0.7466 -6.1065 24 7 2.7947 1.6419 -7.0705 25 6 3.7335 2.0031 -7.9116 26 6 5.0240 1.4833 -7.8379 27 6 5.3353 0.5679 -6.8732 28 6 4.3222 0.1777 -5.9751 29 6 4.5712 -0.7566 -4.9602 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6856 -2.6374 0.7107 32 1 0.1216 -1.3890 1.6918 33 1 -0.3659 -3.4962 2.9837 34 1 1.3691 -3.1015 2.9215 35 1 -0.0640 -5.0676 1.0778 36 1 0.9626 -5.5139 2.4616 37 1 2.2494 -5.6323 0.3545 38 1 2.8829 -4.3379 1.3996 39 1 3.3734 -4.3667 -1.5594 40 1 3.8418 -3.0473 -0.4603 41 1 1.9264 -2.0514 -2.2815 42 1 1.4815 -0.8297 -3.5557 43 1 1.0249 0.7909 -5.3057 44 1 3.5014 2.7262 -8.6794 45 1 5.7770 1.8035 -8.5427 46 1 6.3305 0.1546 -6.8008 47 1 5.5521 -1.1956 -4.8525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024631322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:37 Heat of formation + Delta-G solvation = 21.123425 kcal Electronic energy + Delta-G solvation = -29548.183601 eV Core-core repulsion = 25695.331810 eV Total energy + Delta-G solvation = -3852.851791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.93726 -40.76433 -39.35737 -37.70112 -35.80779 -34.90307 -34.51588 -32.70326 -31.77122 -31.36386 -31.09879 -27.81879 -26.78614 -25.25221 -24.86109 -23.81712 -23.16936 -22.32412 -21.84437 -20.73027 -19.44702 -18.89937 -18.14009 -17.91775 -17.35646 -16.80077 -16.68706 -16.17760 -15.77676 -15.56667 -15.51360 -15.19102 -15.08097 -14.89440 -14.81505 -14.54519 -14.44780 -14.07563 -13.99444 -13.61913 -13.47607 -13.08055 -12.88866 -12.86512 -12.64715 -12.59631 -12.46630 -12.33707 -12.07178 -11.79748 -11.62207 -11.52574 -11.22824 -11.09060 -10.88196 -10.53450 -10.52467 -10.02293 -9.76983 -9.35287 -8.55503 -7.85022 -5.30807 -0.80877 -0.36417 0.86564 1.36237 1.40896 1.43036 1.46833 2.23515 2.37412 2.47045 3.06554 3.25336 3.30847 3.52292 3.57295 3.68513 3.75081 3.95130 3.99408 4.00255 4.04903 4.22634 4.27453 4.29547 4.43790 4.50749 4.55370 4.65270 4.71161 4.75730 4.86344 4.87714 4.95779 5.00581 5.02001 5.14714 5.19760 5.23089 5.24888 5.28926 5.37288 5.45967 5.47189 5.58958 5.63251 5.74350 5.75223 5.84141 6.43571 6.63495 6.87668 7.18989 7.23109 7.88013 8.41612 9.19157 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.003511 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.289107 B = 7972.731361 C = 9038.548948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 0.925 3.075 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.058 0.942 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.159 3.841 15 H 0.034 0.966 16 C 0.138 3.862 17 N -0.688 5.688 18 C 0.550 3.450 19 O -0.586 6.586 20 C -0.147 4.147 21 C -0.073 4.073 22 C -0.111 4.111 23 C 0.125 3.875 24 N -0.512 5.512 25 C 0.138 3.862 26 C -0.169 4.169 27 C -0.050 4.050 28 C -0.130 4.130 29 C -0.026 4.026 30 H 0.248 0.752 31 H 0.002 0.998 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.411 0.589 42 H 0.131 0.869 43 H 0.143 0.857 44 H 0.195 0.805 45 H 0.183 0.817 46 H 0.171 0.829 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -2.636 -12.380 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.220 4.220 3 Si 0.755 3.245 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.366 4.366 8 H 0.076 0.924 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.053 3.947 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.337 5.337 18 C 0.338 3.662 19 O -0.469 6.469 20 C -0.150 4.150 21 C -0.093 4.093 22 C -0.129 4.129 23 C 0.004 3.996 24 N -0.221 5.221 25 C -0.034 4.034 26 C -0.188 4.188 27 C -0.075 4.075 28 C -0.132 4.132 29 C -0.046 4.046 30 H 0.058 0.942 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.250 0.750 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.212 0.788 45 H 0.201 0.799 46 H 0.188 0.812 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.457 -2.567 -12.220 14.058 hybrid contribution 0.366 1.159 0.530 1.325 sum 6.823 -1.409 -11.690 13.608 Atomic orbital electron populations 1.70089 1.05722 1.25300 1.55328 1.25355 0.95456 0.99466 1.01725 0.85936 0.78377 0.82679 0.77489 1.21511 1.21950 1.21036 1.19119 0.91619 0.84991 1.40869 0.92423 1.44238 1.37074 1.02671 1.48514 1.20562 0.88099 0.96923 0.89102 1.22051 1.00471 0.96652 0.98280 1.21345 0.97484 0.96428 0.98747 1.21890 0.98322 0.98642 0.97253 1.20906 0.93163 0.87622 0.93009 0.94867 1.21334 0.97761 0.91271 0.88247 1.45989 1.14268 1.43399 1.30052 1.18393 0.84220 0.81645 0.81958 1.90670 1.24252 1.57293 1.74698 1.19992 0.95594 1.00841 0.98526 1.21033 0.95966 0.95316 0.96981 1.20788 0.99698 0.97973 0.94452 1.19136 0.92403 0.93792 0.94279 1.68100 1.36509 1.12859 1.04609 1.23802 0.89050 0.95720 0.94803 1.22351 0.98759 0.97629 1.00081 1.21958 0.99122 0.94731 0.91719 1.19006 0.95569 0.99803 0.98795 1.21566 0.99021 0.93127 0.90891 0.94199 0.97958 0.93432 0.91745 0.93610 0.92393 0.90717 0.89873 0.92755 0.90438 0.93370 0.75050 0.85152 0.83965 0.78780 0.79949 0.81154 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.43 11.31 21.65 0.24 -50.19 16 2 C -0.02 -1.21 4.95 84.86 0.42 -0.79 16 3 Si 0.92 44.71 29.58 68.60 2.03 46.74 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.24 -11.83 6.99 84.03 0.59 -11.24 16 8 H 0.06 3.03 5.89 -2.91 -0.02 3.01 16 9 N -0.60 -27.15 2.97 -675.22 -2.00 -29.16 16 10 C 0.18 7.99 5.26 86.36 0.45 8.45 16 11 C -0.14 -4.76 6.08 30.67 0.19 -4.57 16 12 C -0.10 -3.00 5.88 30.62 0.18 -2.82 16 13 C -0.12 -3.71 5.37 30.67 0.16 -3.55 16 14 C 0.16 5.90 3.00 44.97 0.14 6.03 16 15 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 16 C 0.14 5.12 4.43 86.38 0.38 5.50 16 17 N -0.69 -26.90 3.83 -466.05 -1.79 -28.69 16 18 C 0.55 21.68 7.77 86.76 0.67 22.35 16 19 O -0.59 -25.20 16.31 -3.90 -0.06 -25.26 16 20 C -0.15 -5.19 5.87 -20.10 -0.12 -5.31 16 21 C -0.07 -2.53 9.44 22.27 0.21 -2.32 16 22 C -0.11 -3.63 9.95 22.30 0.22 -3.41 16 23 C 0.12 3.83 6.61 40.35 0.27 4.10 16 24 N -0.51 -14.04 10.33 -188.45 -1.95 -15.99 16 25 C 0.14 2.49 11.15 85.06 0.95 3.44 16 26 C -0.17 -2.37 10.03 22.14 0.22 -2.15 16 27 C -0.05 -0.91 9.89 22.53 0.22 -0.69 16 28 C -0.13 -3.55 5.74 -21.29 -0.12 -3.67 16 29 C -0.03 -0.80 9.35 22.82 0.21 -0.59 16 30 H 0.25 13.54 8.31 -92.71 -0.77 12.76 16 31 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.05 2.45 6.27 -2.39 -0.01 2.43 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.05 1.99 7.38 -2.39 -0.02 1.97 16 41 H 0.41 16.78 5.44 -92.71 -0.50 16.27 16 42 H 0.13 4.72 6.35 -2.91 -0.02 4.70 16 43 H 0.14 4.38 8.06 -2.92 -0.02 4.36 16 44 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 46 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 47 H 0.15 4.23 7.62 -2.91 -0.02 4.20 16 Total: -1.00 -66.77 376.14 2.21 -64.56 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.49 Total: 29.22 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.25 Total: 8.76 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -5.49 Total: -124.02 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.06 Total: -25.26 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.77 2.21 -64.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024631322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.684 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds